Wall clock time and date at job start Fri Apr 10 2020 18:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47187 * 2 1 4 4 C 1.34776 * 120.00277 * 84.30085 * 3 2 1 5 5 O 1.21270 * 120.00177 * 5.36074 * 4 3 2 6 6 C 1.50711 * 119.99616 * 185.36293 * 4 3 2 7 7 H 1.08994 * 110.31013 * 36.06501 * 6 4 3 8 8 C 1.54989 * 110.43355 * 158.31475 * 6 4 3 9 9 C 1.53255 * 104.19076 * 116.41329 * 8 6 4 10 10 H 1.08996 * 110.29381 * 269.71267 * 9 8 6 11 11 C 1.52251 * 113.90802 * 144.42315 * 9 8 6 12 12 C 1.53665 * 107.57478 * 182.75741 * 11 9 8 13 13 C 1.52816 * 110.61407 * 56.12500 * 12 11 9 14 14 C 1.53628 * 110.69797 * 306.25360 * 13 12 11 15 15 N 1.45658 * 107.80549 * 57.37521 * 14 13 12 16 16 C 1.47098 * 116.53853 * 177.32215 * 15 14 13 17 17 C 1.46505 * 119.99727 * 264.30530 * 3 2 1 18 18 C 1.53936 * 113.74482 * 38.73316 * 17 3 2 19 19 N 1.47809 * 86.04136 * 222.08623 * 18 17 3 20 20 C 1.36939 * 134.45647 * 204.64324 * 19 18 17 21 21 H 1.07998 * 119.99491 * 179.86727 * 20 19 18 22 22 C 1.38805 * 120.00216 * 359.87082 * 20 19 18 23 23 N 1.31620 * 120.00100 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00127 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47253 * 59.99487 * 24 22 20 26 26 H 1.48494 * 109.47517 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47216 * 299.99993 * 24 22 20 28 28 C 1.47582 * 91.04820 * 24.55278 * 19 18 17 29 29 H 1.09004 * 109.46764 * 176.50999 * 1 2 3 30 30 H 1.08993 * 109.47691 * 296.50634 * 1 2 3 31 31 H 1.09002 * 109.46988 * 56.51222 * 1 2 3 32 32 H 1.09007 * 109.47806 * 239.99561 * 2 1 3 33 33 H 1.09001 * 109.47194 * 119.99606 * 2 1 3 34 34 H 1.09005 * 110.48906 * 235.09422 * 8 6 4 35 35 H 1.09005 * 110.49029 * 357.73385 * 8 6 4 36 36 H 1.09005 * 109.83354 * 302.26707 * 11 9 8 37 37 H 1.09000 * 109.83824 * 63.16634 * 11 9 8 38 38 H 1.08999 * 109.24447 * 176.41827 * 12 11 9 39 39 H 1.09001 * 109.24330 * 295.87266 * 12 11 9 40 40 H 1.09000 * 109.23192 * 66.56174 * 13 12 11 41 41 H 1.08994 * 109.22948 * 185.97629 * 13 12 11 42 42 H 1.08997 * 109.79393 * 297.79451 * 14 13 12 43 43 H 1.09003 * 109.78994 * 176.95023 * 14 13 12 44 44 H 1.08999 * 110.60924 * 43.91822 * 16 15 14 45 45 H 1.09001 * 110.74592 * 280.99547 * 16 15 14 46 46 H 1.09001 * 112.94521 * 170.33526 * 17 3 2 47 47 H 1.09004 * 113.77016 * 336.35761 * 18 17 3 48 48 H 1.09009 * 113.76984 * 107.74951 * 18 17 3 49 49 H 0.97001 * 119.99840 * 180.02562 * 23 22 20 50 50 H 1.09007 * 113.76787 * 221.15408 * 28 19 18 51 51 H 1.08995 * 113.77226 * 89.75580 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1336 2.0552 1.1614 5 8 1.9268 1.4895 2.2139 6 6 2.5197 3.5120 1.1520 7 1 2.0762 4.0153 0.2929 8 6 2.0740 4.1984 2.4682 9 6 3.3871 4.6312 3.1294 10 1 3.7597 3.8419 3.7822 11 6 3.2940 5.9531 3.8790 12 6 4.6948 6.2793 4.4201 13 6 5.7172 6.3069 3.2846 14 6 5.6698 4.9994 2.4794 15 7 4.3112 4.8319 1.9815 16 6 4.0643 3.6607 1.1265 17 6 2.3811 2.0298 -1.2625 18 6 1.4416 1.6810 -2.4310 19 7 2.6675 1.5716 -3.2496 20 6 2.9421 1.6895 -4.5859 21 1 3.9535 1.5621 -4.9426 22 6 1.9206 1.9729 -5.4820 23 7 0.6879 2.1277 -5.0473 24 14 2.2953 2.1345 -7.3049 25 1 2.8700 0.8605 -7.8070 26 1 1.0427 2.4368 -8.0429 27 1 3.2712 3.2340 -7.5141 28 6 3.4765 1.2866 -2.0486 29 1 -0.3633 -1.0258 -0.0626 30 1 -0.3634 0.4586 0.9195 31 1 -0.3633 0.5670 -0.8571 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4506 5.0665 2.2537 35 1 1.5406 3.4926 3.1050 36 1 2.9670 6.7409 3.2003 37 1 2.5893 5.8609 4.7055 38 1 4.6735 7.2536 4.9082 39 1 4.9853 5.5199 5.1461 40 1 5.4961 7.1443 2.6227 41 1 6.7154 6.4341 3.7033 42 1 5.9333 4.1599 3.1227 43 1 6.3654 5.0562 1.6421 44 1 4.5420 2.7740 1.5431 45 1 4.4155 3.8432 0.1109 46 1 2.5677 3.0981 -1.1532 47 1 0.9131 0.7363 -2.3029 48 1 0.7859 2.4999 -2.7271 49 1 -0.0259 2.3254 -5.6736 50 1 4.4427 1.7914 -2.0398 51 1 3.5472 0.2260 -1.8079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950089572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:05 Heat of formation + Delta-G solvation = 7.572106 kcal Electronic energy + Delta-G solvation = -28849.471340 eV Core-core repulsion = 25170.549765 eV Total energy + Delta-G solvation = -3678.921575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86499 -40.51038 -39.25427 -36.11414 -35.79366 -33.97933 -33.19873 -32.22512 -30.23892 -29.31708 -28.21502 -26.62095 -25.30109 -25.17027 -23.73887 -22.78922 -22.19091 -21.42582 -20.74465 -19.45867 -18.89219 -18.44415 -17.29877 -16.85671 -16.66674 -16.45031 -16.05201 -15.78515 -15.65784 -15.23083 -14.94177 -14.72344 -14.59234 -14.36406 -14.03305 -13.81930 -13.55170 -13.51629 -13.43687 -13.23657 -13.17052 -12.86737 -12.70798 -12.58828 -12.47391 -12.34595 -12.16279 -12.12108 -11.97140 -11.89229 -11.65001 -11.52388 -11.48046 -11.30307 -11.17992 -10.88560 -10.72808 -9.60982 -9.44099 -8.92234 -7.89775 -5.23392 1.48736 1.50943 1.51701 1.57151 1.93070 2.50050 2.93405 3.28861 3.39723 3.49374 3.57359 3.65577 3.78964 3.95193 4.01974 4.05730 4.09494 4.20734 4.23869 4.31076 4.36895 4.40162 4.44862 4.51036 4.54482 4.57864 4.69032 4.77637 4.80236 4.82469 4.86051 4.87179 4.93968 4.96790 5.03623 5.07036 5.09724 5.14322 5.22734 5.27816 5.28724 5.33527 5.40280 5.49847 5.51617 5.63099 5.90364 5.91781 6.20813 6.43072 6.92083 7.12817 7.60967 8.53611 9.26582 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.003411 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.780279 B = 8206.657958 C = 9419.834345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 N -0.591 5.591 4 C 0.523 3.477 5 O -0.574 6.574 6 C -0.113 4.113 7 H 0.107 0.893 8 C -0.100 4.100 9 C 0.066 3.934 10 H 0.039 0.961 11 C -0.102 4.102 12 C -0.119 4.119 13 C -0.110 4.110 14 C 0.050 3.950 15 N -0.525 5.525 16 C 0.066 3.934 17 C 0.111 3.889 18 C 0.156 3.844 19 N -0.633 5.633 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.061 4.061 23 N -0.950 5.950 24 Si 0.976 3.024 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.112 3.888 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.028 0.972 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.093 0.907 46 H 0.125 0.875 47 H 0.032 0.968 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.064 0.936 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 6.186 17.964 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.011 4.011 3 N -0.322 5.322 4 C 0.313 3.687 5 O -0.454 6.454 6 C -0.135 4.135 7 H 0.125 0.875 8 C -0.138 4.138 9 C -0.042 4.042 10 H 0.057 0.943 11 C -0.140 4.140 12 C -0.157 4.157 13 C -0.148 4.148 14 C -0.078 4.078 15 N -0.250 5.250 16 C -0.063 4.063 17 C 0.006 3.994 18 C 0.030 3.970 19 N -0.361 5.361 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.255 4.255 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.206 1.206 26 H -0.222 1.222 27 H -0.201 1.201 28 C -0.014 4.014 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.098 0.902 44 H 0.052 0.948 45 H 0.111 0.889 46 H 0.142 0.858 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.406 6.388 17.877 20.036 hybrid contribution 0.028 -1.173 -1.038 1.567 sum 6.434 5.215 16.839 18.765 Atomic orbital electron populations 1.22104 0.95328 1.02926 1.01439 1.21398 0.94931 0.82202 1.02567 1.48133 1.63588 1.14164 1.06335 1.20804 0.75710 0.89491 0.82732 1.90609 1.52579 1.70645 1.31573 1.22353 0.97725 0.91413 1.01962 0.87460 1.22138 0.97444 1.00243 0.93960 1.22424 0.92473 0.97382 0.91893 0.94340 1.21501 0.97731 0.95359 0.99361 1.21588 0.94287 1.02242 0.97546 1.21565 0.99707 0.96555 0.96945 1.22136 0.89285 0.97890 0.98534 1.63984 1.07189 1.38242 1.15539 1.22622 0.92452 0.91953 0.99273 1.23678 0.96770 0.98065 0.80858 1.22631 0.90438 0.98283 0.85670 1.46036 1.05891 1.82293 1.01844 1.19314 0.94316 1.40872 0.81763 0.89680 1.25565 0.95274 1.02530 1.02083 1.69977 0.99953 1.55487 1.34377 0.85188 0.76449 0.78124 0.79764 1.20614 1.22208 1.20070 1.23089 0.95609 0.97790 0.84915 0.90138 0.93130 0.93117 0.90409 0.90355 0.89238 0.90868 0.90805 0.90582 0.90361 0.92525 0.91360 0.90215 0.95325 0.90229 0.94834 0.88869 0.85786 0.94989 0.93664 0.94223 0.91814 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.92 71.98 0.71 -3.92 16 2 C 0.11 3.36 5.16 86.38 0.45 3.81 16 3 N -0.59 -18.58 2.70 -803.52 -2.17 -20.76 16 4 C 0.52 16.26 6.70 87.66 0.59 16.85 16 5 O -0.57 -20.55 15.20 -3.00 -0.05 -20.60 16 6 C -0.11 -2.95 2.50 -10.10 -0.03 -2.97 16 7 H 0.11 2.78 6.57 -2.39 -0.02 2.76 16 8 C -0.10 -2.35 6.16 31.36 0.19 -2.16 16 9 C 0.07 1.43 2.50 44.40 0.11 1.54 16 10 H 0.04 0.94 7.98 -2.39 -0.02 0.92 16 11 C -0.10 -1.71 5.64 30.57 0.17 -1.53 16 12 C -0.12 -1.70 5.95 30.76 0.18 -1.52 16 13 C -0.11 -1.64 6.06 30.74 0.19 -1.46 16 14 C 0.05 0.93 5.87 86.75 0.51 1.44 16 15 N -0.52 -11.61 4.84 -864.16 -4.18 -15.80 16 16 C 0.07 1.60 6.06 87.02 0.53 2.13 16 17 C 0.11 3.82 4.21 46.75 0.20 4.02 16 18 C 0.16 6.92 6.50 86.44 0.56 7.48 16 19 N -0.63 -30.62 3.70 -716.70 -2.65 -33.28 16 20 C -0.23 -12.59 10.70 84.03 0.90 -11.70 16 21 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 22 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 23 N -0.95 -55.27 11.39 21.65 0.25 -55.02 16 24 Si 0.98 44.37 29.55 68.60 2.03 46.40 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.11 4.18 8.43 86.49 0.73 4.91 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.64 6.46 -2.39 -0.02 1.63 16 32 H 0.08 2.42 6.14 -2.38 -0.01 2.40 16 33 H 0.08 2.32 7.53 -2.39 -0.02 2.30 16 34 H 0.09 1.87 8.00 -2.38 -0.02 1.85 16 35 H 0.07 1.95 6.78 -2.38 -0.02 1.93 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.03 0.56 7.99 -2.39 -0.02 0.54 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 44 H 0.03 0.88 7.88 -2.39 -0.02 0.86 16 45 H 0.09 2.23 8.02 -2.39 -0.02 2.21 16 46 H 0.12 4.02 5.58 -2.39 -0.01 4.00 16 47 H 0.03 1.46 5.35 -2.38 -0.01 1.45 16 48 H 0.04 2.29 7.17 -2.38 -0.02 2.27 16 49 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 50 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 51 H 0.04 1.62 6.93 -2.39 -0.02 1.60 16 Total: -1.00 -63.89 382.48 0.57 -63.32 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.90 Total: 21.71 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.46 Total: 14.03 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -8.76 Total: -124.85 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -63.89 0.57 -63.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950089572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.889 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds