Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 N 1.46496 * 109.46919 * 119.99780 * 2 1 3 5 5 C 1.34774 * 120.00477 * 275.00172 * 4 2 1 6 6 O 1.21288 * 119.99710 * 0.02562 * 5 4 2 7 7 C 1.51492 * 120.00307 * 180.02562 * 5 4 2 8 8 C 1.52469 * 108.85332 * 299.17200 * 7 5 4 9 9 C 1.52131 * 112.63280 * 188.79736 * 8 7 5 10 10 C 1.52182 * 112.85157 * 44.68983 * 9 8 7 11 11 N 1.45809 * 112.61710 * 314.07445 * 10 9 8 12 12 C 1.45873 * 113.93613 * 288.68804 * 11 10 9 13 13 C 1.52307 * 112.13963 * 70.07916 * 12 11 10 14 14 C 1.52169 * 112.43349 * 47.57550 * 13 12 11 15 15 C 1.46474 * 112.10991 * 57.12764 * 11 10 9 16 16 C 1.52994 * 109.47039 * 240.00247 * 2 1 3 17 17 C 1.53496 * 114.21139 * 59.99969 * 16 2 1 18 18 N 1.47071 * 87.98576 * 87.51590 * 17 16 2 19 19 C 1.36933 * 136.05915 * 207.08843 * 18 17 16 20 20 H 1.08009 * 120.00045 * 7.55643 * 19 18 17 21 21 C 1.38810 * 120.00177 * 187.56655 * 19 18 17 22 22 N 1.31615 * 120.00335 * 174.38213 * 21 19 18 23 23 Si 1.86803 * 119.99704 * 354.37167 * 21 19 18 24 24 H 1.48507 * 109.46790 * 174.95223 * 23 21 19 25 25 H 1.48500 * 109.47387 * 294.95091 * 23 21 19 26 26 H 1.48494 * 109.47012 * 54.95398 * 23 21 19 27 27 C 1.47066 * 87.88056 * 27.34410 * 18 17 16 28 28 H 1.09004 * 109.46915 * 59.99801 * 1 2 3 29 29 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47332 * 300.00073 * 1 2 3 31 31 H 0.97005 * 119.99841 * 95.00782 * 4 2 1 32 32 H 1.09706 * 109.05664 * 310.30158 * 8 7 5 33 33 H 1.09709 * 109.03212 * 67.38365 * 8 7 5 34 34 H 1.08739 * 110.89293 * 279.62583 * 9 8 7 35 35 H 1.10630 * 107.92973 * 163.73482 * 9 8 7 36 36 H 1.09715 * 109.04154 * 192.74762 * 10 9 8 37 37 H 1.09667 * 109.17346 * 75.59247 * 10 9 8 38 38 H 1.09635 * 109.22765 * 191.11914 * 12 11 10 39 39 H 1.09576 * 109.36325 * 308.76437 * 12 11 10 40 40 H 1.10501 * 107.98841 * 166.78546 * 13 12 11 41 41 H 1.08692 * 110.72399 * 282.92017 * 13 12 11 42 42 H 1.09684 * 109.24785 * 192.95515 * 14 13 12 43 43 H 1.09701 * 109.18940 * 75.58417 * 14 13 12 44 44 H 1.08875 * 109.94866 * 175.81758 * 15 11 10 45 45 H 1.08891 * 109.90878 * 54.78962 * 15 11 10 46 46 H 1.09002 * 113.41582 * 286.79644 * 16 2 1 47 47 H 1.09003 * 113.46656 * 332.74144 * 17 16 2 48 48 H 1.08989 * 113.52654 * 202.30556 * 17 16 2 49 49 H 0.97003 * 120.00304 * 354.80747 * 22 21 19 50 50 H 1.09007 * 113.46804 * 87.44231 * 27 18 17 51 51 H 1.09005 * 113.46460 * 217.86739 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6525 -0.7323 3.5940 8 6 1.6917 -1.8657 3.9358 9 6 1.9969 -2.5061 5.2816 10 6 2.2776 -1.4831 6.3727 11 7 3.1907 -0.4336 5.9359 12 6 4.5690 -0.8805 5.7678 13 6 4.7301 -1.8063 4.5692 14 6 4.0561 -1.2603 3.3190 15 6 2.6951 0.2704 4.7509 16 6 2.0400 -0.7212 -1.2492 17 6 1.5899 -0.0846 -2.5714 18 7 2.7723 0.7866 -2.4945 19 6 3.1104 2.0325 -2.9510 20 1 2.3636 2.6577 -3.4179 21 6 4.4130 2.4921 -2.8139 22 7 4.7653 3.6415 -3.3497 23 14 5.6661 1.4792 -1.8686 24 1 7.0007 2.1225 -1.9705 25 1 5.2629 1.3991 -0.4416 26 1 5.7309 0.1111 -2.4423 27 6 3.4340 -0.2720 -1.7171 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.2491 -1.6317 1.1526 32 1 0.6663 -1.4758 3.9443 33 1 1.7469 -2.6304 3.1511 34 1 2.8161 -3.2160 5.1964 35 1 1.1109 -3.0935 5.5880 36 1 2.7078 -1.9958 7.2420 37 1 1.3319 -1.0292 6.6928 38 1 5.2183 -0.0070 5.6357 39 1 4.8944 -1.4036 6.6740 40 1 5.8103 -1.9095 4.3604 41 1 4.3657 -2.8036 4.8018 42 1 3.9996 -2.0531 2.5631 43 1 4.6685 -0.4503 2.9037 44 1 3.3643 1.0916 4.4997 45 1 1.6936 0.6542 4.9394 46 1 1.9119 -1.8028 -1.2076 47 1 0.6466 0.4562 -2.4939 48 1 1.6124 -0.7733 -3.4158 49 1 4.1372 4.1313 -3.9034 50 1 3.9433 -1.0110 -2.3358 51 1 4.0621 0.1090 -0.9118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969950106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = -7.126483 kcal Electronic energy + Delta-G solvation = -29434.834466 eV Core-core repulsion = 25755.275512 eV Total energy + Delta-G solvation = -3679.558954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.22440 -40.82537 -39.56231 -36.24511 -34.78824 -34.35468 -34.01534 -31.89093 -31.46265 -29.64516 -27.36525 -27.10120 -25.73972 -24.90595 -24.19591 -23.00185 -22.41177 -21.43808 -20.65281 -19.55841 -19.37873 -18.19189 -17.68931 -17.05994 -16.70510 -16.21472 -16.03311 -15.93785 -15.87611 -15.53173 -15.24896 -15.00307 -14.79855 -14.51174 -14.19090 -14.01476 -13.70594 -13.61452 -13.47883 -13.34949 -13.15043 -12.86330 -12.72942 -12.51177 -12.44388 -12.35605 -12.26235 -12.07467 -11.93576 -11.88783 -11.70826 -11.65899 -11.32116 -11.08714 -10.91636 -10.73743 -10.60737 -10.10921 -9.21920 -9.01875 -8.63803 -5.48073 1.28377 1.40780 1.59163 1.62143 2.10378 2.48947 3.00951 3.03456 3.18475 3.37597 3.53368 3.60655 3.61939 3.76187 3.96903 4.07059 4.10335 4.21907 4.23823 4.31192 4.36999 4.39566 4.49927 4.51763 4.53576 4.58983 4.64775 4.68012 4.72419 4.74346 4.83616 4.85254 4.94636 4.99277 5.01558 5.05312 5.09325 5.10231 5.10946 5.16518 5.18356 5.25372 5.28276 5.37387 5.48297 5.59201 5.93735 6.14885 6.40818 6.56733 6.68702 7.28283 7.31625 8.26951 8.88198 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.004002 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.286590 B = 6994.308134 C = 7788.317055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.168 3.832 3 H 0.038 0.962 4 N -0.705 5.705 5 C 0.515 3.485 6 O -0.588 6.588 7 C -0.092 4.092 8 C -0.095 4.095 9 C -0.145 4.145 10 C 0.061 3.939 11 N -0.554 5.554 12 C 0.061 3.939 13 C -0.144 4.144 14 C -0.104 4.104 15 C 0.095 3.905 16 C -0.106 4.106 17 C 0.126 3.874 18 N -0.663 5.663 19 C -0.284 4.284 20 H 0.048 0.952 21 C -0.089 4.089 22 N -0.975 5.975 23 Si 1.111 2.889 24 H -0.306 1.306 25 H -0.291 1.291 26 H -0.249 1.249 27 C 0.089 3.911 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.415 0.585 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.137 0.863 47 H 0.049 0.951 48 H 0.067 0.933 49 H 0.246 0.754 50 H 0.066 0.934 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 -23.516 20.455 31.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.063 3.937 3 H 0.056 0.944 4 N -0.357 5.357 5 C 0.301 3.699 6 O -0.468 6.468 7 C -0.097 4.097 8 C -0.133 4.133 9 C -0.184 4.184 10 C -0.066 4.066 11 N -0.275 5.275 12 C -0.067 4.067 13 C -0.183 4.183 14 C -0.142 4.142 15 C -0.034 4.034 16 C -0.125 4.125 17 C 0.000 4.000 18 N -0.393 5.393 19 C -0.412 4.412 20 H 0.066 0.934 21 C -0.280 4.280 22 N -0.621 5.621 23 Si 0.938 3.062 24 H -0.234 1.234 25 H -0.219 1.219 26 H -0.174 1.174 27 C -0.035 4.035 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.154 0.846 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.084 0.916 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.417 -22.166 21.319 31.070 hybrid contribution -1.469 0.602 -2.092 2.626 sum -5.886 -21.564 19.228 29.484 Atomic orbital electron populations 1.21997 0.93566 1.03423 1.01398 1.20373 0.94782 0.95378 0.83185 0.94372 1.45917 1.66666 1.14464 1.08629 1.21435 0.76294 0.86646 0.85482 1.90709 1.51970 1.18408 1.85725 1.21245 0.97745 0.98291 0.92424 1.21288 0.96975 0.95732 0.99334 1.21927 1.03944 0.98649 0.93866 1.21874 0.96371 0.90999 0.97381 1.60201 1.03121 1.30472 1.33691 1.21881 0.88246 0.98338 0.98215 1.21947 1.01607 1.00453 0.94297 1.21350 0.92501 1.00804 0.99536 1.21561 1.00400 0.94391 0.87096 1.23008 0.95234 1.01061 0.93246 1.22658 0.90849 0.91316 0.95150 1.46124 1.16352 1.12389 1.64390 1.20009 0.95348 0.90828 1.35025 0.93410 1.26969 0.98623 0.99726 1.02725 1.71000 1.37806 1.16820 1.36518 0.83226 0.73149 0.75067 0.74714 1.23405 1.21902 1.17383 1.23092 0.96362 0.90271 0.93796 0.92002 0.89120 0.94092 0.74793 0.92580 0.89466 0.89814 0.90090 0.89054 0.91486 0.92390 0.88679 0.90832 0.89072 0.89495 0.94378 0.92915 0.91532 0.84573 0.93261 0.91583 0.94547 0.91620 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.29 71.98 0.67 -3.22 16 2 C 0.17 5.30 2.43 44.99 0.11 5.41 16 3 H 0.04 1.72 7.36 -2.39 -0.02 1.71 16 4 N -0.71 -17.78 4.88 -441.63 -2.16 -19.94 16 5 C 0.51 15.38 6.32 87.91 0.56 15.94 16 6 O -0.59 -24.36 15.58 -3.06 -0.05 -24.40 16 7 C -0.09 -1.94 0.57 -52.98 -0.03 -1.97 16 8 C -0.10 -1.35 4.51 30.13 0.14 -1.21 16 9 C -0.15 -1.46 5.10 30.04 0.15 -1.31 16 10 C 0.06 0.80 5.76 86.24 0.50 1.30 16 11 N -0.55 -10.32 4.79 -902.31 -4.32 -14.64 16 12 C 0.06 0.94 5.77 86.27 0.50 1.44 16 13 C -0.14 -1.91 5.15 30.09 0.16 -1.76 16 14 C -0.10 -1.91 4.50 30.14 0.14 -1.78 16 15 C 0.09 2.34 4.18 86.44 0.36 2.70 16 16 C -0.11 -3.05 3.73 -10.38 -0.04 -3.09 16 17 C 0.13 4.46 8.08 83.17 0.67 5.13 16 18 N -0.66 -32.31 3.49 -737.98 -2.58 -34.88 16 19 C -0.28 -17.29 11.08 84.03 0.93 -16.36 16 20 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 21 C -0.09 -5.62 5.50 84.86 0.47 -5.16 16 22 N -0.98 -66.36 13.70 21.65 0.30 -66.07 16 23 Si 1.11 57.02 25.16 68.60 1.73 58.75 16 24 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 25 H -0.29 -14.60 6.51 99.48 0.65 -13.95 16 26 H -0.25 -11.03 6.20 99.48 0.62 -10.41 16 27 C 0.09 3.48 5.24 83.26 0.44 3.91 16 28 H 0.06 1.74 6.50 -2.39 -0.02 1.73 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.41 6.90 7.71 -92.70 -0.71 6.19 16 32 H 0.06 0.92 8.14 -2.01 -0.02 0.91 16 33 H 0.09 0.87 7.81 -2.01 -0.02 0.86 16 34 H 0.08 0.64 5.73 -2.52 -0.01 0.63 16 35 H 0.08 0.60 8.28 -1.51 -0.01 0.58 16 36 H 0.09 0.87 8.11 -2.01 -0.02 0.85 16 37 H 0.07 0.94 8.20 -2.03 -0.02 0.93 16 38 H 0.06 1.07 8.19 -2.05 -0.02 1.05 16 39 H 0.09 1.07 8.10 -2.08 -0.02 1.05 16 40 H 0.07 0.90 8.27 -1.58 -0.01 0.88 16 41 H 0.09 0.84 5.66 -2.55 -0.01 0.83 16 42 H 0.09 1.23 7.80 -2.02 -0.02 1.21 16 43 H 0.04 0.93 8.14 -2.01 -0.02 0.92 16 44 H 0.05 1.61 8.07 -2.45 -0.02 1.59 16 45 H 0.07 1.82 8.08 -2.44 -0.02 1.80 16 46 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.05 1.75 6.43 -2.39 -0.02 1.73 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.25 16.73 8.73 -92.71 -0.81 15.92 16 50 H 0.07 2.33 7.66 -2.38 -0.02 2.32 16 51 H 0.04 1.50 4.71 -2.38 -0.01 1.49 16 Total: -1.00 -83.91 372.93 -1.33 -85.24 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.04 Total: 15.99 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.71 Total: -0.04 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -8.76 Total: -135.53 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 57.02 SS G_CDS: 1.73 Total: 58.75 kcal Total: -83.91 -1.33 -85.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969950106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.115 kcal (2) G-P(sol) polarization free energy of solvation -83.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds