Wall clock time and date at job start Fri Apr 10 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46923 * 2 1 4 4 N 1.46501 * 109.46841 * 240.00584 * 2 1 3 5 5 C 1.34777 * 120.00610 * 84.99901 * 4 2 1 6 6 O 1.21284 * 119.99392 * 359.97438 * 5 4 2 7 7 C 1.51491 * 120.00075 * 180.02562 * 5 4 2 8 8 C 1.52482 * 108.84707 * 60.76332 * 7 5 4 9 9 C 1.52179 * 112.51306 * 171.43885 * 8 7 5 10 10 C 1.52275 * 112.53313 * 314.39693 * 9 8 7 11 11 N 1.45853 * 112.30082 * 47.11199 * 10 9 8 12 12 C 1.45840 * 113.92350 * 70.57027 * 11 10 9 13 13 C 1.52218 * 112.43996 * 289.13490 * 12 11 10 14 14 C 1.52130 * 112.77621 * 313.62540 * 13 12 11 15 15 C 1.46482 * 112.04316 * 302.08036 * 11 10 9 16 16 C 1.52994 * 109.47309 * 120.00478 * 2 1 3 17 17 C 1.53950 * 113.74183 * 281.99167 * 16 2 1 18 18 N 1.47807 * 86.03791 * 222.08759 * 17 16 2 19 19 C 1.36942 * 134.45812 * 204.64477 * 18 17 16 20 20 H 1.07993 * 120.00216 * 179.86799 * 19 18 17 21 21 C 1.38817 * 119.99763 * 359.86880 * 19 18 17 22 22 N 1.31628 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46973 * 59.99591 * 23 21 19 25 25 H 1.48503 * 109.47241 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47096 * 299.99910 * 23 21 19 27 27 C 1.47578 * 91.05256 * 24.54806 * 18 17 16 28 28 H 1.09003 * 109.47732 * 55.79992 * 1 2 3 29 29 H 1.09003 * 109.47384 * 175.80256 * 1 2 3 30 30 H 1.09001 * 109.47167 * 295.79685 * 1 2 3 31 31 H 0.97011 * 119.99808 * 264.99702 * 4 2 1 32 32 H 1.09672 * 109.09791 * 292.86893 * 8 7 5 33 33 H 1.09690 * 109.05711 * 50.09793 * 8 7 5 34 34 H 1.10527 * 108.07114 * 195.28441 * 9 8 7 35 35 H 1.08703 * 110.87355 * 79.10043 * 9 8 7 36 36 H 1.09650 * 109.09952 * 285.83694 * 10 9 8 37 37 H 1.09621 * 109.14397 * 168.46358 * 10 9 8 38 38 H 1.09649 * 109.23665 * 167.78503 * 12 11 10 39 39 H 1.09675 * 109.20569 * 50.39704 * 12 11 10 40 40 H 1.10596 * 107.85443 * 194.48520 * 13 12 11 41 41 H 1.08726 * 110.80244 * 78.62907 * 13 12 11 42 42 H 1.09716 * 109.26169 * 283.37810 * 14 13 12 43 43 H 1.09735 * 109.20201 * 166.09572 * 14 13 12 44 44 H 1.08886 * 109.93912 * 305.17801 * 15 11 10 45 45 H 1.08886 * 109.92747 * 184.15533 * 15 11 10 46 46 H 1.08995 * 112.94878 * 53.58416 * 16 2 1 47 47 H 1.08997 * 113.76576 * 336.35268 * 17 16 2 48 48 H 1.09002 * 113.76932 * 107.74515 * 17 16 2 49 49 H 0.96994 * 119.99712 * 180.02562 * 22 21 19 50 50 H 1.08999 * 113.77463 * 221.15109 * 27 18 17 51 51 H 1.09004 * 113.76791 * 89.75964 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8580 1.1585 -2.4117 7 6 2.6513 -0.7324 -3.5943 8 6 1.6901 -1.8662 -3.9348 9 6 2.0000 -2.5089 -5.2789 10 6 2.2615 -1.4805 -6.3711 11 7 3.1823 -0.4355 -5.9383 12 6 4.5588 -0.8896 -5.7772 13 6 4.7323 -1.8016 -4.5709 14 6 4.0552 -1.2601 -3.3209 15 6 2.6941 0.2703 -4.7512 16 6 2.0400 -0.7213 1.2491 17 6 1.9705 0.1314 2.5290 18 7 3.3068 -0.4164 2.8436 19 6 4.0154 -0.6124 3.9989 20 1 5.0037 -1.0459 3.9593 21 6 3.4632 -0.2539 5.2210 22 7 2.2588 0.2749 5.2693 23 14 4.4299 -0.5206 6.7970 24 1 5.6979 0.2500 6.7363 25 1 3.6249 -0.0577 7.9559 26 1 4.7357 -1.9655 6.9516 27 6 3.5697 -0.6694 1.4136 28 1 -0.3635 0.5776 -0.8499 29 1 -0.3634 -1.0249 -0.0752 30 1 -0.3633 0.4472 0.9253 31 1 2.2489 -1.6318 -1.1528 32 1 1.7420 -2.6289 -3.1484 33 1 0.6655 -1.4748 -3.9494 34 1 1.1240 -3.1115 -5.5809 35 1 2.8333 -3.2017 -5.1940 36 1 1.3102 -1.0236 -6.6688 37 1 2.6763 -1.9873 -7.2502 38 1 5.2160 -0.0188 -5.6675 39 1 4.8695 -1.4271 -6.6813 40 1 5.8153 -1.8865 -4.3630 41 1 4.3865 -2.8078 -4.7946 42 1 4.6660 -0.4518 -2.8997 43 1 3.9978 -2.0562 -2.5678 44 1 1.6940 0.6595 -4.9357 45 1 3.3685 1.0880 -4.5020 46 1 1.6199 -1.7205 1.3642 47 1 1.9688 1.2052 2.3419 48 1 1.1913 -0.1818 3.2239 49 1 1.8731 0.5257 6.1231 50 1 4.0650 -1.6208 1.2195 51 1 4.0389 0.1687 0.8982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969950107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:43 Heat of formation + Delta-G solvation = 7.906880 kcal Electronic energy + Delta-G solvation = -28794.030938 eV Core-core repulsion = 25115.123880 eV Total energy + Delta-G solvation = -3678.907058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31245 -39.19907 -37.88986 -34.81763 -33.78735 -33.40093 -32.08741 -31.06507 -30.18744 -27.47707 -26.69842 -25.05590 -24.44126 -23.83720 -23.28094 -21.78049 -21.25271 -20.26576 -19.19772 -18.63359 -17.17949 -16.74691 -16.18026 -15.91675 -15.34259 -15.03594 -14.88952 -14.66854 -14.51300 -14.05455 -13.90391 -13.60784 -13.55568 -13.27651 -13.13567 -12.82298 -12.69547 -12.27219 -12.02442 -11.85040 -11.70283 -11.61280 -11.58279 -11.39973 -11.33128 -11.22257 -11.14311 -10.88999 -10.86228 -10.67393 -10.35442 -10.11951 -10.00613 -9.81762 -9.50055 -9.37009 -8.82356 -8.77645 -8.31709 -6.87627 -5.76811 -3.08963 2.74921 3.25756 3.39119 3.43149 3.44562 3.75027 4.31695 4.38333 4.39141 4.45116 4.63472 4.69168 4.83758 4.86905 4.92518 5.09560 5.12722 5.17912 5.20024 5.25971 5.40305 5.41002 5.47545 5.54572 5.55249 5.61294 5.66126 5.67467 5.75068 5.77972 5.80526 5.82520 5.88019 6.00877 6.03539 6.07186 6.09126 6.28912 6.35490 6.44875 6.60436 6.63765 6.82567 6.89173 7.03544 7.22206 7.36180 7.55388 7.67247 7.98166 8.36522 9.04588 9.70836 10.60255 11.40389 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.002786 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.905795 B =10049.034169 C =10609.835073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.716 5.716 5 C 0.522 3.478 6 O -0.541 6.541 7 C -0.104 4.104 8 C -0.100 4.100 9 C -0.152 4.152 10 C 0.066 3.934 11 N -0.546 5.546 12 C 0.066 3.934 13 C -0.151 4.151 14 C -0.102 4.102 15 C 0.092 3.908 16 C -0.147 4.147 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.285 1.285 27 C 0.126 3.874 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.028 0.972 48 H 0.074 0.926 49 H 0.254 0.746 50 H 0.039 0.961 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -6.641 -23.942 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.418 6.418 7 C -0.110 4.110 8 C -0.138 4.138 9 C -0.191 4.191 10 C -0.062 4.062 11 N -0.266 5.266 12 C -0.062 4.062 13 C -0.190 4.190 14 C -0.140 4.140 15 C -0.036 4.036 16 C -0.167 4.167 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.000 4.000 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.983 -5.455 -23.974 24.606 hybrid contribution 0.664 -1.190 1.758 2.225 sum -0.319 -6.645 -22.216 23.190 Atomic orbital electron populations 1.22101 0.95538 1.01561 1.02350 1.21106 0.93734 0.97454 0.83198 0.89551 1.46174 1.66701 1.13922 1.09771 1.20630 0.77309 0.87113 0.84261 1.90692 1.50267 1.15901 1.84943 1.21295 0.96485 0.97951 0.95220 1.21274 0.98509 0.96522 0.97490 1.22001 1.02559 0.98963 0.95534 1.21779 0.96752 0.91278 0.96413 1.60248 1.02133 1.29227 1.35026 1.21775 0.89267 0.98450 0.96754 1.21975 1.01158 0.99993 0.95855 1.21278 0.93660 1.01273 0.97777 1.21788 1.02075 0.94366 0.85415 1.23839 0.97534 1.00681 0.94620 1.22224 0.89589 0.93904 0.89274 1.45976 1.16207 1.72040 0.99599 1.18976 0.98366 1.35033 0.82832 0.90395 1.24782 0.97052 1.01120 0.97485 1.69800 1.15227 1.47300 1.24530 0.86204 0.78892 0.77815 0.82871 1.21208 1.21518 1.21109 1.22517 0.93106 0.97528 0.86830 0.92857 0.92903 0.91101 0.77000 0.91583 0.91604 0.91890 0.91271 0.90926 0.90991 0.90834 0.91011 0.91782 0.91377 0.91363 0.91458 0.89884 0.89798 0.89464 0.95436 0.90738 0.93569 0.94291 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.46 37.15 0.35 -1.87 16 2 C 0.15 2.31 2.29 -67.94 -0.16 2.15 16 3 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 4 N -0.72 -9.15 4.76 -53.52 -0.25 -9.41 16 5 C 0.52 7.00 6.32 -10.60 -0.07 6.94 16 6 O -0.54 -9.32 15.58 5.55 0.09 -9.23 16 7 C -0.10 -1.06 0.57 -155.73 -0.09 -1.14 16 8 C -0.10 -0.85 4.51 -27.41 -0.12 -0.97 16 9 C -0.15 -1.06 5.14 -27.52 -0.14 -1.20 16 10 C 0.07 0.49 5.77 -4.76 -0.03 0.46 16 11 N -0.55 -4.90 4.79 -236.52 -1.13 -6.03 16 12 C 0.07 0.51 5.77 -4.80 -0.03 0.48 16 13 C -0.15 -1.14 5.11 -27.57 -0.14 -1.28 16 14 C -0.10 -0.94 4.51 -27.45 -0.12 -1.06 16 15 C 0.09 0.98 4.18 -3.97 -0.02 0.97 16 16 C -0.15 -2.62 3.35 -89.69 -0.30 -2.92 16 17 C 0.18 4.09 6.90 -2.84 -0.02 4.07 16 18 N -0.61 -15.77 3.70 -177.70 -0.66 -16.43 16 19 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.23 5.50 -17.42 -0.10 -0.32 16 22 N -0.92 -27.42 11.39 55.49 0.63 -26.79 16 23 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.55 8.38 -2.97 -0.02 2.53 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.03 7.99 -51.93 -0.42 0.62 16 31 H 0.40 4.28 7.71 -40.82 -0.31 3.96 16 32 H 0.07 0.52 7.80 -51.55 -0.40 0.12 16 33 H 0.07 0.61 8.14 -51.54 -0.42 0.19 16 34 H 0.06 0.39 8.27 -51.05 -0.42 -0.04 16 35 H 0.07 0.46 5.68 -52.10 -0.30 0.17 16 36 H 0.07 0.54 8.20 -51.56 -0.42 0.12 16 37 H 0.07 0.46 8.10 -51.58 -0.42 0.04 16 38 H 0.07 0.59 8.20 -51.56 -0.42 0.17 16 39 H 0.07 0.47 8.10 -51.55 -0.42 0.06 16 40 H 0.06 0.45 8.27 -51.01 -0.42 0.03 16 41 H 0.07 0.48 5.72 -52.08 -0.30 0.18 16 42 H 0.07 0.72 8.14 -51.52 -0.42 0.31 16 43 H 0.07 0.59 7.81 -51.51 -0.40 0.18 16 44 H 0.08 0.97 8.07 -51.99 -0.42 0.55 16 45 H 0.08 1.01 8.08 -51.99 -0.42 0.59 16 46 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 47 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 48 H 0.07 1.90 7.17 -51.93 -0.37 1.53 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -32.12 383.29 -10.90 -43.02 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -9.17 Total: 1.55 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.16 Total: 0.31 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -1.41 Total: -58.65 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.12 -10.90 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969950107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.931 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds