Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46923 * 2 1 4 4 N 1.46501 * 109.46841 * 240.00584 * 2 1 3 5 5 C 1.34777 * 120.00610 * 84.99901 * 4 2 1 6 6 O 1.21284 * 119.99392 * 359.97438 * 5 4 2 7 7 C 1.51491 * 120.00075 * 180.02562 * 5 4 2 8 8 C 1.52482 * 108.84707 * 60.76332 * 7 5 4 9 9 C 1.52179 * 112.51306 * 171.43885 * 8 7 5 10 10 C 1.52275 * 112.53313 * 314.39693 * 9 8 7 11 11 N 1.45853 * 112.30082 * 47.11199 * 10 9 8 12 12 C 1.45840 * 113.92350 * 70.57027 * 11 10 9 13 13 C 1.52218 * 112.43996 * 289.13490 * 12 11 10 14 14 C 1.52130 * 112.77621 * 313.62540 * 13 12 11 15 15 C 1.46482 * 112.04316 * 302.08036 * 11 10 9 16 16 C 1.52994 * 109.47309 * 120.00478 * 2 1 3 17 17 C 1.53950 * 113.74183 * 281.99167 * 16 2 1 18 18 N 1.47807 * 86.03791 * 222.08759 * 17 16 2 19 19 C 1.36942 * 134.45812 * 204.64477 * 18 17 16 20 20 H 1.07993 * 120.00216 * 179.86799 * 19 18 17 21 21 C 1.38817 * 119.99763 * 359.86880 * 19 18 17 22 22 N 1.31628 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46973 * 59.99591 * 23 21 19 25 25 H 1.48503 * 109.47241 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47096 * 299.99910 * 23 21 19 27 27 C 1.47578 * 91.05256 * 24.54806 * 18 17 16 28 28 H 1.09003 * 109.47732 * 55.79992 * 1 2 3 29 29 H 1.09003 * 109.47384 * 175.80256 * 1 2 3 30 30 H 1.09001 * 109.47167 * 295.79685 * 1 2 3 31 31 H 0.97011 * 119.99808 * 264.99702 * 4 2 1 32 32 H 1.09672 * 109.09791 * 292.86893 * 8 7 5 33 33 H 1.09690 * 109.05711 * 50.09793 * 8 7 5 34 34 H 1.10527 * 108.07114 * 195.28441 * 9 8 7 35 35 H 1.08703 * 110.87355 * 79.10043 * 9 8 7 36 36 H 1.09650 * 109.09952 * 285.83694 * 10 9 8 37 37 H 1.09621 * 109.14397 * 168.46358 * 10 9 8 38 38 H 1.09649 * 109.23665 * 167.78503 * 12 11 10 39 39 H 1.09675 * 109.20569 * 50.39704 * 12 11 10 40 40 H 1.10596 * 107.85443 * 194.48520 * 13 12 11 41 41 H 1.08726 * 110.80244 * 78.62907 * 13 12 11 42 42 H 1.09716 * 109.26169 * 283.37810 * 14 13 12 43 43 H 1.09735 * 109.20201 * 166.09572 * 14 13 12 44 44 H 1.08886 * 109.93912 * 305.17801 * 15 11 10 45 45 H 1.08886 * 109.92747 * 184.15533 * 15 11 10 46 46 H 1.08995 * 112.94878 * 53.58416 * 16 2 1 47 47 H 1.08997 * 113.76576 * 336.35268 * 17 16 2 48 48 H 1.09002 * 113.76932 * 107.74515 * 17 16 2 49 49 H 0.96994 * 119.99712 * 180.02562 * 22 21 19 50 50 H 1.08999 * 113.77463 * 221.15109 * 27 18 17 51 51 H 1.09004 * 113.76791 * 89.75964 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8580 1.1585 -2.4117 7 6 2.6513 -0.7324 -3.5943 8 6 1.6901 -1.8662 -3.9348 9 6 2.0000 -2.5089 -5.2789 10 6 2.2615 -1.4805 -6.3711 11 7 3.1823 -0.4355 -5.9383 12 6 4.5588 -0.8896 -5.7772 13 6 4.7323 -1.8016 -4.5709 14 6 4.0552 -1.2601 -3.3209 15 6 2.6941 0.2703 -4.7512 16 6 2.0400 -0.7213 1.2491 17 6 1.9705 0.1314 2.5290 18 7 3.3068 -0.4164 2.8436 19 6 4.0154 -0.6124 3.9989 20 1 5.0037 -1.0459 3.9593 21 6 3.4632 -0.2539 5.2210 22 7 2.2588 0.2749 5.2693 23 14 4.4299 -0.5206 6.7970 24 1 5.6979 0.2500 6.7363 25 1 3.6249 -0.0577 7.9559 26 1 4.7357 -1.9655 6.9516 27 6 3.5697 -0.6694 1.4136 28 1 -0.3635 0.5776 -0.8499 29 1 -0.3634 -1.0249 -0.0752 30 1 -0.3633 0.4472 0.9253 31 1 2.2489 -1.6318 -1.1528 32 1 1.7420 -2.6289 -3.1484 33 1 0.6655 -1.4748 -3.9494 34 1 1.1240 -3.1115 -5.5809 35 1 2.8333 -3.2017 -5.1940 36 1 1.3102 -1.0236 -6.6688 37 1 2.6763 -1.9873 -7.2502 38 1 5.2160 -0.0188 -5.6675 39 1 4.8695 -1.4271 -6.6813 40 1 5.8153 -1.8865 -4.3630 41 1 4.3865 -2.8078 -4.7946 42 1 4.6660 -0.4518 -2.8997 43 1 3.9978 -2.0562 -2.5678 44 1 1.6940 0.6595 -4.9357 45 1 3.3685 1.0880 -4.5020 46 1 1.6199 -1.7205 1.3642 47 1 1.9688 1.2052 2.3419 48 1 1.1913 -0.1818 3.2239 49 1 1.8731 0.5257 6.1231 50 1 4.0650 -1.6208 1.2195 51 1 4.0389 0.1687 0.8982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969950107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = -13.510768 kcal Electronic energy + Delta-G solvation = -28794.959677 eV Core-core repulsion = 25115.123880 eV Total energy + Delta-G solvation = -3679.835797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 4.70 seconds Orbital eigenvalues (eV) -42.16940 -40.45467 -39.33671 -36.20960 -34.69062 -34.02261 -33.99822 -31.85765 -31.42069 -29.34151 -27.33999 -26.66960 -25.87566 -25.07834 -24.18854 -22.69436 -22.39359 -21.40741 -20.69513 -19.40735 -18.81411 -18.13626 -17.39440 -16.84669 -16.68738 -16.08222 -15.99382 -15.83353 -15.64769 -15.51117 -15.04327 -14.87294 -14.55674 -14.22678 -14.09056 -13.89338 -13.57869 -13.53360 -13.31150 -13.26567 -13.10911 -12.96074 -12.67152 -12.49823 -12.41653 -12.39352 -12.33377 -12.05375 -11.92248 -11.84536 -11.80352 -11.62839 -11.58041 -11.24082 -10.87524 -10.72261 -10.55394 -10.03116 -8.99725 -8.94061 -7.92074 -5.25952 1.43942 1.47579 1.53781 1.66830 2.15498 2.46097 3.06338 3.27804 3.36971 3.48604 3.63226 3.65183 3.74725 3.95323 3.99944 4.08945 4.13576 4.24146 4.25661 4.26739 4.42813 4.44101 4.52451 4.54675 4.55614 4.71084 4.73899 4.82933 4.84104 4.86628 4.93320 4.97738 5.01251 5.03109 5.07551 5.10302 5.11941 5.13268 5.19641 5.22735 5.28105 5.30791 5.49353 5.51332 5.55285 5.63117 5.92111 6.18688 6.41897 6.60386 6.90048 7.29368 7.58974 8.54700 9.24723 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.002786 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.905795 B =10049.034169 C =10609.835073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 H 0.057 0.943 4 N -0.705 5.705 5 C 0.520 3.480 6 O -0.584 6.584 7 C -0.093 4.093 8 C -0.099 4.099 9 C -0.147 4.147 10 C 0.062 3.938 11 N -0.553 5.553 12 C 0.063 3.937 13 C -0.145 4.145 14 C -0.101 4.101 15 C 0.096 3.904 16 C -0.108 4.108 17 C 0.171 3.829 18 N -0.643 5.643 19 C -0.239 4.239 20 H 0.083 0.917 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.980 3.020 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.129 3.871 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.411 0.589 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.009 0.991 48 H 0.047 0.953 49 H 0.249 0.751 50 H 0.062 0.938 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 -9.457 -25.547 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.075 0.925 4 N -0.355 5.355 5 C 0.307 3.693 6 O -0.463 6.463 7 C -0.098 4.098 8 C -0.137 4.137 9 C -0.185 4.185 10 C -0.065 4.065 11 N -0.274 5.274 12 C -0.065 4.065 13 C -0.184 4.184 14 C -0.139 4.139 15 C -0.033 4.033 16 C -0.128 4.128 17 C 0.045 3.955 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.101 0.899 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.004 3.996 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.247 0.753 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.123 0.877 47 H 0.027 0.973 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.080 0.920 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.189 -8.316 -25.623 26.939 hybrid contribution 0.447 -0.254 2.187 2.247 sum 0.258 -8.569 -23.436 24.955 Atomic orbital electron populations 1.22025 0.94176 1.02840 1.01810 1.20727 0.94644 0.95768 0.83255 0.92489 1.45971 1.66364 1.14447 1.08736 1.21283 0.76280 0.86675 0.85078 1.90678 1.52057 1.17973 1.85623 1.21238 0.97522 0.98149 0.92852 1.21302 0.97299 0.95969 0.99087 1.21954 1.03707 0.98770 0.94111 1.21872 0.96381 0.91041 0.97226 1.60227 1.03018 1.30265 1.33840 1.21844 0.88355 0.98452 0.97833 1.21929 1.01512 1.00371 0.94607 1.21305 0.92599 1.00918 0.99112 1.21592 1.00691 0.94339 0.86680 1.23436 0.95979 1.00318 0.93039 1.22124 0.88240 0.93635 0.91527 1.46410 1.17145 1.72261 1.01155 1.19411 0.98772 1.34410 0.84176 0.89874 1.25655 0.98136 1.01505 1.00749 1.69998 1.16783 1.48672 1.24765 0.85139 0.77395 0.78167 0.78549 1.20614 1.21986 1.19824 1.22649 0.94829 0.98295 0.83810 0.93118 0.90679 0.91943 0.75283 0.90227 0.92535 0.90411 0.90158 0.91371 0.89228 0.91768 0.89118 0.90945 0.89826 0.93345 0.90329 0.91426 0.92023 0.87660 0.97314 0.93502 0.94203 0.91988 0.95297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.46 71.98 0.68 -3.46 16 2 C 0.16 4.92 2.29 44.99 0.10 5.02 16 3 H 0.06 2.12 7.49 -2.39 -0.02 2.10 16 4 N -0.70 -17.06 4.76 -441.64 -2.10 -19.16 16 5 C 0.52 13.77 6.32 87.91 0.56 14.32 16 6 O -0.58 -20.71 15.58 -3.04 -0.05 -20.75 16 7 C -0.09 -1.76 0.57 -52.98 -0.03 -1.79 16 8 C -0.10 -1.42 4.51 30.15 0.14 -1.28 16 9 C -0.15 -1.54 5.14 30.08 0.15 -1.39 16 10 C 0.06 0.77 5.77 86.26 0.50 1.27 16 11 N -0.55 -9.13 4.79 -902.23 -4.32 -13.45 16 12 C 0.06 0.85 5.77 86.25 0.50 1.35 16 13 C -0.15 -1.78 5.11 30.05 0.15 -1.63 16 14 C -0.10 -1.68 4.51 30.13 0.14 -1.54 16 15 C 0.10 2.06 4.18 86.44 0.36 2.42 16 16 C -0.11 -3.77 3.35 -10.13 -0.03 -3.80 16 17 C 0.17 8.16 6.90 86.44 0.60 8.76 16 18 N -0.64 -33.37 3.70 -716.11 -2.65 -36.02 16 19 C -0.24 -13.62 10.70 84.03 0.90 -12.72 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 22 N -0.95 -58.19 11.39 21.65 0.25 -57.94 16 23 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.13 5.09 8.38 86.49 0.72 5.81 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.82 7.99 -2.39 -0.02 1.81 16 31 H 0.41 7.69 7.71 -92.70 -0.71 6.98 16 32 H 0.08 0.95 7.80 -2.03 -0.02 0.93 16 33 H 0.06 0.94 8.14 -2.02 -0.02 0.92 16 34 H 0.08 0.65 8.27 -1.57 -0.01 0.64 16 35 H 0.08 0.71 5.68 -2.54 -0.01 0.69 16 36 H 0.07 0.90 8.20 -2.04 -0.02 0.88 16 37 H 0.09 0.82 8.10 -2.06 -0.02 0.81 16 38 H 0.06 0.97 8.20 -2.04 -0.02 0.96 16 39 H 0.09 0.91 8.10 -2.03 -0.02 0.89 16 40 H 0.07 0.81 8.27 -1.53 -0.01 0.80 16 41 H 0.08 0.81 5.72 -2.53 -0.01 0.79 16 42 H 0.05 0.99 8.14 -2.01 -0.02 0.98 16 43 H 0.08 1.12 7.81 -1.99 -0.02 1.11 16 44 H 0.07 1.63 8.07 -2.45 -0.02 1.61 16 45 H 0.06 1.57 8.08 -2.45 -0.02 1.55 16 46 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 47 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 48 H 0.05 2.48 7.17 -2.39 -0.02 2.47 16 49 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.03 1.18 8.10 -2.38 -0.02 1.16 16 Total: -1.00 -71.67 383.29 -0.73 -72.40 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.22 Total: 18.93 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.90 Total: 7.92 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -8.83 Total: -126.57 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -71.67 -0.73 -72.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969950107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.888 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.70 seconds