Wall clock time and date at job start Fri Apr 10 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99896 * 2 1 4 4 H 1.07991 * 120.00047 * 204.86834 * 3 2 1 5 5 C 1.38809 * 119.99852 * 24.87251 * 3 2 1 6 6 N 1.31625 * 120.00294 * 5.72237 * 5 3 2 7 7 Si 1.86799 * 120.00132 * 185.72380 * 5 3 2 8 8 H 1.48502 * 109.47009 * 89.99582 * 7 5 3 9 9 H 1.48499 * 109.47740 * 209.99950 * 7 5 3 10 10 H 1.48508 * 109.46978 * 330.00338 * 7 5 3 11 11 C 1.46500 * 119.99593 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.87790 * 179.29878 * 11 2 1 13 13 C 1.55151 * 111.03816 * 55.39922 * 11 2 1 14 14 C 1.54327 * 102.93955 * 206.40471 * 13 11 2 15 15 N 1.47022 * 107.27141 * 22.19488 * 14 13 11 16 16 C 1.34778 * 125.64706 * 181.09615 * 15 14 13 17 17 O 1.21281 * 119.99592 * 174.35621 * 16 15 14 18 18 C 1.51468 * 119.99956 * 354.35911 * 16 15 14 19 19 C 1.52272 * 108.97339 * 59.91693 * 18 16 15 20 20 C 1.52233 * 113.00197 * 170.01626 * 19 18 16 21 21 C 1.52448 * 112.26671 * 314.85516 * 20 19 18 22 22 N 1.46102 * 111.59426 * 48.66130 * 21 20 19 23 23 C 1.45719 * 114.13293 * 68.26940 * 22 21 20 24 24 C 1.52380 * 112.67986 * 288.41484 * 23 22 21 25 25 C 1.52396 * 112.06493 * 312.70092 * 24 23 22 26 26 C 1.46547 * 111.31594 * 299.61864 * 22 21 20 27 27 C 1.47427 * 108.70340 * 1.05370 * 15 14 13 28 28 H 1.08996 * 109.47187 * 275.09472 * 1 2 3 29 29 H 1.09003 * 109.47262 * 35.09446 * 1 2 3 30 30 H 1.09005 * 109.47043 * 155.09263 * 1 2 3 31 31 H 0.97000 * 119.99669 * 179.97438 * 6 5 3 32 32 H 1.09005 * 110.72173 * 324.76617 * 13 11 2 33 33 H 1.08995 * 110.72399 * 88.04387 * 13 11 2 34 34 H 1.08997 * 109.88357 * 262.77415 * 14 13 11 35 35 H 1.09001 * 109.88109 * 141.60618 * 14 13 11 36 36 H 1.09764 * 109.09535 * 291.55473 * 19 18 16 37 37 H 1.09784 * 109.04326 * 48.54719 * 19 18 16 38 38 H 1.10662 * 107.84009 * 196.41547 * 20 19 18 39 39 H 1.08390 * 111.49879 * 80.15957 * 20 19 18 40 40 H 1.09498 * 109.19973 * 287.68056 * 21 20 19 41 41 H 1.09457 * 109.25928 * 169.72194 * 21 20 19 42 42 H 1.09666 * 109.23769 * 167.11497 * 23 22 21 43 43 H 1.09679 * 109.27257 * 49.72170 * 23 22 21 44 44 H 1.10641 * 107.70554 * 194.32308 * 24 23 22 45 45 H 1.08322 * 111.44088 * 78.02808 * 24 23 22 46 46 H 1.09528 * 109.32969 * 286.83283 * 25 24 23 47 47 H 1.09516 * 109.32808 * 168.77377 * 25 24 23 48 48 H 1.08855 * 109.95610 * 306.41555 * 26 22 21 49 49 H 1.08862 * 109.90052 * 185.29516 * 26 22 21 50 50 H 1.08996 * 110.36697 * 217.03487 * 27 15 14 51 51 H 1.09003 * 110.45599 * 94.75948 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1545 1.2293 -0.3933 5 6 1.5522 2.3323 0.5056 6 7 0.3736 2.2585 1.0870 7 14 2.4206 3.9798 0.3610 8 1 2.0281 4.6362 -0.9119 9 1 2.0341 4.8453 1.5040 10 1 3.8904 3.7675 0.3756 11 6 2.1975 -1.2688 -0.0006 12 1 3.2736 -1.0961 -0.0130 13 6 1.7637 -2.1617 -1.1929 14 6 2.0568 -3.5879 -0.6812 15 7 2.0789 -3.5286 0.7877 16 6 2.3238 -4.5663 1.6121 17 8 2.4181 -4.3822 2.8071 18 6 2.4815 -5.9624 1.0461 19 6 3.6501 -5.9717 0.0698 20 6 4.0456 -7.3740 -0.3712 21 6 4.1156 -8.3492 0.7985 22 7 2.9220 -8.2694 1.6373 23 6 1.7082 -8.7553 0.9939 24 6 1.2060 -7.8179 -0.0974 25 6 1.1760 -6.3659 0.3643 26 6 2.7576 -6.9278 2.2035 27 6 1.7897 -2.1458 1.2094 28 1 -0.3633 0.0913 1.0236 29 1 -0.3634 0.8409 -0.5908 30 1 -0.3633 -0.9321 -0.4328 31 1 -0.0437 3.0595 1.4406 32 1 0.7010 -2.0375 -1.4013 33 1 2.3598 -1.9396 -2.0780 34 1 3.0247 -3.9237 -1.0532 35 1 1.2731 -4.2690 -1.0128 36 1 3.3838 -5.3788 -0.8147 37 1 4.5148 -5.4867 0.5415 38 1 5.0551 -7.3159 -0.8208 39 1 3.3885 -7.7461 -1.1488 40 1 4.9996 -8.1228 1.4037 41 1 4.2208 -9.3683 0.4132 42 1 0.9226 -8.8768 1.7495 43 1 1.9008 -9.7421 0.5558 44 1 0.1696 -8.1150 -0.3455 45 1 1.7812 -7.9272 -1.0088 46 1 0.3456 -6.2251 1.0644 47 1 1.0051 -5.7144 -0.4993 48 1 3.6678 -6.6283 2.7199 49 1 1.9179 -6.9183 2.8963 50 1 2.3838 -1.8842 2.0850 51 1 0.7275 -2.0270 1.4232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971777297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:03 Heat of formation + Delta-G solvation = 4.738934 kcal Electronic energy + Delta-G solvation = -29372.967101 eV Core-core repulsion = 25693.922671 eV Total energy + Delta-G solvation = -3679.044430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.35793 -39.10525 -37.33089 -34.94724 -33.61954 -33.33863 -31.50919 -30.96771 -29.74568 -27.95773 -26.66720 -26.08451 -24.63098 -23.77092 -22.73122 -22.03852 -21.75919 -19.38261 -19.24032 -18.77838 -17.08299 -16.76775 -16.15277 -15.86685 -15.42209 -15.22946 -14.83465 -14.67876 -14.51100 -13.98786 -13.50565 -13.38881 -13.23995 -13.18612 -13.03190 -12.77318 -12.57917 -12.38818 -12.21996 -12.05606 -11.91163 -11.73097 -11.63648 -11.15868 -11.11834 -11.03886 -10.88948 -10.82366 -10.73079 -10.50839 -10.43364 -10.25713 -10.06939 -9.91197 -9.82664 -9.42530 -8.61402 -8.28474 -8.24856 -6.81597 -5.78379 -3.28674 2.82136 3.20358 3.35303 3.41542 3.42961 3.77442 4.30960 4.42953 4.45422 4.46691 4.67758 4.70655 4.88075 4.89127 4.95003 4.97384 5.10565 5.17750 5.23881 5.29264 5.32253 5.41212 5.46689 5.56015 5.59056 5.63951 5.65175 5.71613 5.74441 5.80620 5.84816 5.87230 5.91818 5.98648 6.04634 6.12444 6.14245 6.27915 6.36731 6.53527 6.63215 6.77771 6.85527 6.92699 7.08755 7.35152 7.70277 7.76502 7.82923 8.33386 8.39802 9.17465 9.78083 10.27417 11.25694 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.002939 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.882786 B = 9525.820619 C = 9542.222494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.077 0.923 13 C -0.155 4.155 14 C 0.095 3.905 15 N -0.610 5.610 16 C 0.534 3.466 17 O -0.543 6.543 18 C -0.098 4.098 19 C -0.114 4.114 20 C -0.151 4.151 21 C 0.065 3.935 22 N -0.546 5.546 23 C 0.067 3.933 24 C -0.151 4.151 25 C -0.109 4.109 26 C 0.091 3.909 27 C 0.085 3.915 28 H 0.031 0.969 29 H 0.046 0.954 30 H -0.001 1.001 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -22.209 -5.736 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.195 4.195 14 C -0.028 4.028 15 N -0.343 5.343 16 C 0.321 3.679 17 O -0.421 6.421 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.190 4.190 21 C -0.063 4.063 22 N -0.267 5.267 23 C -0.061 4.061 24 C -0.190 4.190 25 C -0.147 4.147 26 C -0.037 4.037 27 C -0.039 4.039 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.546 -22.301 -4.595 23.044 hybrid contribution 0.119 1.602 -0.799 1.794 sum 3.665 -20.699 -5.394 21.702 Atomic orbital electron populations 1.20842 0.82348 0.95466 0.99601 1.43828 1.01928 0.99816 1.85045 1.19226 0.99467 0.85739 1.34656 0.91246 1.25145 0.97310 0.98867 0.97915 1.70055 1.16008 1.27759 1.41233 0.86199 0.79120 0.83668 0.77184 1.21416 1.21602 1.20408 1.21439 0.96317 0.85795 0.90126 0.90522 1.23232 1.02853 0.93051 1.00406 1.22430 1.00769 0.99033 0.80586 1.48498 1.69169 1.09786 1.06884 1.20359 0.76233 0.85321 0.86012 1.90690 1.51200 1.84952 1.15235 1.21218 0.97028 0.93294 0.98765 1.21519 0.96899 0.97377 0.99319 1.22028 1.02196 0.95588 0.99157 1.21859 0.92839 0.98672 0.92946 1.60310 1.03664 1.24873 1.37825 1.21756 0.91631 0.97155 0.95554 1.22049 1.02194 0.95189 0.99555 1.21517 0.95570 0.96565 1.01050 1.21826 1.03363 0.84556 0.93958 1.23109 1.01086 0.79116 1.00573 0.95055 0.93514 0.98282 0.93581 0.90416 0.90665 0.91273 0.91686 0.90330 0.91691 0.92013 0.91195 0.90827 0.90987 0.90937 0.91068 0.92007 0.91143 0.91621 0.90706 0.89870 0.89913 0.90964 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.69 59.85 0.46 4.32 16 2 N -0.59 -14.16 2.96 -171.04 -0.51 -14.66 16 3 C -0.26 -7.00 9.62 -15.06 -0.14 -7.14 16 4 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 5 C 0.01 0.18 5.24 -17.43 -0.09 0.08 16 6 N -0.91 -26.01 10.45 55.49 0.58 -25.43 16 7 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16 8 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.42 3.54 -65.79 -0.23 3.19 16 12 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 13 C -0.16 -2.40 6.49 -24.90 -0.16 -2.56 16 14 C 0.09 1.23 5.27 -3.06 -0.02 1.21 16 15 N -0.61 -9.77 3.31 -170.19 -0.56 -10.33 16 16 C 0.53 8.60 6.46 -10.61 -0.07 8.53 16 17 O -0.54 -10.86 16.15 5.56 0.09 -10.77 16 18 C -0.10 -1.16 0.43 -155.69 -0.07 -1.22 16 19 C -0.11 -1.15 4.21 -27.49 -0.12 -1.27 16 20 C -0.15 -1.21 5.12 -27.40 -0.14 -1.35 16 21 C 0.06 0.54 5.79 -4.54 -0.03 0.51 16 22 N -0.55 -5.38 4.80 -236.27 -1.13 -6.51 16 23 C 0.07 0.56 5.76 -4.78 -0.03 0.53 16 24 C -0.15 -1.22 5.14 -27.36 -0.14 -1.36 16 25 C -0.11 -1.13 4.49 -27.19 -0.12 -1.26 16 26 C 0.09 1.10 4.18 -3.90 -0.02 1.08 16 27 C 0.09 1.66 6.52 -2.53 -0.02 1.65 16 28 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 29 H 0.05 1.20 7.26 -51.93 -0.38 0.83 16 30 H 0.00 -0.02 6.17 -51.93 -0.32 -0.35 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.78 5.61 -51.93 -0.29 0.49 16 35 H 0.07 0.74 5.42 -51.93 -0.28 0.46 16 36 H 0.08 0.76 4.68 -51.50 -0.24 0.52 16 37 H 0.06 0.73 8.13 -51.48 -0.42 0.32 16 38 H 0.06 0.44 8.28 -50.98 -0.42 0.02 16 39 H 0.07 0.52 5.61 -52.27 -0.29 0.23 16 40 H 0.07 0.63 8.18 -51.65 -0.42 0.20 16 41 H 0.07 0.51 8.13 -51.67 -0.42 0.09 16 42 H 0.07 0.62 8.20 -51.55 -0.42 0.20 16 43 H 0.07 0.50 8.13 -51.54 -0.42 0.08 16 44 H 0.06 0.45 8.28 -50.99 -0.42 0.03 16 45 H 0.07 0.53 5.58 -52.31 -0.29 0.24 16 46 H 0.07 0.76 8.16 -51.63 -0.42 0.34 16 47 H 0.07 0.76 4.95 -51.64 -0.26 0.50 16 48 H 0.08 1.09 8.05 -52.01 -0.42 0.67 16 49 H 0.08 1.09 8.09 -52.01 -0.42 0.67 16 50 H 0.07 1.56 7.98 -51.93 -0.41 1.14 16 51 H 0.07 1.39 7.20 -51.93 -0.37 1.02 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -30.35 362.31 -10.46 -40.80 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.43 Total: -0.03 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.93 Total: 4.95 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -1.62 Total: -56.94 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.35 -10.46 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971777297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.542 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds