Wall clock time and date at job start Fri Apr 10 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99896 * 2 1 4 4 H 1.07991 * 120.00047 * 204.86834 * 3 2 1 5 5 C 1.38809 * 119.99852 * 24.87251 * 3 2 1 6 6 N 1.31625 * 120.00294 * 5.72237 * 5 3 2 7 7 Si 1.86799 * 120.00132 * 185.72380 * 5 3 2 8 8 H 1.48502 * 109.47009 * 89.99582 * 7 5 3 9 9 H 1.48499 * 109.47740 * 209.99950 * 7 5 3 10 10 H 1.48508 * 109.46978 * 330.00338 * 7 5 3 11 11 C 1.46500 * 119.99593 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.87790 * 179.29878 * 11 2 1 13 13 C 1.55151 * 111.03816 * 55.39922 * 11 2 1 14 14 C 1.54327 * 102.93955 * 206.40471 * 13 11 2 15 15 N 1.47022 * 107.27141 * 22.19488 * 14 13 11 16 16 C 1.34778 * 125.64706 * 181.09615 * 15 14 13 17 17 O 1.21281 * 119.99592 * 174.35621 * 16 15 14 18 18 C 1.51468 * 119.99956 * 354.35911 * 16 15 14 19 19 C 1.52272 * 108.97339 * 59.91693 * 18 16 15 20 20 C 1.52233 * 113.00197 * 170.01626 * 19 18 16 21 21 C 1.52448 * 112.26671 * 314.85516 * 20 19 18 22 22 N 1.46102 * 111.59426 * 48.66130 * 21 20 19 23 23 C 1.45719 * 114.13293 * 68.26940 * 22 21 20 24 24 C 1.52380 * 112.67986 * 288.41484 * 23 22 21 25 25 C 1.52396 * 112.06493 * 312.70092 * 24 23 22 26 26 C 1.46547 * 111.31594 * 299.61864 * 22 21 20 27 27 C 1.47427 * 108.70340 * 1.05370 * 15 14 13 28 28 H 1.08996 * 109.47187 * 275.09472 * 1 2 3 29 29 H 1.09003 * 109.47262 * 35.09446 * 1 2 3 30 30 H 1.09005 * 109.47043 * 155.09263 * 1 2 3 31 31 H 0.97000 * 119.99669 * 179.97438 * 6 5 3 32 32 H 1.09005 * 110.72173 * 324.76617 * 13 11 2 33 33 H 1.08995 * 110.72399 * 88.04387 * 13 11 2 34 34 H 1.08997 * 109.88357 * 262.77415 * 14 13 11 35 35 H 1.09001 * 109.88109 * 141.60618 * 14 13 11 36 36 H 1.09764 * 109.09535 * 291.55473 * 19 18 16 37 37 H 1.09784 * 109.04326 * 48.54719 * 19 18 16 38 38 H 1.10662 * 107.84009 * 196.41547 * 20 19 18 39 39 H 1.08390 * 111.49879 * 80.15957 * 20 19 18 40 40 H 1.09498 * 109.19973 * 287.68056 * 21 20 19 41 41 H 1.09457 * 109.25928 * 169.72194 * 21 20 19 42 42 H 1.09666 * 109.23769 * 167.11497 * 23 22 21 43 43 H 1.09679 * 109.27257 * 49.72170 * 23 22 21 44 44 H 1.10641 * 107.70554 * 194.32308 * 24 23 22 45 45 H 1.08322 * 111.44088 * 78.02808 * 24 23 22 46 46 H 1.09528 * 109.32969 * 286.83283 * 25 24 23 47 47 H 1.09516 * 109.32808 * 168.77377 * 25 24 23 48 48 H 1.08855 * 109.95610 * 306.41555 * 26 22 21 49 49 H 1.08862 * 109.90052 * 185.29516 * 26 22 21 50 50 H 1.08996 * 110.36697 * 217.03487 * 27 15 14 51 51 H 1.09003 * 110.45599 * 94.75948 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1545 1.2293 -0.3933 5 6 1.5522 2.3323 0.5056 6 7 0.3736 2.2585 1.0870 7 14 2.4206 3.9798 0.3610 8 1 2.0281 4.6362 -0.9119 9 1 2.0341 4.8453 1.5040 10 1 3.8904 3.7675 0.3756 11 6 2.1975 -1.2688 -0.0006 12 1 3.2736 -1.0961 -0.0130 13 6 1.7637 -2.1617 -1.1929 14 6 2.0568 -3.5879 -0.6812 15 7 2.0789 -3.5286 0.7877 16 6 2.3238 -4.5663 1.6121 17 8 2.4181 -4.3822 2.8071 18 6 2.4815 -5.9624 1.0461 19 6 3.6501 -5.9717 0.0698 20 6 4.0456 -7.3740 -0.3712 21 6 4.1156 -8.3492 0.7985 22 7 2.9220 -8.2694 1.6373 23 6 1.7082 -8.7553 0.9939 24 6 1.2060 -7.8179 -0.0974 25 6 1.1760 -6.3659 0.3643 26 6 2.7576 -6.9278 2.2035 27 6 1.7897 -2.1458 1.2094 28 1 -0.3633 0.0913 1.0236 29 1 -0.3634 0.8409 -0.5908 30 1 -0.3633 -0.9321 -0.4328 31 1 -0.0437 3.0595 1.4406 32 1 0.7010 -2.0375 -1.4013 33 1 2.3598 -1.9396 -2.0780 34 1 3.0247 -3.9237 -1.0532 35 1 1.2731 -4.2690 -1.0128 36 1 3.3838 -5.3788 -0.8147 37 1 4.5148 -5.4867 0.5415 38 1 5.0551 -7.3159 -0.8208 39 1 3.3885 -7.7461 -1.1488 40 1 4.9996 -8.1228 1.4037 41 1 4.2208 -9.3683 0.4132 42 1 0.9226 -8.8768 1.7495 43 1 1.9008 -9.7421 0.5558 44 1 0.1696 -8.1150 -0.3455 45 1 1.7812 -7.9272 -1.0088 46 1 0.3456 -6.2251 1.0644 47 1 1.0051 -5.7144 -0.4993 48 1 3.6678 -6.6283 2.7199 49 1 1.9179 -6.9183 2.8963 50 1 2.3838 -1.8842 2.0850 51 1 0.7275 -2.0270 1.4232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971777297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:02 Heat of formation + Delta-G solvation = -14.968981 kcal Electronic energy + Delta-G solvation = -29373.821701 eV Core-core repulsion = 25693.922671 eV Total energy + Delta-G solvation = -3679.899030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.35130 -40.30459 -38.80365 -36.66432 -34.66299 -34.00956 -33.26934 -31.79756 -31.22486 -29.47706 -28.09364 -27.39004 -25.95518 -24.70816 -24.34776 -23.09551 -22.44916 -20.99649 -20.45865 -19.60448 -18.98571 -17.97175 -17.55189 -16.94053 -16.60212 -16.36721 -16.07204 -15.81347 -15.57119 -15.35186 -14.97491 -14.62184 -14.35956 -14.33024 -14.19819 -13.97701 -13.84789 -13.54750 -13.42669 -13.39138 -13.21150 -12.79011 -12.71159 -12.52949 -12.42924 -12.40767 -12.26370 -12.10025 -12.05051 -11.89143 -11.87697 -11.67120 -11.65908 -11.31253 -10.73549 -10.67879 -10.66291 -9.66738 -9.00903 -8.79560 -7.85957 -5.38400 1.45689 1.46936 1.54113 1.55734 1.90487 2.48643 3.00169 3.26410 3.34390 3.52344 3.57914 3.62842 3.84866 3.89412 3.97782 4.00457 4.12768 4.17137 4.21996 4.26950 4.27257 4.35937 4.42198 4.48670 4.55056 4.64169 4.70217 4.74014 4.81342 4.84950 4.94632 4.98216 5.00947 5.03319 5.06733 5.11563 5.12444 5.17301 5.19399 5.24301 5.28361 5.32536 5.41720 5.50807 5.62022 5.72126 6.14439 6.29987 6.41361 6.53558 7.07446 7.12309 7.81186 8.25612 9.16538 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.002939 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.882786 B = 9525.820619 C = 9542.222494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.268 4.268 4 H 0.075 0.925 5 C -0.051 4.051 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.282 1.282 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.167 3.833 12 H 0.072 0.928 13 C -0.140 4.140 14 C 0.098 3.902 15 N -0.609 5.609 16 C 0.526 3.474 17 O -0.593 6.593 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.145 4.145 21 C 0.061 3.939 22 N -0.552 5.552 23 C 0.063 3.937 24 C -0.144 4.144 25 C -0.107 4.107 26 C 0.096 3.904 27 C 0.096 3.904 28 H -0.003 1.003 29 H 0.021 0.979 30 H 0.033 0.967 31 H 0.248 0.752 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.038 0.962 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -24.840 -8.959 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.398 4.398 4 H 0.093 0.907 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.800 3.200 8 H -0.208 1.208 9 H -0.224 1.224 10 H -0.193 1.193 11 C 0.058 3.942 12 H 0.090 0.910 13 C -0.180 4.180 14 C -0.023 4.023 15 N -0.341 5.341 16 C 0.315 3.685 17 O -0.473 6.473 18 C -0.090 4.090 19 C -0.149 4.149 20 C -0.183 4.183 21 C -0.067 4.067 22 N -0.273 5.273 23 C -0.064 4.064 24 C -0.183 4.183 25 C -0.145 4.145 26 C -0.033 4.033 27 C -0.030 4.030 28 H 0.015 0.985 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.056 0.944 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.607 -24.986 -7.868 26.597 hybrid contribution -0.173 2.343 0.270 2.365 sum 4.435 -22.643 -7.598 24.292 Atomic orbital electron populations 1.20512 0.82572 0.96025 0.97307 1.44003 1.02091 1.00816 1.85387 1.19602 0.99679 0.86887 1.33657 0.90689 1.25925 0.98123 1.02270 0.98279 1.70242 1.17466 1.28096 1.42720 0.85192 0.78499 0.79512 0.76766 1.20822 1.22440 1.19291 1.21586 0.95717 0.84745 0.92134 0.90978 1.23096 1.02886 0.92998 0.99002 1.22656 1.03421 0.98120 0.78112 1.48542 1.68887 1.08193 1.08498 1.21335 0.74819 0.86845 0.85476 1.90662 1.53225 1.85844 1.17602 1.21197 0.98992 0.89593 0.99186 1.21542 0.95243 0.99332 0.98794 1.21980 1.03541 0.93638 0.99171 1.21964 0.91719 1.00122 0.92845 1.60289 1.05011 1.22906 1.39057 1.21859 0.90764 0.98245 0.95580 1.22004 1.03561 0.92937 0.99784 1.21538 0.93651 0.98701 1.00611 1.21612 1.01485 0.86289 0.93931 1.22679 0.99130 0.81719 0.99446 0.98476 0.96028 0.94850 0.94250 0.90748 0.88467 0.88460 0.88795 0.89134 0.93305 0.90429 0.89424 0.91618 0.88750 0.91716 0.88758 0.90528 0.89332 0.93477 0.89807 0.91872 0.92049 0.94365 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 7.69 127.77 0.98 9.81 16 2 N -0.60 -29.50 2.96 -695.04 -2.06 -31.55 16 3 C -0.27 -14.52 9.62 84.03 0.81 -13.72 16 4 H 0.08 3.89 7.83 -2.92 -0.02 3.87 16 5 C -0.05 -2.84 5.24 84.86 0.44 -2.39 16 6 N -0.94 -55.82 10.45 21.65 0.23 -55.60 16 7 Si 0.97 44.95 29.56 68.60 2.03 46.98 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.17 6.55 3.54 46.38 0.16 6.72 16 12 H 0.07 2.87 7.95 -2.39 -0.02 2.85 16 13 C -0.14 -3.95 6.49 31.78 0.21 -3.74 16 14 C 0.10 2.23 5.27 86.73 0.46 2.68 16 15 N -0.61 -19.22 3.31 -810.76 -2.69 -21.90 16 16 C 0.53 17.18 6.46 87.90 0.57 17.75 16 17 O -0.59 -25.09 16.15 -3.03 -0.05 -25.14 16 18 C -0.08 -1.90 0.43 -52.94 -0.02 -1.92 16 19 C -0.11 -1.94 4.21 30.10 0.13 -1.81 16 20 C -0.14 -1.71 5.12 30.16 0.15 -1.55 16 21 C 0.06 0.83 5.79 86.27 0.50 1.33 16 22 N -0.55 -9.83 4.80 -901.41 -4.33 -14.15 16 23 C 0.06 0.86 5.76 86.32 0.50 1.36 16 24 C -0.14 -1.76 5.14 30.19 0.16 -1.60 16 25 C -0.11 -1.95 4.49 30.30 0.14 -1.82 16 26 C 0.10 2.32 4.18 86.45 0.36 2.68 16 27 C 0.10 3.86 6.52 86.85 0.57 4.43 16 28 H 0.00 -0.17 7.34 -2.39 -0.02 -0.19 16 29 H 0.02 1.13 7.26 -2.39 -0.02 1.11 16 30 H 0.03 1.37 6.17 -2.38 -0.01 1.35 16 31 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.07 2.18 6.17 -2.38 -0.01 2.17 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.10 1.75 5.61 -2.39 -0.01 1.74 16 35 H 0.09 1.69 5.42 -2.39 -0.01 1.68 16 36 H 0.09 1.34 4.68 -1.98 -0.01 1.33 16 37 H 0.05 1.02 8.13 -1.97 -0.02 1.00 16 38 H 0.08 0.75 8.28 -1.49 -0.01 0.74 16 39 H 0.09 0.78 5.61 -2.71 -0.02 0.77 16 40 H 0.07 0.99 8.18 -2.12 -0.02 0.98 16 41 H 0.09 0.91 8.13 -2.14 -0.02 0.89 16 42 H 0.06 0.98 8.20 -2.03 -0.02 0.97 16 43 H 0.09 0.91 8.13 -2.03 -0.02 0.90 16 44 H 0.08 0.78 8.28 -1.50 -0.01 0.77 16 45 H 0.09 0.82 5.58 -2.74 -0.02 0.80 16 46 H 0.05 1.03 8.16 -2.11 -0.02 1.02 16 47 H 0.08 1.36 4.95 -2.11 -0.01 1.35 16 48 H 0.06 1.74 8.05 -2.46 -0.02 1.72 16 49 H 0.06 1.71 8.09 -2.46 -0.02 1.69 16 50 H 0.04 1.76 7.98 -2.39 -0.02 1.74 16 51 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 Total: -1.00 -70.49 362.31 0.19 -70.30 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.95 Total: 12.88 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.10 Total: 18.19 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -8.84 Total: -123.21 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.49 0.19 -70.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971777297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.330 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds