Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99928 * 2 1 4 4 H 1.07997 * 120.00420 * 210.60488 * 3 2 1 5 5 C 1.38817 * 119.99839 * 30.61053 * 3 2 1 6 6 N 1.31615 * 120.00306 * 7.25187 * 5 3 2 7 7 Si 1.86801 * 119.99968 * 187.25836 * 5 3 2 8 8 H 1.48503 * 109.47212 * 94.99282 * 7 5 3 9 9 H 1.48505 * 109.47161 * 214.99055 * 7 5 3 10 10 H 1.48504 * 109.47242 * 334.99241 * 7 5 3 11 11 C 1.46500 * 120.00369 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.88687 * 176.11735 * 11 2 1 13 13 C 1.55160 * 111.00110 * 52.19424 * 11 2 1 14 14 C 1.54323 * 102.94240 * 206.42688 * 13 11 2 15 15 N 1.47026 * 107.27033 * 22.19120 * 14 13 11 16 16 C 1.34775 * 125.64500 * 181.02038 * 15 14 13 17 17 O 1.21279 * 119.99803 * 185.28818 * 16 15 14 18 18 C 1.50697 * 120.00146 * 5.29528 * 16 15 14 19 19 H 1.09000 * 109.47187 * 351.27333 * 18 16 15 20 20 C 1.52996 * 109.47339 * 111.27539 * 18 16 15 21 21 C 1.53005 * 117.50096 * 2.40417 * 20 18 16 22 22 C 1.52999 * 60.00030 * 252.51141 * 21 20 18 23 23 N 1.46898 * 109.47008 * 231.27361 * 18 16 15 24 24 C 1.48538 * 111.00195 * 286.10307 * 23 18 16 25 25 C 1.54939 * 103.22591 * 159.71640 * 24 23 18 26 26 C 1.54590 * 102.92604 * 322.58593 * 25 24 23 27 27 C 1.47903 * 110.99934 * 43.49848 * 23 18 16 28 28 C 1.47419 * 108.70442 * 1.06254 * 15 14 13 29 29 H 1.08997 * 109.46823 * 265.20574 * 1 2 3 30 30 H 1.09002 * 109.47043 * 25.20633 * 1 2 3 31 31 H 1.08999 * 109.46748 * 145.20884 * 1 2 3 32 32 H 0.96999 * 120.00696 * 180.02562 * 6 5 3 33 33 H 1.08995 * 110.72141 * 324.79271 * 13 11 2 34 34 H 1.09003 * 110.71672 * 88.06254 * 13 11 2 35 35 H 1.09001 * 109.87842 * 262.77752 * 14 13 11 36 36 H 1.08995 * 109.88338 * 141.61153 * 14 13 11 37 37 H 1.09000 * 115.55116 * 148.11038 * 20 18 16 38 38 H 1.08999 * 117.49642 * 0.02562 * 21 20 18 39 39 H 1.09001 * 117.49850 * 145.01883 * 21 20 18 40 40 H 1.08997 * 117.49451 * 252.51116 * 22 21 20 41 41 H 1.08995 * 117.49729 * 107.48776 * 22 21 20 42 42 H 1.08996 * 110.66448 * 278.15624 * 24 23 18 43 43 H 1.08999 * 110.66545 * 41.28772 * 24 23 18 44 44 H 1.09002 * 110.72157 * 204.22630 * 25 24 23 45 45 H 1.09003 * 110.72084 * 80.94658 * 25 24 23 46 46 H 1.08997 * 110.31019 * 263.04473 * 26 25 24 47 47 H 1.09007 * 110.30880 * 140.86949 * 26 25 24 48 48 H 1.09005 * 109.91683 * 333.50970 * 27 23 18 49 49 H 1.08999 * 109.91722 * 94.79999 * 27 23 18 50 50 H 1.09000 * 110.37021 * 217.03095 * 28 15 14 51 51 H 1.09001 * 110.45932 * 94.74970 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1168 1.2512 -0.4761 5 6 1.6006 2.3043 0.6122 6 7 0.4928 2.1932 1.3141 7 14 2.4340 3.9672 0.4396 8 1 1.8157 4.7166 -0.6835 9 1 2.2685 4.7369 1.6987 10 1 3.8803 3.7701 0.1663 11 6 2.1976 -1.2687 -0.0006 12 1 3.2718 -1.0971 -0.0694 13 6 1.7067 -2.1937 -1.1455 14 6 2.0244 -3.6056 -0.6093 15 7 2.1177 -3.5058 0.8546 16 6 2.4011 -4.5210 1.6945 17 8 2.3582 -4.3457 2.8938 18 6 2.7714 -5.8739 1.1435 19 1 2.6078 -5.8845 0.0659 20 6 4.2454 -6.1587 1.4385 21 6 5.0200 -5.1124 2.2424 22 6 5.2875 -5.2787 0.7452 23 7 1.9375 -6.9049 1.7755 24 6 2.3663 -7.1517 3.1761 25 6 1.1209 -7.8146 3.8165 26 6 -0.0528 -7.0538 3.1583 27 6 0.5265 -6.4690 1.8567 28 6 1.8490 -2.1117 1.2515 29 1 -0.3633 -0.0859 1.0241 30 1 -0.3633 0.9298 -0.4377 31 1 -0.3633 -0.8440 -0.5864 32 1 0.1089 2.9747 1.7415 33 1 0.6352 -2.0740 -1.3054 34 1 2.2593 -1.9967 -2.0642 35 1 2.9732 -3.9526 -1.0185 36 1 1.2258 -4.2947 -0.8838 37 1 4.4986 -7.2065 1.5998 38 1 4.4794 -4.2214 2.5616 39 1 5.7830 -5.4719 2.9329 40 1 6.2264 -5.7475 0.4507 41 1 4.9229 -4.4968 0.0790 42 1 3.2197 -7.8291 3.2034 43 1 2.6027 -6.2129 3.6771 44 1 1.1184 -7.6678 4.8966 45 1 1.0793 -8.8756 3.5703 46 1 -0.3984 -6.2529 3.8119 47 1 -0.8699 -7.7396 2.9341 48 1 0.4750 -5.3805 1.8835 49 1 -0.0293 -6.8487 0.9994 50 1 2.4848 -1.8266 2.0897 51 1 0.7984 -1.9858 1.5131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972009756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = 36.889607 kcal Electronic energy + Delta-G solvation = -29293.152080 eV Core-core repulsion = 25615.501807 eV Total energy + Delta-G solvation = -3677.650273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98561 -38.56303 -37.20935 -36.60850 -34.83065 -32.25427 -31.57395 -29.80632 -28.93484 -28.25432 -26.44991 -26.04046 -23.75390 -22.57725 -22.34518 -21.79855 -21.16960 -20.45295 -19.34259 -18.38773 -17.23575 -17.15034 -16.88312 -16.01276 -15.63723 -15.20235 -14.63511 -14.54584 -14.31929 -14.11463 -13.61532 -13.37853 -13.22955 -12.96877 -12.66967 -12.50789 -12.39504 -12.23687 -12.09325 -11.84039 -11.55854 -11.46437 -11.33157 -11.25806 -11.12263 -10.94071 -10.86886 -10.67798 -10.53768 -10.46925 -10.40253 -10.29784 -10.27734 -9.97892 -9.87631 -9.80820 -8.61454 -8.39468 -8.23991 -6.75776 -5.84358 -3.36965 2.68288 3.16619 3.33226 3.40011 3.41416 3.66103 3.88509 4.41009 4.43691 4.58356 4.65302 4.80420 4.85848 4.90029 4.96471 4.99628 5.22095 5.24288 5.31246 5.35552 5.38045 5.45338 5.53215 5.60536 5.62781 5.64357 5.75757 5.78030 5.83902 5.86899 5.89116 5.95756 5.98472 6.02703 6.05913 6.15935 6.19295 6.26120 6.36149 6.50954 6.59691 6.72642 6.79451 6.83524 6.85498 7.26080 7.61339 7.73309 7.77395 8.30908 8.36311 9.14287 9.74058 10.26998 11.21715 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.003384 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.702871 B = 8273.068670 C = 8759.305305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.582 5.582 3 C -0.266 4.266 4 H 0.068 0.932 5 C 0.011 3.989 6 N -0.901 5.901 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.174 3.826 12 H 0.077 0.923 13 C -0.154 4.154 14 C 0.102 3.898 15 N -0.611 5.611 16 C 0.506 3.494 17 O -0.540 6.540 18 C 0.090 3.910 19 H 0.100 0.900 20 C -0.143 4.143 21 C -0.178 4.178 22 C -0.176 4.176 23 N -0.491 5.491 24 C 0.020 3.980 25 C -0.122 4.122 26 C -0.126 4.126 27 C 0.028 3.972 28 C 0.086 3.914 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.000 1.000 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -19.491 -1.741 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.302 5.302 3 C -0.396 4.396 4 H 0.085 0.915 5 C -0.188 4.188 6 N -0.544 5.544 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.194 4.194 14 C -0.021 4.021 15 N -0.345 5.345 16 C 0.293 3.707 17 O -0.418 6.418 18 C -0.022 4.022 19 H 0.118 0.882 20 C -0.161 4.161 21 C -0.215 4.215 22 C -0.214 4.214 23 N -0.215 5.215 24 C -0.107 4.107 25 C -0.160 4.160 26 C -0.164 4.164 27 C -0.100 4.100 28 C -0.039 4.039 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.439 -19.744 -1.290 20.083 hybrid contribution 0.181 1.715 0.405 1.772 sum 3.619 -18.029 -0.885 18.410 Atomic orbital electron populations 1.20795 0.82737 0.97327 0.97742 1.43765 1.01698 0.99831 1.84898 1.19191 1.03419 0.86864 1.30115 0.91474 1.25245 0.97792 0.99199 0.96606 1.70020 1.20912 1.28957 1.34534 0.86218 0.79210 0.83833 0.77134 1.21352 1.21584 1.20254 1.21493 0.96332 0.85908 0.89968 0.90503 1.23170 1.02960 0.92966 1.00261 1.22060 1.00546 0.99213 0.80322 1.48818 1.68247 1.10071 1.07391 1.21154 0.76902 0.85955 0.86663 1.90649 1.53443 1.82907 1.14830 1.21646 0.93039 0.87100 1.00439 0.88194 1.22081 0.89834 0.97745 1.06470 1.23282 1.02845 1.01390 0.93976 1.23019 0.99823 1.02495 0.96025 1.65243 1.01772 1.36270 1.18181 1.23506 0.97458 1.01582 0.88118 1.22444 0.94446 0.99536 0.99566 1.22323 0.98187 0.99760 0.96163 1.22990 0.89247 0.99175 0.98595 1.23116 1.01281 0.78741 1.00736 0.96172 0.92698 0.98220 0.93494 0.90259 0.90528 0.91811 0.92088 0.86331 0.87597 0.88790 0.88449 0.88677 0.90557 0.89813 0.91201 0.91235 0.91392 0.91256 0.92968 0.90362 0.91228 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 8.03 59.85 0.48 4.22 16 2 N -0.58 -13.94 2.94 -171.03 -0.50 -14.44 16 3 C -0.27 -7.07 9.54 -15.06 -0.14 -7.21 16 4 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 5 C 0.01 0.31 5.14 -17.43 -0.09 0.22 16 6 N -0.90 -25.74 10.95 55.49 0.61 -25.14 16 7 Si 0.91 21.34 29.56 -169.99 -5.02 16.32 16 8 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 C 0.17 3.39 3.55 -65.78 -0.23 3.15 16 12 H 0.08 1.52 7.96 -51.93 -0.41 1.11 16 13 C -0.15 -2.35 6.50 -24.90 -0.16 -2.52 16 14 C 0.10 1.33 5.82 -3.06 -0.02 1.32 16 15 N -0.61 -9.70 3.33 -170.52 -0.57 -10.26 16 16 C 0.51 7.92 2.96 -10.99 -0.03 7.89 16 17 O -0.54 -10.14 12.81 5.56 0.07 -10.07 16 18 C 0.09 1.14 2.78 -68.87 -0.19 0.95 16 19 H 0.10 1.17 6.65 -51.93 -0.35 0.83 16 20 C -0.14 -1.61 4.64 -90.62 -0.42 -2.04 16 21 C -0.18 -2.21 9.46 -26.73 -0.25 -2.47 16 22 C -0.18 -1.88 10.13 -26.73 -0.27 -2.15 16 23 N -0.49 -6.11 5.43 -223.88 -1.21 -7.32 16 24 C 0.02 0.25 5.16 -1.89 -0.01 0.24 16 25 C -0.12 -1.29 7.06 -24.87 -0.18 -1.46 16 26 C -0.13 -1.42 6.93 -25.37 -0.18 -1.60 16 27 C 0.03 0.35 6.33 -2.75 -0.02 0.33 16 28 C 0.09 1.66 6.49 -2.53 -0.02 1.65 16 29 H 0.02 0.51 7.54 -51.93 -0.39 0.12 16 30 H 0.05 1.41 7.05 -51.93 -0.37 1.04 16 31 H 0.00 -0.01 5.94 -51.93 -0.31 -0.32 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.27 5.93 -51.93 -0.31 0.96 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.71 7.63 -51.93 -0.40 0.32 16 36 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.12 1.22 7.45 -51.93 -0.39 0.83 16 38 H 0.11 1.67 5.64 -51.93 -0.29 1.38 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.07 7.77 -51.93 -0.40 0.67 16 42 H 0.08 0.82 7.42 -51.93 -0.39 0.44 16 43 H 0.08 1.24 5.59 -51.93 -0.29 0.95 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 48 H 0.05 0.80 5.57 -51.93 -0.29 0.51 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 51 H 0.07 1.40 7.15 -51.93 -0.37 1.03 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -29.54 379.65 -11.36 -40.89 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.72 Total: 3.79 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.73 Total: 0.52 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -1.68 Total: -57.17 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.54 -11.36 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972009756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.783 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds