Wall clock time and date at job start Fri Apr 10 2020 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99928 * 2 1 4 4 H 1.07997 * 120.00420 * 210.60488 * 3 2 1 5 5 C 1.38817 * 119.99839 * 30.61053 * 3 2 1 6 6 N 1.31615 * 120.00306 * 7.25187 * 5 3 2 7 7 Si 1.86801 * 119.99968 * 187.25836 * 5 3 2 8 8 H 1.48503 * 109.47212 * 94.99282 * 7 5 3 9 9 H 1.48505 * 109.47161 * 214.99055 * 7 5 3 10 10 H 1.48504 * 109.47242 * 334.99241 * 7 5 3 11 11 C 1.46500 * 120.00369 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.88687 * 176.11735 * 11 2 1 13 13 C 1.55160 * 111.00110 * 52.19424 * 11 2 1 14 14 C 1.54323 * 102.94240 * 206.42688 * 13 11 2 15 15 N 1.47026 * 107.27033 * 22.19120 * 14 13 11 16 16 C 1.34775 * 125.64500 * 181.02038 * 15 14 13 17 17 O 1.21279 * 119.99803 * 185.28818 * 16 15 14 18 18 C 1.50697 * 120.00146 * 5.29528 * 16 15 14 19 19 H 1.09000 * 109.47187 * 351.27333 * 18 16 15 20 20 C 1.52996 * 109.47339 * 111.27539 * 18 16 15 21 21 C 1.53005 * 117.50096 * 2.40417 * 20 18 16 22 22 C 1.52999 * 60.00030 * 252.51141 * 21 20 18 23 23 N 1.46898 * 109.47008 * 231.27361 * 18 16 15 24 24 C 1.48538 * 111.00195 * 286.10307 * 23 18 16 25 25 C 1.54939 * 103.22591 * 159.71640 * 24 23 18 26 26 C 1.54590 * 102.92604 * 322.58593 * 25 24 23 27 27 C 1.47903 * 110.99934 * 43.49848 * 23 18 16 28 28 C 1.47419 * 108.70442 * 1.06254 * 15 14 13 29 29 H 1.08997 * 109.46823 * 265.20574 * 1 2 3 30 30 H 1.09002 * 109.47043 * 25.20633 * 1 2 3 31 31 H 1.08999 * 109.46748 * 145.20884 * 1 2 3 32 32 H 0.96999 * 120.00696 * 180.02562 * 6 5 3 33 33 H 1.08995 * 110.72141 * 324.79271 * 13 11 2 34 34 H 1.09003 * 110.71672 * 88.06254 * 13 11 2 35 35 H 1.09001 * 109.87842 * 262.77752 * 14 13 11 36 36 H 1.08995 * 109.88338 * 141.61153 * 14 13 11 37 37 H 1.09000 * 115.55116 * 148.11038 * 20 18 16 38 38 H 1.08999 * 117.49642 * 0.02562 * 21 20 18 39 39 H 1.09001 * 117.49850 * 145.01883 * 21 20 18 40 40 H 1.08997 * 117.49451 * 252.51116 * 22 21 20 41 41 H 1.08995 * 117.49729 * 107.48776 * 22 21 20 42 42 H 1.08996 * 110.66448 * 278.15624 * 24 23 18 43 43 H 1.08999 * 110.66545 * 41.28772 * 24 23 18 44 44 H 1.09002 * 110.72157 * 204.22630 * 25 24 23 45 45 H 1.09003 * 110.72084 * 80.94658 * 25 24 23 46 46 H 1.08997 * 110.31019 * 263.04473 * 26 25 24 47 47 H 1.09007 * 110.30880 * 140.86949 * 26 25 24 48 48 H 1.09005 * 109.91683 * 333.50970 * 27 23 18 49 49 H 1.08999 * 109.91722 * 94.79999 * 27 23 18 50 50 H 1.09000 * 110.37021 * 217.03095 * 28 15 14 51 51 H 1.09001 * 110.45932 * 94.74970 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1168 1.2512 -0.4761 5 6 1.6006 2.3043 0.6122 6 7 0.4928 2.1932 1.3141 7 14 2.4340 3.9672 0.4396 8 1 1.8157 4.7166 -0.6835 9 1 2.2685 4.7369 1.6987 10 1 3.8803 3.7701 0.1663 11 6 2.1976 -1.2687 -0.0006 12 1 3.2718 -1.0971 -0.0694 13 6 1.7067 -2.1937 -1.1455 14 6 2.0244 -3.6056 -0.6093 15 7 2.1177 -3.5058 0.8546 16 6 2.4011 -4.5210 1.6945 17 8 2.3582 -4.3457 2.8938 18 6 2.7714 -5.8739 1.1435 19 1 2.6078 -5.8845 0.0659 20 6 4.2454 -6.1587 1.4385 21 6 5.0200 -5.1124 2.2424 22 6 5.2875 -5.2787 0.7452 23 7 1.9375 -6.9049 1.7755 24 6 2.3663 -7.1517 3.1761 25 6 1.1209 -7.8146 3.8165 26 6 -0.0528 -7.0538 3.1583 27 6 0.5265 -6.4690 1.8567 28 6 1.8490 -2.1117 1.2515 29 1 -0.3633 -0.0859 1.0241 30 1 -0.3633 0.9298 -0.4377 31 1 -0.3633 -0.8440 -0.5864 32 1 0.1089 2.9747 1.7415 33 1 0.6352 -2.0740 -1.3054 34 1 2.2593 -1.9967 -2.0642 35 1 2.9732 -3.9526 -1.0185 36 1 1.2258 -4.2947 -0.8838 37 1 4.4986 -7.2065 1.5998 38 1 4.4794 -4.2214 2.5616 39 1 5.7830 -5.4719 2.9329 40 1 6.2264 -5.7475 0.4507 41 1 4.9229 -4.4968 0.0790 42 1 3.2197 -7.8291 3.2034 43 1 2.6027 -6.2129 3.6771 44 1 1.1184 -7.6678 4.8966 45 1 1.0793 -8.8756 3.5703 46 1 -0.3984 -6.2529 3.8119 47 1 -0.8699 -7.7396 2.9341 48 1 0.4750 -5.3805 1.8835 49 1 -0.0293 -6.8487 0.9994 50 1 2.4848 -1.8266 2.0897 51 1 0.7984 -1.9858 1.5131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972009756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:20 Heat of formation + Delta-G solvation = 18.453999 kcal Electronic energy + Delta-G solvation = -29293.951508 eV Core-core repulsion = 25615.501807 eV Total energy + Delta-G solvation = -3678.449701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = -0.60 seconds Orbital eigenvalues (eV) -42.13566 -39.85683 -38.39338 -37.68108 -36.57041 -33.64394 -32.98934 -31.30694 -29.93987 -29.65627 -28.08629 -27.53239 -25.29771 -24.01662 -23.33700 -22.76015 -22.25748 -21.40386 -20.96495 -19.57435 -18.99072 -18.34232 -18.12710 -17.40039 -16.92992 -16.53571 -16.01116 -15.65568 -15.50209 -15.27797 -15.13205 -14.89091 -14.51344 -14.34913 -14.25304 -13.81852 -13.62962 -13.55586 -13.28888 -13.17306 -12.82029 -12.79174 -12.60846 -12.44381 -12.41061 -12.28435 -12.24822 -12.16345 -12.04137 -12.02006 -11.85447 -11.66268 -11.42266 -11.29640 -11.27378 -10.88767 -10.65712 -9.72493 -9.37868 -8.73492 -7.90679 -5.45847 1.44610 1.45939 1.47345 1.55401 1.89731 2.47237 2.72913 2.90166 3.25050 3.46068 3.49836 3.55532 3.71827 3.86544 3.90359 3.93906 4.01691 4.02185 4.09365 4.15919 4.28837 4.38037 4.39396 4.41618 4.47744 4.61056 4.63099 4.70965 4.75177 4.76939 4.83476 4.89089 4.96344 4.99198 5.00419 5.03377 5.12323 5.13506 5.16449 5.19234 5.22162 5.27069 5.29561 5.40254 5.60698 5.63751 5.73552 5.83268 6.32077 6.52477 7.06774 7.10900 7.78192 8.26269 9.13822 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.003384 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.702871 B = 8273.068670 C = 8759.305305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.598 5.598 3 C -0.272 4.272 4 H 0.073 0.927 5 C -0.045 4.045 6 N -0.936 5.936 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.297 1.297 10 H -0.265 1.265 11 C 0.168 3.832 12 H 0.073 0.927 13 C -0.138 4.138 14 C 0.104 3.896 15 N -0.612 5.612 16 C 0.506 3.494 17 O -0.578 6.578 18 C 0.096 3.904 19 H 0.120 0.880 20 C -0.136 4.136 21 C -0.197 4.197 22 C -0.158 4.158 23 N -0.482 5.482 24 C 0.018 3.982 25 C -0.117 4.117 26 C -0.128 4.128 27 C 0.026 3.974 28 C 0.101 3.899 29 H -0.013 1.013 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.020 0.980 49 H 0.097 0.903 50 H 0.034 0.966 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -22.391 -4.089 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.402 4.402 4 H 0.091 0.909 5 C -0.241 4.241 6 N -0.581 5.581 7 Si 0.798 3.202 8 H -0.209 1.209 9 H -0.224 1.224 10 H -0.190 1.190 11 C 0.059 3.941 12 H 0.092 0.908 13 C -0.178 4.178 14 C -0.018 4.018 15 N -0.346 5.346 16 C 0.296 3.704 17 O -0.458 6.458 18 C -0.017 4.017 19 H 0.138 0.862 20 C -0.154 4.154 21 C -0.234 4.234 22 C -0.195 4.195 23 N -0.205 5.205 24 C -0.109 4.109 25 C -0.155 4.155 26 C -0.166 4.166 27 C -0.102 4.102 28 C -0.025 4.025 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.156 0.844 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.038 0.962 49 H 0.115 0.885 50 H 0.053 0.947 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.809 -22.690 -3.677 23.484 hybrid contribution -0.227 2.559 1.189 2.831 sum 4.581 -20.131 -2.488 20.795 Atomic orbital electron populations 1.20500 0.82967 0.97281 0.96112 1.43947 1.01871 1.00854 1.85255 1.19561 1.03475 0.88006 1.29207 0.90936 1.26016 0.98566 1.02680 0.96826 1.70194 1.22505 1.29402 1.36021 0.85210 0.78795 0.79617 0.76565 1.20880 1.22428 1.18972 1.21619 0.95868 0.84892 0.91717 0.90835 1.23033 1.02695 0.92787 0.99240 1.22268 1.03204 0.98294 0.78063 1.48860 1.68384 1.08428 1.08941 1.21869 0.75673 0.86813 0.86093 1.90641 1.54787 1.83600 1.16817 1.21772 0.94011 0.84670 1.01212 0.86217 1.22145 0.88915 0.98409 1.05952 1.23151 1.03723 1.00685 0.95887 1.23115 1.00534 1.01782 0.94106 1.65340 1.01584 1.35409 1.18144 1.23505 0.98907 1.00564 0.87900 1.22465 0.93099 1.00354 0.99611 1.22350 0.99217 0.99683 0.95322 1.23041 0.89834 0.97288 1.00050 1.22610 0.98693 0.81569 0.99663 0.99426 0.95300 0.94734 0.94139 0.90813 0.88227 0.88636 0.89549 0.84410 0.91615 0.87652 0.85809 0.89122 0.88765 0.93047 0.90971 0.89165 0.93355 0.89005 0.96173 0.88467 0.94745 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.59 8.03 127.77 1.03 9.61 16 2 N -0.60 -29.29 2.94 -695.01 -2.04 -31.33 16 3 C -0.27 -14.70 9.54 84.03 0.80 -13.90 16 4 H 0.07 3.76 7.84 -2.91 -0.02 3.74 16 5 C -0.04 -2.50 5.14 84.86 0.44 -2.06 16 6 N -0.94 -55.72 10.95 21.65 0.24 -55.49 16 7 Si 0.97 44.67 29.56 68.60 2.03 46.69 16 8 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 9 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 C 0.17 6.59 3.55 46.39 0.16 6.75 16 12 H 0.07 2.91 7.96 -2.39 -0.02 2.90 16 13 C -0.14 -3.91 6.50 31.78 0.21 -3.71 16 14 C 0.10 2.40 5.82 86.73 0.51 2.90 16 15 N -0.61 -19.28 3.33 -811.80 -2.70 -21.98 16 16 C 0.51 15.88 2.96 87.66 0.26 16.14 16 17 O -0.58 -22.90 12.81 -3.02 -0.04 -22.94 16 18 C 0.10 2.20 2.78 44.17 0.12 2.33 16 19 H 0.12 2.31 6.65 -2.39 -0.02 2.29 16 20 C -0.14 -2.72 4.64 -10.79 -0.05 -2.77 16 21 C -0.20 -4.76 9.46 30.60 0.29 -4.47 16 22 C -0.16 -2.89 10.13 30.60 0.31 -2.58 16 23 N -0.48 -10.88 5.43 -862.22 -4.68 -15.56 16 24 C 0.02 0.42 5.16 86.65 0.45 0.87 16 25 C -0.12 -2.27 7.06 31.80 0.22 -2.04 16 26 C -0.13 -2.73 6.93 31.47 0.22 -2.51 16 27 C 0.03 0.61 6.33 86.45 0.55 1.16 16 28 C 0.10 4.09 6.49 86.86 0.56 4.66 16 29 H -0.01 -0.69 7.54 -2.39 -0.02 -0.71 16 30 H 0.03 1.52 7.05 -2.39 -0.02 1.50 16 31 H 0.03 1.41 5.94 -2.39 -0.01 1.40 16 32 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.07 2.19 5.93 -2.39 -0.01 2.18 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.10 1.69 7.63 -2.39 -0.02 1.67 16 36 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 37 H 0.14 2.29 7.45 -2.39 -0.02 2.27 16 38 H 0.07 2.16 5.64 -2.39 -0.01 2.15 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.76 7.77 -2.39 -0.02 1.74 16 42 H 0.09 1.79 7.42 -2.39 -0.02 1.77 16 43 H 0.05 1.55 5.59 -2.39 -0.01 1.54 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 48 H 0.02 0.61 5.57 -2.38 -0.01 0.60 16 49 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.03 1.60 8.09 -2.39 -0.02 1.58 16 51 H 0.04 1.76 7.15 -2.39 -0.02 1.75 16 Total: -1.00 -68.84 379.65 -0.22 -69.06 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.91 Total: 21.17 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 6.07 Total: 10.38 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -9.18 Total: -124.36 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.84 -0.22 -69.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972009756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.510 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.60 seconds