Wall clock time and date at job start Fri Apr 10 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00063 * 2 1 4 4 H 1.08000 * 120.00115 * 206.96403 * 3 2 1 5 5 C 1.38810 * 119.99993 * 26.96237 * 3 2 1 6 6 N 1.31615 * 120.00093 * 8.36875 * 5 3 2 7 7 Si 1.86798 * 120.00003 * 188.36790 * 5 3 2 8 8 H 1.48499 * 109.47268 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47120 * 120.00022 * 7 5 3 10 10 H 1.48501 * 109.47516 * 239.99976 * 7 5 3 11 11 C 1.46499 * 119.99848 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.88463 * 183.88528 * 11 2 1 13 13 C 1.55154 * 111.00358 * 307.80377 * 11 2 1 14 14 C 1.54342 * 103.02182 * 153.38430 * 13 11 2 15 15 N 1.47022 * 107.25929 * 338.13787 * 14 13 11 16 16 C 1.34781 * 125.64414 * 178.84717 * 15 14 13 17 17 O 1.21286 * 119.99788 * 174.47111 * 16 15 14 18 18 C 1.50696 * 119.99929 * 354.47122 * 16 15 14 19 19 H 1.08994 * 109.47508 * 2.10909 * 18 16 15 20 20 C 1.53002 * 109.47215 * 122.10904 * 18 16 15 21 21 C 1.52999 * 117.52173 * 227.20951 * 20 18 16 22 22 C 1.52994 * 60.00103 * 107.47633 * 21 20 18 23 23 N 1.46901 * 109.47094 * 242.10377 * 18 16 15 24 24 C 1.48532 * 111.00070 * 287.63985 * 23 18 16 25 25 C 1.54944 * 103.22428 * 159.72023 * 24 23 18 26 26 C 1.54591 * 102.92155 * 322.58824 * 25 24 23 27 27 C 1.47904 * 110.99656 * 45.03839 * 23 18 16 28 28 C 1.47426 * 108.70643 * 358.58958 * 15 14 13 29 29 H 1.09000 * 109.47002 * 274.39919 * 1 2 3 30 30 H 1.09000 * 109.47320 * 34.39826 * 1 2 3 31 31 H 1.08998 * 109.47552 * 154.40212 * 1 2 3 32 32 H 0.97004 * 120.00132 * 180.02562 * 6 5 3 33 33 H 1.09002 * 110.72283 * 271.93538 * 13 11 2 34 34 H 1.08995 * 110.72226 * 35.03527 * 13 11 2 35 35 H 1.08994 * 109.99190 * 218.66354 * 14 13 11 36 36 H 1.08999 * 109.77637 * 97.49122 * 14 13 11 37 37 H 1.09000 * 115.55313 * 81.50247 * 20 18 16 38 38 H 1.08995 * 117.50236 * 214.97293 * 21 20 18 39 39 H 1.09004 * 117.49281 * 359.97438 * 21 20 18 40 40 H 1.09008 * 117.49914 * 252.50588 * 22 21 20 41 41 H 1.09003 * 117.49679 * 107.49422 * 22 21 20 42 42 H 1.09002 * 110.66706 * 278.14975 * 24 23 18 43 43 H 1.09000 * 110.66984 * 41.28666 * 24 23 18 44 44 H 1.08996 * 110.72373 * 204.22380 * 25 24 23 45 45 H 1.09006 * 110.71968 * 80.94621 * 25 24 23 46 46 H 1.09004 * 110.30904 * 263.03885 * 26 25 24 47 47 H 1.09007 * 110.31087 * 140.87345 * 26 25 24 48 48 H 1.08996 * 109.91507 * 333.50818 * 27 23 18 49 49 H 1.08997 * 109.91542 * 94.60561 * 27 23 18 50 50 H 1.08997 * 110.36248 * 143.19508 * 28 15 14 51 51 H 1.08997 * 110.36209 * 265.40687 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1416 1.2368 -0.4241 5 6 1.5688 2.3227 0.5451 6 7 0.4350 2.2296 1.2070 7 14 2.3963 3.9847 0.3391 8 1 3.6498 3.8205 -0.4399 9 1 1.4827 4.9065 -0.3827 10 1 2.7138 4.5487 1.6757 11 6 2.1974 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0695 13 6 1.7066 -2.1937 1.1454 14 6 2.0189 -3.6068 0.6089 15 7 2.1175 -3.5058 -0.8545 16 6 2.4010 -4.5210 -1.6945 17 8 2.3584 -4.3455 -2.8939 18 6 2.7708 -5.8740 -1.1436 19 1 2.7195 -5.8495 -0.0551 20 6 1.7955 -6.9256 -1.6764 21 6 1.1968 -7.9094 -0.6691 22 6 0.3273 -6.8004 -1.2646 23 7 4.1366 -6.2165 -1.5620 24 6 4.1824 -6.5495 -3.0088 25 6 5.6771 -6.3583 -3.3694 26 6 6.0819 -5.1284 -2.5247 27 6 5.0495 -5.0665 -1.3838 28 6 1.8489 -2.1116 -1.2514 29 1 -0.3633 0.0788 1.0246 30 1 -0.3634 0.8479 -0.5806 31 1 -0.3634 -0.9268 -0.4440 32 1 0.0289 3.0241 1.5875 33 1 2.2591 -1.9968 2.0641 34 1 0.6357 -2.0717 1.3075 35 1 1.2173 -4.2939 0.8799 36 1 2.9653 -3.9569 1.0210 37 1 2.0070 -7.2980 -2.6787 38 1 1.0146 -8.9290 -1.0087 39 1 1.4981 -7.8078 0.3735 40 1 0.0562 -5.9690 -0.6137 41 1 -0.4271 -7.0903 -1.9960 42 1 3.8755 -7.5820 -3.1758 43 1 3.5578 -5.8639 -3.5814 44 1 5.7938 -6.1511 -4.4331 45 1 6.2588 -7.2335 -3.0797 46 1 6.0332 -4.2222 -3.1285 47 1 7.0854 -5.2609 -2.1202 48 1 4.4879 -4.1342 -1.4412 49 1 5.5527 -5.1379 -0.4195 50 1 2.4847 -1.8267 -2.0897 51 1 0.7982 -1.9877 -1.5138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972009757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:25 Heat of formation + Delta-G solvation = 33.802453 kcal Electronic energy + Delta-G solvation = -29067.426443 eV Core-core repulsion = 25389.642301 eV Total energy + Delta-G solvation = -3677.784142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.84662 -38.59725 -37.17250 -36.92200 -34.84251 -32.28972 -31.54615 -29.83335 -29.00079 -28.27289 -26.49656 -26.05469 -23.72870 -22.56663 -22.36001 -22.11423 -21.11839 -20.30421 -19.35108 -18.53958 -17.37995 -17.10924 -16.82325 -16.00775 -15.80473 -15.33731 -14.62176 -14.55192 -14.30783 -13.96692 -13.59862 -13.52123 -13.37905 -12.90420 -12.70462 -12.67009 -12.52063 -12.24200 -11.92357 -11.80449 -11.69229 -11.51023 -11.40885 -11.22392 -11.07832 -10.95653 -10.82532 -10.75997 -10.58426 -10.53144 -10.50209 -10.43136 -10.26781 -9.97763 -9.94523 -9.84998 -8.64163 -8.38438 -8.31823 -6.80097 -5.80599 -3.32399 2.64200 3.09677 3.33228 3.41043 3.42858 3.58218 3.93121 4.35242 4.42281 4.52032 4.59594 4.74422 4.79966 4.90986 4.94172 4.97770 5.07492 5.23235 5.26003 5.30017 5.36048 5.47168 5.49148 5.50897 5.55794 5.60729 5.70411 5.73498 5.74970 5.83569 5.87493 5.89659 5.94943 5.96559 5.99618 6.03696 6.11776 6.25199 6.34599 6.49782 6.59215 6.67963 6.74077 6.78165 6.83892 7.30151 7.66692 7.73520 7.74540 8.27396 8.34101 9.15343 9.76086 10.26496 11.23540 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.003386 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.386450 B = 8266.785143 C = 9271.307920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.068 0.932 5 C 0.008 3.992 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.175 3.825 12 H 0.077 0.923 13 C -0.150 4.150 14 C 0.101 3.899 15 N -0.611 5.611 16 C 0.507 3.493 17 O -0.543 6.543 18 C 0.093 3.907 19 H 0.098 0.902 20 C -0.142 4.142 21 C -0.166 4.166 22 C -0.176 4.176 23 N -0.488 5.488 24 C 0.016 3.984 25 C -0.122 4.122 26 C -0.128 4.128 27 C 0.025 3.975 28 C 0.084 3.916 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.000 1.000 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -19.849 -2.909 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.086 0.914 5 C -0.191 4.191 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.064 3.936 12 H 0.095 0.905 13 C -0.190 4.190 14 C -0.023 4.023 15 N -0.345 5.345 16 C 0.294 3.706 17 O -0.420 6.420 18 C -0.019 4.019 19 H 0.116 0.884 20 C -0.160 4.160 21 C -0.203 4.203 22 C -0.214 4.214 23 N -0.212 5.212 24 C -0.111 4.111 25 C -0.160 4.160 26 C -0.166 4.166 27 C -0.103 4.103 28 C -0.040 4.040 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.087 0.913 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.174 -20.067 -3.187 20.967 hybrid contribution -0.038 1.719 -0.331 1.751 sum 5.135 -18.348 -3.517 19.375 Atomic orbital electron populations 1.20811 0.82528 0.95596 0.99507 1.43774 1.01804 0.99818 1.85089 1.19239 1.00815 0.86175 1.32936 0.91387 1.25134 0.97644 0.98873 0.97409 1.70044 1.19068 1.27993 1.37711 0.86162 0.78881 0.83970 0.77386 1.20218 1.21539 1.21564 1.21409 0.96344 0.85904 0.89955 0.90482 1.23202 1.02906 0.92409 1.00463 1.22092 1.00497 0.99545 0.80129 1.48727 1.68418 1.09830 1.07530 1.21163 0.77029 0.85924 0.86530 1.90629 1.52837 1.83586 1.14954 1.21648 0.89583 0.89859 1.00841 0.88366 1.22117 0.93825 0.99851 1.00230 1.22992 1.03426 0.95247 0.98588 1.22972 0.93168 1.01371 1.03882 1.65232 1.04184 1.33070 1.18728 1.23569 0.97128 1.01917 0.88524 1.22450 0.95897 0.98063 0.99563 1.22343 0.98836 0.98777 0.96619 1.23021 0.94816 0.92623 0.99794 1.23016 1.01208 0.79450 1.00372 0.94783 0.93952 0.98187 0.93660 0.90434 0.90475 0.92117 0.91886 0.86743 0.88579 0.88507 0.88760 0.88464 0.90238 0.90093 0.91130 0.91052 0.91388 0.91048 0.92905 0.90036 0.91340 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.55 59.85 0.45 4.25 16 2 N -0.58 -14.07 2.95 -171.04 -0.50 -14.57 16 3 C -0.26 -6.99 9.58 -15.06 -0.14 -7.14 16 4 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 5 C 0.01 0.23 5.18 -17.43 -0.09 0.14 16 6 N -0.90 -25.57 10.71 55.49 0.59 -24.98 16 7 Si 0.91 21.39 29.56 -169.99 -5.03 16.37 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.17 3.42 3.54 -65.79 -0.23 3.18 16 12 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 13 C -0.15 -2.44 6.50 -24.89 -0.16 -2.60 16 14 C 0.10 1.35 5.88 -3.05 -0.02 1.33 16 15 N -0.61 -9.57 3.21 -170.52 -0.55 -10.12 16 16 C 0.51 7.89 4.10 -10.99 -0.05 7.84 16 17 O -0.54 -10.18 14.80 5.55 0.08 -10.10 16 18 C 0.09 1.16 2.60 -68.86 -0.18 0.98 16 19 H 0.10 1.14 6.35 -51.93 -0.33 0.81 16 20 C -0.14 -1.58 4.72 -90.62 -0.43 -2.01 16 21 C -0.17 -1.48 10.18 -26.73 -0.27 -1.75 16 22 C -0.18 -1.84 9.98 -26.73 -0.27 -2.11 16 23 N -0.49 -5.94 5.41 -223.88 -1.21 -7.15 16 24 C 0.02 0.18 4.89 -1.89 -0.01 0.18 16 25 C -0.12 -1.23 7.06 -24.87 -0.18 -1.41 16 26 C -0.13 -1.39 6.93 -25.38 -0.18 -1.56 16 27 C 0.03 0.31 6.45 -2.75 -0.02 0.29 16 28 C 0.08 1.55 6.44 -2.53 -0.02 1.53 16 29 H 0.03 0.87 7.31 -51.93 -0.38 0.49 16 30 H 0.04 1.09 7.44 -51.93 -0.39 0.71 16 31 H 0.00 -0.01 6.39 -51.93 -0.33 -0.34 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 37 H 0.11 1.31 6.19 -51.93 -0.32 0.99 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.83 7.29 -51.93 -0.38 0.45 16 43 H 0.08 1.16 5.56 -51.93 -0.29 0.88 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.77 5.72 -51.93 -0.30 0.48 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 51 H 0.07 1.32 6.42 -51.93 -0.33 0.99 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -29.80 384.81 -11.44 -41.24 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.85 Total: 2.36 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.78 Total: 1.15 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.67 Total: -56.82 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.80 -11.44 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972009757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.047 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds