Wall clock time and date at job start Fri Apr 10 2020 18:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00063 * 2 1 4 4 H 1.08000 * 120.00115 * 206.96403 * 3 2 1 5 5 C 1.38810 * 119.99993 * 26.96237 * 3 2 1 6 6 N 1.31615 * 120.00093 * 8.36875 * 5 3 2 7 7 Si 1.86798 * 120.00003 * 188.36790 * 5 3 2 8 8 H 1.48499 * 109.47268 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47120 * 120.00022 * 7 5 3 10 10 H 1.48501 * 109.47516 * 239.99976 * 7 5 3 11 11 C 1.46499 * 119.99848 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.88463 * 183.88528 * 11 2 1 13 13 C 1.55154 * 111.00358 * 307.80377 * 11 2 1 14 14 C 1.54342 * 103.02182 * 153.38430 * 13 11 2 15 15 N 1.47022 * 107.25929 * 338.13787 * 14 13 11 16 16 C 1.34781 * 125.64414 * 178.84717 * 15 14 13 17 17 O 1.21286 * 119.99788 * 174.47111 * 16 15 14 18 18 C 1.50696 * 119.99929 * 354.47122 * 16 15 14 19 19 H 1.08994 * 109.47508 * 2.10909 * 18 16 15 20 20 C 1.53002 * 109.47215 * 122.10904 * 18 16 15 21 21 C 1.52999 * 117.52173 * 227.20951 * 20 18 16 22 22 C 1.52994 * 60.00103 * 107.47633 * 21 20 18 23 23 N 1.46901 * 109.47094 * 242.10377 * 18 16 15 24 24 C 1.48532 * 111.00070 * 287.63985 * 23 18 16 25 25 C 1.54944 * 103.22428 * 159.72023 * 24 23 18 26 26 C 1.54591 * 102.92155 * 322.58824 * 25 24 23 27 27 C 1.47904 * 110.99656 * 45.03839 * 23 18 16 28 28 C 1.47426 * 108.70643 * 358.58958 * 15 14 13 29 29 H 1.09000 * 109.47002 * 274.39919 * 1 2 3 30 30 H 1.09000 * 109.47320 * 34.39826 * 1 2 3 31 31 H 1.08998 * 109.47552 * 154.40212 * 1 2 3 32 32 H 0.97004 * 120.00132 * 180.02562 * 6 5 3 33 33 H 1.09002 * 110.72283 * 271.93538 * 13 11 2 34 34 H 1.08995 * 110.72226 * 35.03527 * 13 11 2 35 35 H 1.08994 * 109.99190 * 218.66354 * 14 13 11 36 36 H 1.08999 * 109.77637 * 97.49122 * 14 13 11 37 37 H 1.09000 * 115.55313 * 81.50247 * 20 18 16 38 38 H 1.08995 * 117.50236 * 214.97293 * 21 20 18 39 39 H 1.09004 * 117.49281 * 359.97438 * 21 20 18 40 40 H 1.09008 * 117.49914 * 252.50588 * 22 21 20 41 41 H 1.09003 * 117.49679 * 107.49422 * 22 21 20 42 42 H 1.09002 * 110.66706 * 278.14975 * 24 23 18 43 43 H 1.09000 * 110.66984 * 41.28666 * 24 23 18 44 44 H 1.08996 * 110.72373 * 204.22380 * 25 24 23 45 45 H 1.09006 * 110.71968 * 80.94621 * 25 24 23 46 46 H 1.09004 * 110.30904 * 263.03885 * 26 25 24 47 47 H 1.09007 * 110.31087 * 140.87345 * 26 25 24 48 48 H 1.08996 * 109.91507 * 333.50818 * 27 23 18 49 49 H 1.08997 * 109.91542 * 94.60561 * 27 23 18 50 50 H 1.08997 * 110.36248 * 143.19508 * 28 15 14 51 51 H 1.08997 * 110.36209 * 265.40687 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1416 1.2368 -0.4241 5 6 1.5688 2.3227 0.5451 6 7 0.4350 2.2296 1.2070 7 14 2.3963 3.9847 0.3391 8 1 3.6498 3.8205 -0.4399 9 1 1.4827 4.9065 -0.3827 10 1 2.7138 4.5487 1.6757 11 6 2.1974 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0695 13 6 1.7066 -2.1937 1.1454 14 6 2.0189 -3.6068 0.6089 15 7 2.1175 -3.5058 -0.8545 16 6 2.4010 -4.5210 -1.6945 17 8 2.3584 -4.3455 -2.8939 18 6 2.7708 -5.8740 -1.1436 19 1 2.7195 -5.8495 -0.0551 20 6 1.7955 -6.9256 -1.6764 21 6 1.1968 -7.9094 -0.6691 22 6 0.3273 -6.8004 -1.2646 23 7 4.1366 -6.2165 -1.5620 24 6 4.1824 -6.5495 -3.0088 25 6 5.6771 -6.3583 -3.3694 26 6 6.0819 -5.1284 -2.5247 27 6 5.0495 -5.0665 -1.3838 28 6 1.8489 -2.1116 -1.2514 29 1 -0.3633 0.0788 1.0246 30 1 -0.3634 0.8479 -0.5806 31 1 -0.3634 -0.9268 -0.4440 32 1 0.0289 3.0241 1.5875 33 1 2.2591 -1.9968 2.0641 34 1 0.6357 -2.0717 1.3075 35 1 1.2173 -4.2939 0.8799 36 1 2.9653 -3.9569 1.0210 37 1 2.0070 -7.2980 -2.6787 38 1 1.0146 -8.9290 -1.0087 39 1 1.4981 -7.8078 0.3735 40 1 0.0562 -5.9690 -0.6137 41 1 -0.4271 -7.0903 -1.9960 42 1 3.8755 -7.5820 -3.1758 43 1 3.5578 -5.8639 -3.5814 44 1 5.7938 -6.1511 -4.4331 45 1 6.2588 -7.2335 -3.0797 46 1 6.0332 -4.2222 -3.1285 47 1 7.0854 -5.2609 -2.1202 48 1 4.4879 -4.1342 -1.4412 49 1 5.5527 -5.1379 -0.4195 50 1 2.4847 -1.8267 -2.0897 51 1 0.7982 -1.9877 -1.5138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972009757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:24 Heat of formation + Delta-G solvation = 15.856233 kcal Electronic energy + Delta-G solvation = -29068.204649 eV Core-core repulsion = 25389.642301 eV Total energy + Delta-G solvation = -3678.562348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.97443 -39.85798 -38.40275 -37.84251 -36.58575 -33.63459 -32.96070 -31.34008 -29.95696 -29.66889 -28.09754 -27.55818 -25.26402 -23.93640 -23.28270 -22.99983 -22.14788 -21.24772 -20.95406 -19.67245 -19.00086 -18.47358 -17.99184 -17.36202 -16.99776 -16.55231 -16.17548 -15.64267 -15.43051 -15.11829 -15.08598 -14.85782 -14.58624 -14.43542 -14.19789 -14.03814 -13.69877 -13.53399 -13.21983 -13.00078 -12.84429 -12.74456 -12.56639 -12.45295 -12.40327 -12.32503 -12.19727 -12.13086 -12.10090 -11.96424 -11.85067 -11.74375 -11.48598 -11.42587 -11.21946 -10.94934 -10.68896 -9.71499 -9.39724 -8.77390 -7.86727 -5.40612 1.44272 1.44983 1.46742 1.56415 1.86178 2.48082 2.68270 3.05618 3.25872 3.44824 3.49778 3.51250 3.70834 3.87962 3.91093 3.96382 3.97696 4.05444 4.11413 4.14889 4.21980 4.26547 4.38388 4.39976 4.47642 4.60365 4.62532 4.71126 4.72133 4.79093 4.84858 4.88003 4.94388 4.95633 5.00610 5.02956 5.12170 5.15189 5.18204 5.19447 5.25349 5.25685 5.27141 5.38294 5.61816 5.67880 5.72769 5.81201 6.30485 6.49397 7.04045 7.11611 7.79661 8.25548 9.15750 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.003386 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.386450 B = 8266.785143 C = 9271.307920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.272 4.272 4 H 0.067 0.933 5 C -0.042 4.042 6 N -0.932 5.932 7 Si 0.968 3.032 8 H -0.269 1.269 9 H -0.292 1.292 10 H -0.287 1.287 11 C 0.169 3.831 12 H 0.072 0.928 13 C -0.139 4.139 14 C 0.107 3.893 15 N -0.612 5.612 16 C 0.506 3.494 17 O -0.580 6.580 18 C 0.102 3.898 19 H 0.114 0.886 20 C -0.160 4.160 21 C -0.138 4.138 22 C -0.186 4.186 23 N -0.481 5.481 24 C 0.015 3.985 25 C -0.117 4.117 26 C -0.129 4.129 27 C 0.022 3.978 28 C 0.098 3.902 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.024 0.976 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.025 0.975 49 H 0.097 0.903 50 H 0.046 0.954 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.399 -22.376 -1.947 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.322 5.322 3 C -0.402 4.402 4 H 0.085 0.915 5 C -0.238 4.238 6 N -0.578 5.578 7 Si 0.796 3.204 8 H -0.193 1.193 9 H -0.219 1.219 10 H -0.214 1.214 11 C 0.060 3.940 12 H 0.090 0.910 13 C -0.178 4.178 14 C -0.015 4.015 15 N -0.345 5.345 16 C 0.295 3.705 17 O -0.460 6.460 18 C -0.010 4.010 19 H 0.132 0.868 20 C -0.179 4.179 21 C -0.175 4.175 22 C -0.224 4.224 23 N -0.204 5.204 24 C -0.112 4.112 25 C -0.155 4.155 26 C -0.167 4.167 27 C -0.106 4.106 28 C -0.027 4.027 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.110 0.890 48 H 0.043 0.957 49 H 0.116 0.884 50 H 0.065 0.935 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.460 -22.641 -2.215 23.649 hybrid contribution -0.413 2.457 -0.703 2.589 sum 6.047 -20.184 -2.919 21.272 Atomic orbital electron populations 1.20492 0.82737 0.95428 0.97870 1.43920 1.01950 1.00820 1.85545 1.19513 1.00807 0.87536 1.32316 0.91549 1.25830 0.98367 1.01968 0.97641 1.70187 1.20297 1.28463 1.38821 0.85200 0.78087 0.79932 0.77176 1.19319 1.21886 1.21414 1.21498 0.95700 0.84920 0.91855 0.90999 1.23028 1.02147 0.93258 0.99398 1.22193 1.02921 0.98044 0.78321 1.48787 1.68481 1.08553 1.08712 1.21908 0.75795 0.86797 0.85972 1.90617 1.54292 1.84290 1.16791 1.21710 0.90020 0.87873 1.01439 0.86800 1.22112 0.94014 1.00861 1.00888 1.23096 1.00552 0.95315 0.98545 1.23008 0.92847 1.02252 1.04276 1.65312 1.03850 1.32479 1.18792 1.23560 0.97772 1.01921 0.87980 1.22471 0.94870 0.98343 0.99803 1.22368 0.99587 0.98511 0.96218 1.23084 0.94946 0.91381 1.01152 1.22589 0.99642 0.81423 0.99070 0.96730 0.96975 0.95734 0.94077 0.89612 0.91519 0.89404 0.89224 0.87408 0.86894 0.87212 0.89450 0.88256 0.88746 0.93123 0.90684 0.89225 0.92981 0.89020 0.95689 0.88449 0.93495 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 7.55 127.77 0.96 9.71 16 2 N -0.60 -29.51 2.95 -695.04 -2.05 -31.56 16 3 C -0.27 -14.75 9.58 84.03 0.81 -13.94 16 4 H 0.07 3.55 7.84 -2.91 -0.02 3.52 16 5 C -0.04 -2.32 5.18 84.86 0.44 -1.88 16 6 N -0.93 -53.88 10.71 21.65 0.23 -53.65 16 7 Si 0.97 44.54 29.56 68.60 2.03 46.57 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.17 6.66 3.54 46.38 0.16 6.82 16 12 H 0.07 2.88 7.96 -2.38 -0.02 2.86 16 13 C -0.14 -4.34 6.50 31.79 0.21 -4.13 16 14 C 0.11 2.60 5.88 86.74 0.51 3.11 16 15 N -0.61 -18.69 3.21 -811.78 -2.60 -21.29 16 16 C 0.51 15.49 4.10 87.66 0.36 15.85 16 17 O -0.58 -22.27 14.80 -3.05 -0.05 -22.32 16 18 C 0.10 2.32 2.60 44.17 0.11 2.44 16 19 H 0.11 2.22 6.35 -2.39 -0.02 2.21 16 20 C -0.16 -3.24 4.72 -10.79 -0.05 -3.29 16 21 C -0.14 -1.98 10.18 30.59 0.31 -1.67 16 22 C -0.19 -3.50 9.98 30.59 0.31 -3.20 16 23 N -0.48 -10.69 5.41 -862.23 -4.67 -15.35 16 24 C 0.01 0.33 4.89 86.65 0.42 0.75 16 25 C -0.12 -2.15 7.06 31.80 0.22 -1.93 16 26 C -0.13 -2.62 6.93 31.47 0.22 -2.40 16 27 C 0.02 0.51 6.45 86.45 0.56 1.07 16 28 C 0.10 3.70 6.44 86.85 0.56 4.26 16 29 H 0.01 0.76 7.31 -2.39 -0.02 0.74 16 30 H 0.01 0.62 7.44 -2.39 -0.02 0.61 16 31 H 0.02 1.04 6.39 -2.39 -0.02 1.03 16 32 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.25 7.01 -2.39 -0.02 2.24 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.77 7.87 -2.39 -0.02 1.75 16 37 H 0.11 2.33 6.19 -2.39 -0.01 2.31 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.11 1.33 8.08 -2.38 -0.02 1.31 16 40 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 1.78 7.29 -2.39 -0.02 1.77 16 43 H 0.05 1.47 5.56 -2.39 -0.01 1.46 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.02 0.72 5.72 -2.39 -0.01 0.70 16 49 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.05 1.94 8.09 -2.39 -0.02 1.92 16 51 H 0.05 2.09 6.42 -2.39 -0.02 2.07 16 Total: -1.00 -66.32 384.81 -0.10 -66.42 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.90 Total: 19.61 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 6.11 Total: 11.58 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -9.09 Total: -121.86 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.32 -0.10 -66.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972009757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.276 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds