Wall clock time and date at job start Fri Apr 10 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.91635 * 2 1 4 4 C 1.54905 * 111.00447 * 236.10206 * 2 1 3 5 5 N 1.47421 * 104.83401 * 204.91505 * 4 2 1 6 6 C 1.36946 * 125.65193 * 204.09238 * 5 4 2 7 7 H 1.07999 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99907 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00347 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47639 * 89.99321 * 10 8 6 12 12 H 1.48504 * 109.47051 * 209.99441 * 10 8 6 13 13 H 1.48504 * 109.47238 * 329.99189 * 10 8 6 14 14 C 1.47023 * 108.70342 * 24.12581 * 5 4 2 15 15 C 1.54323 * 107.26929 * 358.94342 * 14 5 4 16 16 H 1.09001 * 110.72215 * 219.26286 * 15 14 5 17 17 N 1.46505 * 110.72093 * 96.16728 * 15 14 5 18 18 C 1.34776 * 120.00032 * 86.45537 * 17 15 14 19 19 O 1.21279 * 119.99660 * 359.97438 * 18 17 15 20 20 C 1.50694 * 120.00084 * 180.02562 * 18 17 15 21 21 H 1.09004 * 109.68414 * 300.33003 * 20 18 17 22 22 C 1.53144 * 109.58188 * 60.65377 * 20 18 17 23 23 N 1.46908 * 109.36641 * 119.78909 * 22 20 18 24 24 C 1.46940 * 111.05930 * 298.01142 * 23 22 20 25 25 C 1.53131 * 109.35046 * 61.96871 * 24 23 22 26 26 C 1.53387 * 109.58070 * 179.97438 * 20 18 17 27 27 C 1.53394 * 108.60138 * 181.24063 * 26 20 18 28 28 C 1.46949 * 111.05449 * 62.01432 * 23 22 20 29 29 H 1.08996 * 109.47168 * 296.09584 * 1 2 3 30 30 H 1.09003 * 109.47096 * 56.09265 * 1 2 3 31 31 H 1.08996 * 109.47316 * 176.09389 * 1 2 3 32 32 H 1.08996 * 109.47221 * 183.90126 * 3 2 1 33 33 H 1.08995 * 109.47428 * 303.90884 * 3 2 1 34 34 H 1.09004 * 109.46833 * 63.90445 * 3 2 1 35 35 H 1.09003 * 110.37020 * 86.07954 * 4 2 1 36 36 H 1.08998 * 110.46200 * 323.80204 * 4 2 1 37 37 H 0.96999 * 120.00247 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.88645 * 239.52295 * 14 5 4 39 39 H 1.09003 * 110.00631 * 118.42663 * 14 5 4 40 40 H 0.97000 * 120.00199 * 266.45077 * 17 15 14 41 41 H 1.08997 * 109.49090 * 239.75971 * 22 20 18 42 42 H 1.09002 * 109.48082 * 359.82735 * 22 20 18 43 43 H 1.08990 * 109.49255 * 302.00075 * 24 23 22 44 44 H 1.09007 * 109.48735 * 181.92658 * 24 23 22 45 45 H 1.09000 * 109.56883 * 240.24048 * 25 24 23 46 46 H 1.08994 * 109.57764 * 119.86335 * 25 24 23 47 47 H 1.08997 * 110.11073 * 59.80414 * 26 20 18 48 48 H 1.08999 * 109.57132 * 178.81330 * 27 26 20 49 49 H 1.08997 * 109.57116 * 299.19336 * 27 26 20 50 50 H 1.08995 * 109.49127 * 58.00263 * 28 23 22 51 51 H 1.08999 * 109.49075 * 178.05464 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8065 -1.2003 5 7 3.4271 -1.2430 -0.7734 6 6 4.4641 -1.5666 -1.6073 7 1 4.3333 -1.5115 -2.6780 8 6 5.6831 -1.9653 -1.0765 9 7 5.8425 -2.0319 0.2283 10 14 7.0977 -2.4060 -2.2140 11 1 7.9012 -1.1901 -2.4988 12 1 7.9578 -3.4261 -1.5620 13 1 6.5589 -2.9523 -3.4854 14 6 3.4675 -1.2741 0.6959 15 6 2.0862 -0.8079 1.2022 16 1 2.1920 -0.1726 2.0815 17 7 1.2268 -1.9575 1.4961 18 6 1.2807 -2.5470 2.7069 19 8 2.0409 -2.1261 3.5529 20 6 0.3972 -3.7298 3.0090 21 1 -0.6490 -3.4441 2.8994 22 6 0.7210 -4.8726 2.0423 23 7 1.1673 -6.0453 2.8062 24 6 2.3967 -5.7509 3.5552 25 6 2.1206 -4.6331 4.5646 26 6 0.6521 -4.2087 4.4437 27 6 -0.2345 -5.4303 4.7166 28 6 0.1071 -6.5256 3.7034 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5733 -0.8529 31 1 -0.3634 -1.0252 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6704 1.9733 -0.8528 34 1 1.7836 1.9299 0.9230 35 1 2.1560 -0.1718 -2.0837 36 1 1.4525 -1.6702 -1.4044 37 1 6.6945 -2.3102 0.5993 38 1 4.2426 -0.5998 1.0599 39 1 3.6662 -2.2884 1.0421 40 1 0.6190 -2.2943 0.8193 41 1 -0.1709 -5.1289 1.4705 42 1 1.5125 -4.5594 1.3614 43 1 3.1763 -5.4320 2.8635 44 1 2.7234 -6.6462 4.0843 45 1 2.7659 -3.7809 4.3513 46 1 2.3140 -4.9963 5.5739 47 1 0.4346 -3.4078 5.1504 48 1 -0.0503 -5.7969 5.7265 49 1 -1.2830 -5.1510 4.6131 50 1 -0.7800 -6.7708 3.1195 51 1 0.4524 -7.4147 4.2311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974589921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:30 Heat of formation + Delta-G solvation = -5.010914 kcal Electronic energy + Delta-G solvation = -29876.264799 eV Core-core repulsion = 26196.797584 eV Total energy + Delta-G solvation = -3679.467216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.15605 -39.27708 -37.59370 -33.89925 -33.10547 -32.15240 -31.22606 -30.82901 -30.66643 -27.99649 -26.78974 -25.61890 -24.19261 -23.18574 -22.87686 -22.79606 -20.55711 -19.77088 -18.77130 -17.41879 -17.09321 -16.67004 -16.45472 -16.25784 -15.50933 -15.09633 -14.69538 -14.22325 -13.89500 -13.86623 -13.28537 -13.21142 -13.00781 -12.78633 -12.55971 -12.31625 -12.16108 -12.10316 -12.05691 -11.94578 -11.76008 -11.65819 -11.45469 -11.34801 -11.06110 -10.96797 -10.95357 -10.76629 -10.40956 -10.24327 -10.20516 -10.16434 -9.97119 -9.86270 -9.62595 -9.16699 -8.60829 -8.40875 -8.16207 -6.80258 -5.66748 -3.01552 3.03590 3.41940 3.46874 3.49245 3.56969 4.00866 4.51166 4.52031 4.67159 4.87133 4.94580 5.04283 5.13011 5.19575 5.23616 5.27730 5.30699 5.34483 5.43123 5.46350 5.55519 5.59547 5.65134 5.79415 5.81248 5.83855 5.91410 5.95099 5.97690 6.03133 6.16139 6.18925 6.19962 6.22397 6.25211 6.28455 6.39942 6.55228 6.59686 6.62461 6.68708 6.80720 6.98236 7.09629 7.12271 7.58027 7.67359 7.85313 7.99168 8.28192 8.68615 9.24563 9.85292 10.50625 11.43670 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.004768 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.351538 B = 5871.037276 C = 7283.799021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.178 3.822 15 C 0.125 3.875 16 H 0.084 0.916 17 N -0.710 5.710 18 C 0.518 3.482 19 O -0.536 6.536 20 C -0.139 4.139 21 H 0.093 0.907 22 C 0.060 3.940 23 N -0.527 5.527 24 C 0.051 3.949 25 C -0.160 4.160 26 C -0.064 4.064 27 C -0.149 4.149 28 C 0.052 3.948 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.394 0.606 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.475 -3.407 6.267 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.328 5.328 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.202 4.202 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.052 3.948 15 C 0.020 3.980 16 H 0.102 0.898 17 N -0.360 5.360 18 C 0.304 3.696 19 O -0.413 6.413 20 C -0.162 4.162 21 H 0.111 0.889 22 C -0.069 4.069 23 N -0.246 5.246 24 C -0.077 4.077 25 C -0.199 4.199 26 C -0.083 4.083 27 C -0.188 4.188 28 C -0.077 4.077 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.229 0.771 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.559 -3.590 6.528 16.354 hybrid contribution 0.299 0.252 -0.294 0.489 sum -14.260 -3.339 6.235 15.917 Atomic orbital electron populations 1.21671 0.94822 1.01016 1.01303 1.22002 0.94359 0.96047 0.96705 1.21593 1.02516 0.93761 1.00447 1.21615 0.87839 0.94486 0.94254 1.44431 1.07597 1.78960 1.01848 1.19011 0.89422 1.38513 0.88874 0.90551 1.24790 0.97778 1.01743 0.95916 1.69963 1.24125 1.53247 1.09124 0.86167 0.82503 0.77794 0.79563 1.21670 1.21732 1.20764 1.21481 0.89625 1.00394 0.83261 1.22449 0.92490 0.86293 0.96781 0.89758 1.46041 1.42655 1.33012 1.14338 1.20339 0.83363 0.83772 0.82114 1.90625 1.39710 1.64187 1.46786 1.22089 1.00176 0.95550 0.98380 0.88898 1.22260 1.01882 0.87633 0.95095 1.62490 1.04645 1.31504 1.25995 1.22242 0.92154 0.97574 0.95776 1.22469 0.96855 1.01111 0.99455 1.20858 0.95947 0.96939 0.94604 1.22282 0.99584 0.96616 1.00355 1.22205 0.94866 0.96973 0.93654 0.92925 0.92662 0.93087 0.91206 0.92919 0.93417 0.94210 0.96746 0.93741 0.93095 0.93420 0.77136 0.90091 0.89418 0.90217 0.91012 0.88225 0.92337 0.90098 0.91503 0.91833 0.90817 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.22 37.16 0.31 -1.33 16 2 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.99 8.57 37.16 0.32 -1.67 16 4 C 0.14 2.82 6.14 -2.53 -0.02 2.80 16 5 N -0.60 -14.85 3.38 -170.08 -0.57 -15.43 16 6 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 9 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.18 4.32 4.79 -3.06 -0.01 4.30 16 15 C 0.12 2.34 2.51 -66.09 -0.17 2.17 16 16 H 0.08 1.66 7.60 -51.93 -0.39 1.27 16 17 N -0.71 -11.40 4.34 -52.03 -0.23 -11.63 16 18 C 0.52 8.56 6.59 -10.99 -0.07 8.49 16 19 O -0.54 -10.83 13.44 5.56 0.07 -10.76 16 20 C -0.14 -1.77 2.60 -91.50 -0.24 -2.01 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 22 C 0.06 0.78 5.62 -3.75 -0.02 0.76 16 23 N -0.53 -6.86 5.22 -234.32 -1.22 -8.08 16 24 C 0.05 0.72 6.09 -3.73 -0.02 0.69 16 25 C -0.16 -2.30 5.43 -26.49 -0.14 -2.44 16 26 C -0.06 -0.81 2.60 -90.04 -0.23 -1.04 16 27 C -0.15 -1.49 5.75 -26.49 -0.15 -1.64 16 28 C 0.05 0.53 6.09 -3.76 -0.02 0.51 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.59 6.38 -51.93 -0.33 0.26 16 32 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.01 0.28 7.99 -51.93 -0.41 -0.13 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.05 1.42 7.38 -51.93 -0.38 1.03 16 39 H 0.05 1.33 7.41 -51.93 -0.38 0.95 16 40 H 0.39 5.48 6.82 -40.82 -0.28 5.20 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.37 7.47 -51.93 -0.39 0.99 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.79 5.56 -51.93 -0.29 1.50 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -31.25 377.83 -10.72 -41.97 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -9.16 Total: 6.39 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.86 Total: 1.27 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -1.45 Total: -61.80 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.25 -10.72 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974589921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.961 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds