Wall clock time and date at job start Fri Apr 10 2020 18:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.64497 * 2 1 4 4 C 1.54331 * 110.71905 * 236.66204 * 2 1 3 5 5 N 1.47024 * 107.27011 * 219.44689 * 4 2 1 6 6 C 1.36935 * 125.64661 * 178.98409 * 5 4 2 7 7 H 1.08008 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00270 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99646 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00444 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47099 * 89.99895 * 10 8 6 12 12 H 1.48493 * 109.47217 * 210.00308 * 10 8 6 13 13 H 1.48502 * 109.46855 * 329.99957 * 10 8 6 14 14 C 1.47418 * 108.70330 * 358.94023 * 5 4 2 15 15 C 1.54908 * 104.83494 * 24.13193 * 14 5 4 16 16 H 1.09003 * 111.03938 * 204.90610 * 15 14 5 17 17 N 1.46499 * 111.00663 * 81.06187 * 15 14 5 18 18 C 1.34777 * 119.99665 * 93.08437 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 H 1.09001 * 109.58394 * 59.99806 * 20 18 17 22 22 C 1.53148 * 109.58042 * 299.73059 * 20 18 17 23 23 N 1.46903 * 109.37223 * 240.21716 * 22 20 18 24 24 C 1.46949 * 111.05220 * 297.98979 * 23 22 20 25 25 C 1.53406 * 109.38606 * 61.89289 * 24 23 22 26 26 C 1.53384 * 109.57616 * 180.26332 * 20 18 17 27 27 C 1.53667 * 108.45781 * 60.95670 * 26 20 18 28 28 C 1.46937 * 111.06603 * 61.98601 * 23 22 20 29 29 H 1.09000 * 109.46777 * 296.86018 * 1 2 3 30 30 H 1.09005 * 109.46870 * 56.85835 * 1 2 3 31 31 H 1.08994 * 109.47748 * 176.85591 * 1 2 3 32 32 H 1.08997 * 109.47136 * 183.14609 * 3 2 1 33 33 H 1.09007 * 109.46899 * 303.13993 * 3 2 1 34 34 H 1.08991 * 109.47359 * 63.14242 * 3 2 1 35 35 H 1.09001 * 109.88027 * 338.86646 * 4 2 1 36 36 H 1.08999 * 109.88222 * 100.02866 * 4 2 1 37 37 H 0.97001 * 119.99936 * 180.02562 * 9 8 6 38 38 H 1.09000 * 110.37044 * 265.28953 * 14 5 4 39 39 H 1.09006 * 110.36755 * 142.96761 * 14 5 4 40 40 H 0.97001 * 119.99790 * 272.80150 * 17 15 14 41 41 H 1.09005 * 109.48308 * 0.18276 * 22 20 18 42 42 H 1.08996 * 109.48889 * 120.21853 * 22 20 18 43 43 H 1.08996 * 109.49496 * 181.92162 * 24 23 22 44 44 H 1.09004 * 109.49012 * 301.99631 * 24 23 22 45 45 H 1.08998 * 109.53281 * 240.34598 * 25 24 23 46 46 H 1.08999 * 109.64529 * 119.93787 * 25 24 23 47 47 H 1.09007 * 110.10956 * 300.18715 * 26 20 18 48 48 H 1.08995 * 109.54062 * 299.08755 * 27 26 20 49 49 H 1.08998 * 109.65160 * 178.80736 * 27 26 20 50 50 H 1.09003 * 109.48877 * 58.00039 * 28 23 22 51 51 H 1.08993 * 109.49669 * 178.07862 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2444 -1.5521 -0.7364 6 6 4.0043 -2.3995 -1.4977 7 1 3.7616 -2.5545 -2.5387 8 6 5.0870 -3.0586 -0.9319 9 7 5.3830 -2.8694 0.3365 10 14 6.1240 -4.2141 -1.9707 11 1 7.2332 -3.4533 -2.5999 12 1 6.6849 -5.2856 -1.1090 13 1 5.2780 -4.8221 -3.0290 14 6 3.4632 -1.2487 0.6896 15 6 2.0789 -0.7935 1.2151 16 1 2.1843 -0.1485 2.0875 17 7 1.2270 -1.9463 1.5177 18 6 1.1982 -2.4536 2.7660 19 8 1.8813 -1.9589 3.6376 20 6 0.3172 -3.6356 3.0788 21 1 0.6088 -4.4829 2.4582 22 6 -1.1447 -3.2741 2.7998 23 7 -1.9231 -3.4012 4.0392 24 6 -1.9068 -4.7850 4.5332 25 6 -0.4643 -5.1921 4.8601 26 6 0.4638 -4.0083 4.5594 27 6 0.0176 -2.8086 5.4096 28 6 -1.4360 -2.4704 5.0665 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8605 31 1 -0.3634 -1.0260 -0.0564 32 1 3.1577 1.4100 -0.0564 33 1 1.6717 1.9698 -0.8606 34 1 1.7631 1.9354 0.9167 35 1 1.3128 -1.4785 -1.5751 36 1 2.3741 -0.1059 -1.9976 37 1 6.1399 -3.3297 0.7318 38 1 4.1931 -0.4467 0.7992 39 1 3.7959 -2.1407 1.2205 40 1 0.6806 -2.3418 0.8206 41 1 -1.2026 -2.2477 2.4376 42 1 -1.5486 -3.9492 2.0454 43 1 -2.5185 -4.8574 5.4325 44 1 -2.3061 -5.4495 3.7669 45 1 -0.1784 -6.0457 4.2456 46 1 -0.3884 -5.4570 5.9147 47 1 1.5001 -4.2640 4.7807 48 1 0.6535 -1.9506 5.1915 49 1 0.0940 -3.0603 6.4674 50 1 -1.4923 -1.4495 4.6884 51 1 -2.0516 -2.5616 5.9613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974589924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:33 Heat of formation + Delta-G solvation = -5.964859 kcal Electronic energy + Delta-G solvation = -29804.723310 eV Core-core repulsion = 26125.214728 eV Total energy + Delta-G solvation = -3679.508582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.15522 -39.24529 -37.57523 -33.85565 -33.14695 -32.17509 -31.23421 -30.90292 -30.68660 -28.04411 -26.78717 -25.61813 -24.19001 -23.19175 -22.93417 -22.84604 -20.55434 -19.75999 -18.72488 -17.43354 -17.10533 -16.70519 -16.41845 -16.35473 -15.60114 -15.15050 -14.61702 -14.16466 -13.83610 -13.78121 -13.42334 -13.18322 -13.07949 -12.87735 -12.61341 -12.31643 -12.20300 -12.19658 -12.15240 -11.94090 -11.86080 -11.65652 -11.46367 -11.28129 -11.17892 -11.03619 -10.92753 -10.78876 -10.40677 -10.36924 -10.19398 -10.17140 -9.93047 -9.79504 -9.68163 -9.17486 -8.68387 -8.37902 -8.19249 -6.81606 -5.63850 -3.06889 3.11833 3.38686 3.43573 3.45910 3.63659 3.90544 4.47907 4.51216 4.67814 4.88025 4.99327 5.02262 5.13076 5.13867 5.18731 5.22680 5.26070 5.30441 5.43017 5.43627 5.51944 5.62230 5.63184 5.70973 5.77591 5.81730 5.88933 5.89534 5.94900 6.04078 6.07245 6.10955 6.16555 6.21244 6.25694 6.28108 6.40967 6.48693 6.49320 6.62137 6.70819 6.79583 6.96519 6.98326 7.03437 7.50294 7.62095 7.87791 8.07567 8.38479 8.76333 9.21489 9.83138 10.47416 11.38638 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.004420 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.968611 B = 6333.046718 C = 7509.328956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.147 3.853 15 C 0.124 3.876 16 H 0.086 0.914 17 N -0.700 5.700 18 C 0.522 3.478 19 O -0.542 6.542 20 C -0.141 4.141 21 H 0.098 0.902 22 C 0.063 3.937 23 N -0.528 5.528 24 C 0.052 3.948 25 C -0.150 4.150 26 C -0.064 4.064 27 C -0.160 4.160 28 C 0.052 3.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.023 0.977 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.112 0.888 40 H 0.396 0.604 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 0.449 6.907 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.104 0.896 17 N -0.349 5.349 18 C 0.307 3.693 19 O -0.420 6.420 20 C -0.164 4.164 21 H 0.116 0.884 22 C -0.067 4.067 23 N -0.248 5.248 24 C -0.076 4.076 25 C -0.190 4.190 26 C -0.084 4.084 27 C -0.199 4.199 28 C -0.076 4.076 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.129 0.871 40 H 0.230 0.770 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.611 0.804 7.422 17.304 hybrid contribution 1.407 -1.073 -0.840 1.959 sum -14.204 -0.269 6.582 15.658 Atomic orbital electron populations 1.21705 0.94617 1.01195 1.01180 1.21850 0.94841 0.95686 0.96533 1.21681 1.01878 0.94189 1.00822 1.21403 0.90260 0.92928 0.93673 1.44462 1.30630 1.50184 1.07423 1.19033 1.06421 1.16944 0.92889 0.90596 1.24783 0.98748 1.00619 0.96321 1.69814 1.29847 1.46121 1.10793 0.86120 0.80363 0.80353 0.78930 1.21654 1.21744 1.20763 1.22292 0.89303 1.01209 0.85088 1.22497 0.93225 0.86286 0.96124 0.89579 1.45781 1.45675 1.33073 1.10384 1.20262 0.82289 0.84270 0.82431 1.90602 1.43484 1.61525 1.46379 1.22079 0.97178 0.98082 0.99031 0.88424 1.22226 0.88973 1.02753 0.92708 1.62543 1.51902 1.05611 1.04721 1.22259 0.95422 0.89414 1.00546 1.22340 0.96511 0.98176 1.01932 1.20915 0.99971 0.94902 0.92580 1.22512 0.97858 1.00330 0.99153 1.22212 0.94214 0.96374 0.94783 0.92919 0.92817 0.92929 0.91830 0.92756 0.93115 0.96097 0.95938 0.93742 0.96354 0.87072 0.76990 0.90119 0.89933 0.90768 0.90698 0.91580 0.91473 0.89725 0.88514 0.92295 0.90944 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.07 37.16 0.30 -1.38 16 2 C -0.09 -1.44 0.80 -152.67 -0.12 -1.56 16 3 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 4 C 0.14 2.84 6.42 -3.06 -0.02 2.82 16 5 N -0.60 -14.83 3.39 -170.07 -0.58 -15.41 16 6 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 7 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.04 10.09 55.49 0.56 -26.48 16 10 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.15 3.57 5.28 -2.53 -0.01 3.55 16 15 C 0.12 2.35 2.67 -65.78 -0.18 2.18 16 16 H 0.09 1.69 7.43 -51.93 -0.39 1.30 16 17 N -0.70 -11.86 4.30 -51.73 -0.22 -12.08 16 18 C 0.52 8.97 6.59 -10.99 -0.07 8.89 16 19 O -0.54 -11.10 13.37 5.55 0.07 -11.03 16 20 C -0.14 -1.91 2.59 -91.50 -0.24 -2.15 16 21 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 22 C 0.06 0.71 5.61 -3.75 -0.02 0.69 16 23 N -0.53 -5.83 5.22 -234.11 -1.22 -7.05 16 24 C 0.05 0.50 6.10 -3.59 -0.02 0.48 16 25 C -0.15 -1.56 5.77 -26.32 -0.15 -1.71 16 26 C -0.06 -0.84 2.62 -89.87 -0.24 -1.08 16 27 C -0.16 -2.06 5.43 -26.31 -0.14 -2.20 16 28 C 0.05 0.59 6.09 -3.73 -0.02 0.57 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 32 H 0.06 1.09 7.59 -51.93 -0.39 0.70 16 33 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.41 7.76 -51.93 -0.40 0.00 16 36 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.02 0.49 7.81 -51.93 -0.41 0.08 16 39 H 0.11 3.16 5.87 -51.93 -0.31 2.85 16 40 H 0.40 6.12 7.09 -40.82 -0.29 5.83 16 41 H 0.08 0.95 7.46 -51.93 -0.39 0.56 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 48 H 0.10 1.52 5.58 -51.93 -0.29 1.23 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -30.85 376.47 -10.68 -41.53 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -9.07 Total: 6.94 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.87 Total: 0.84 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -1.46 Total: -61.02 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.85 -10.68 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974589924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.566 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds