Wall clock time and date at job start Fri Apr 10 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.64497 * 2 1 4 4 C 1.54331 * 110.71905 * 236.66204 * 2 1 3 5 5 N 1.47024 * 107.27011 * 219.44689 * 4 2 1 6 6 C 1.36935 * 125.64661 * 178.98409 * 5 4 2 7 7 H 1.08008 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00270 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99646 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00444 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47099 * 89.99895 * 10 8 6 12 12 H 1.48493 * 109.47217 * 210.00308 * 10 8 6 13 13 H 1.48502 * 109.46855 * 329.99957 * 10 8 6 14 14 C 1.47418 * 108.70330 * 358.94023 * 5 4 2 15 15 C 1.54908 * 104.83494 * 24.13193 * 14 5 4 16 16 H 1.09003 * 111.03938 * 204.90610 * 15 14 5 17 17 N 1.46499 * 111.00663 * 81.06187 * 15 14 5 18 18 C 1.34777 * 119.99665 * 93.08437 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 H 1.09001 * 109.58394 * 59.99806 * 20 18 17 22 22 C 1.53148 * 109.58042 * 299.73059 * 20 18 17 23 23 N 1.46903 * 109.37223 * 240.21716 * 22 20 18 24 24 C 1.46949 * 111.05220 * 297.98979 * 23 22 20 25 25 C 1.53406 * 109.38606 * 61.89289 * 24 23 22 26 26 C 1.53384 * 109.57616 * 180.26332 * 20 18 17 27 27 C 1.53667 * 108.45781 * 60.95670 * 26 20 18 28 28 C 1.46937 * 111.06603 * 61.98601 * 23 22 20 29 29 H 1.09000 * 109.46777 * 296.86018 * 1 2 3 30 30 H 1.09005 * 109.46870 * 56.85835 * 1 2 3 31 31 H 1.08994 * 109.47748 * 176.85591 * 1 2 3 32 32 H 1.08997 * 109.47136 * 183.14609 * 3 2 1 33 33 H 1.09007 * 109.46899 * 303.13993 * 3 2 1 34 34 H 1.08991 * 109.47359 * 63.14242 * 3 2 1 35 35 H 1.09001 * 109.88027 * 338.86646 * 4 2 1 36 36 H 1.08999 * 109.88222 * 100.02866 * 4 2 1 37 37 H 0.97001 * 119.99936 * 180.02562 * 9 8 6 38 38 H 1.09000 * 110.37044 * 265.28953 * 14 5 4 39 39 H 1.09006 * 110.36755 * 142.96761 * 14 5 4 40 40 H 0.97001 * 119.99790 * 272.80150 * 17 15 14 41 41 H 1.09005 * 109.48308 * 0.18276 * 22 20 18 42 42 H 1.08996 * 109.48889 * 120.21853 * 22 20 18 43 43 H 1.08996 * 109.49496 * 181.92162 * 24 23 22 44 44 H 1.09004 * 109.49012 * 301.99631 * 24 23 22 45 45 H 1.08998 * 109.53281 * 240.34598 * 25 24 23 46 46 H 1.08999 * 109.64529 * 119.93787 * 25 24 23 47 47 H 1.09007 * 110.10956 * 300.18715 * 26 20 18 48 48 H 1.08995 * 109.54062 * 299.08755 * 27 26 20 49 49 H 1.08998 * 109.65160 * 178.80736 * 27 26 20 50 50 H 1.09003 * 109.48877 * 58.00039 * 28 23 22 51 51 H 1.08993 * 109.49669 * 178.07862 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2444 -1.5521 -0.7364 6 6 4.0043 -2.3995 -1.4977 7 1 3.7616 -2.5545 -2.5387 8 6 5.0870 -3.0586 -0.9319 9 7 5.3830 -2.8694 0.3365 10 14 6.1240 -4.2141 -1.9707 11 1 7.2332 -3.4533 -2.5999 12 1 6.6849 -5.2856 -1.1090 13 1 5.2780 -4.8221 -3.0290 14 6 3.4632 -1.2487 0.6896 15 6 2.0789 -0.7935 1.2151 16 1 2.1843 -0.1485 2.0875 17 7 1.2270 -1.9463 1.5177 18 6 1.1982 -2.4536 2.7660 19 8 1.8813 -1.9589 3.6376 20 6 0.3172 -3.6356 3.0788 21 1 0.6088 -4.4829 2.4582 22 6 -1.1447 -3.2741 2.7998 23 7 -1.9231 -3.4012 4.0392 24 6 -1.9068 -4.7850 4.5332 25 6 -0.4643 -5.1921 4.8601 26 6 0.4638 -4.0083 4.5594 27 6 0.0176 -2.8086 5.4096 28 6 -1.4360 -2.4704 5.0665 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8605 31 1 -0.3634 -1.0260 -0.0564 32 1 3.1577 1.4100 -0.0564 33 1 1.6717 1.9698 -0.8606 34 1 1.7631 1.9354 0.9167 35 1 1.3128 -1.4785 -1.5751 36 1 2.3741 -0.1059 -1.9976 37 1 6.1399 -3.3297 0.7318 38 1 4.1931 -0.4467 0.7992 39 1 3.7959 -2.1407 1.2205 40 1 0.6806 -2.3418 0.8206 41 1 -1.2026 -2.2477 2.4376 42 1 -1.5486 -3.9492 2.0454 43 1 -2.5185 -4.8574 5.4325 44 1 -2.3061 -5.4495 3.7669 45 1 -0.1784 -6.0457 4.2456 46 1 -0.3884 -5.4570 5.9147 47 1 1.5001 -4.2640 4.7807 48 1 0.6535 -1.9506 5.1915 49 1 0.0940 -3.0603 6.4674 50 1 -1.4923 -1.4495 4.6884 51 1 -2.0516 -2.5616 5.9613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974589924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:32 Heat of formation + Delta-G solvation = -26.644026 kcal Electronic energy + Delta-G solvation = -29805.620026 eV Core-core repulsion = 26125.214728 eV Total energy + Delta-G solvation = -3680.405298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24835 -40.66963 -39.01873 -35.68651 -34.61495 -33.16413 -32.61841 -32.27233 -31.79593 -29.68089 -28.03191 -27.41336 -25.55007 -24.48921 -23.95740 -23.78654 -22.26128 -21.26929 -20.14207 -18.71878 -18.54239 -18.19060 -17.58300 -17.37141 -16.92541 -16.69706 -16.13495 -15.69453 -15.46419 -15.29700 -14.71651 -14.59787 -14.09358 -13.92507 -13.80221 -13.71939 -13.65669 -13.18899 -13.11955 -13.10534 -13.04630 -13.00657 -12.86723 -12.78372 -12.63680 -12.57880 -12.49657 -12.10498 -11.93792 -11.78804 -11.75890 -11.46709 -11.36003 -11.27896 -11.09141 -10.80762 -10.48825 -9.87342 -9.19814 -8.85462 -7.76811 -5.22001 1.43327 1.45039 1.53765 1.73102 2.28965 2.47689 3.03979 3.32844 3.50071 3.58559 3.64541 3.70991 3.86825 3.98221 4.04480 4.08191 4.13080 4.25000 4.29552 4.36744 4.42148 4.42868 4.49408 4.53070 4.65160 4.75428 4.83232 4.85124 4.88342 4.92561 4.96769 5.01952 5.06430 5.10109 5.12237 5.16372 5.20457 5.21071 5.21591 5.31065 5.33722 5.45912 5.48813 5.53975 5.73054 5.83633 6.08418 6.14935 6.29812 6.68200 7.08264 7.38379 7.78415 8.42166 9.23552 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.004420 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.968611 B = 6333.046718 C = 7509.328956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.126 4.126 4 C 0.139 3.861 5 N -0.617 5.617 6 C -0.232 4.232 7 H 0.085 0.915 8 C -0.068 4.068 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.289 1.289 12 H -0.299 1.299 13 H -0.264 1.264 14 C 0.156 3.844 15 C 0.138 3.862 16 H 0.076 0.924 17 N -0.693 5.693 18 C 0.515 3.485 19 O -0.581 6.581 20 C -0.133 4.133 21 H 0.099 0.901 22 C 0.068 3.932 23 N -0.526 5.526 24 C 0.053 3.947 25 C -0.142 4.142 26 C -0.070 4.070 27 C -0.156 4.156 28 C 0.057 3.943 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.024 0.976 37 H 0.242 0.758 38 H -0.019 1.019 39 H 0.067 0.933 40 H 0.406 0.594 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.382 -0.043 5.895 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.075 4.075 3 C -0.184 4.184 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.361 4.361 7 H 0.103 0.897 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.217 1.217 12 H -0.226 1.226 13 H -0.189 1.189 14 C 0.029 3.971 15 C 0.031 3.969 16 H 0.095 0.905 17 N -0.342 5.342 18 C 0.303 3.697 19 O -0.461 6.461 20 C -0.156 4.156 21 H 0.117 0.883 22 C -0.061 4.061 23 N -0.245 5.245 24 C -0.075 4.075 25 C -0.182 4.182 26 C -0.089 4.089 27 C -0.195 4.195 28 C -0.071 4.071 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.051 0.949 38 H -0.001 1.001 39 H 0.085 0.915 40 H 0.242 0.758 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.282 0.315 6.372 20.310 hybrid contribution 2.596 -0.877 -0.517 2.788 sum -16.687 -0.561 5.854 17.693 Atomic orbital electron populations 1.21669 0.90977 1.02413 1.02878 1.21829 0.97514 0.95259 0.92922 1.21686 0.99897 0.93875 1.02929 1.21643 0.88839 0.93063 0.95071 1.44685 1.31752 1.50378 1.07487 1.19459 1.06483 1.16627 0.93495 0.89728 1.25613 1.00379 1.02697 0.97369 1.70129 1.30041 1.47308 1.12554 0.85096 0.78726 0.78084 0.77566 1.21663 1.22596 1.18867 1.21926 0.91819 0.97998 0.85341 1.22112 0.90988 0.87016 0.96736 0.90547 1.45687 1.45134 1.32639 1.10777 1.21033 0.82059 0.84759 0.81876 1.90596 1.45119 1.62859 1.47534 1.22113 0.98178 0.96031 0.99311 0.88288 1.22265 0.86957 1.03258 0.93611 1.62587 1.51115 1.06394 1.04418 1.22378 0.94689 0.88630 1.01829 1.22301 0.96441 0.96739 1.02670 1.20916 0.99072 0.96475 0.92485 1.22425 0.98658 0.98818 0.99577 1.22196 0.92968 0.96246 0.95709 0.91747 0.90517 0.92082 0.94993 0.90177 0.91403 0.94514 0.95808 0.94868 1.00144 0.91505 0.75778 0.90277 0.87631 0.89142 0.89141 0.91130 0.90559 0.92997 0.91957 0.91515 0.91537 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 8.07 71.98 0.58 -2.13 16 2 C -0.07 -2.32 0.80 -50.99 -0.04 -2.36 16 3 C -0.13 -3.66 8.41 71.98 0.61 -3.05 16 4 C 0.14 5.32 6.42 86.73 0.56 5.88 16 5 N -0.62 -31.11 3.39 -691.97 -2.35 -33.46 16 6 C -0.23 -12.85 10.27 84.03 0.86 -11.98 16 7 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 8 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 9 N -0.95 -59.00 10.09 21.65 0.22 -58.78 16 10 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 14 C 0.16 8.00 5.28 86.86 0.46 8.46 16 15 C 0.14 5.34 2.67 46.38 0.12 5.47 16 16 H 0.08 3.12 7.43 -2.39 -0.02 3.11 16 17 N -0.69 -23.53 4.30 -435.96 -1.87 -25.41 16 18 C 0.51 18.18 6.59 87.66 0.58 18.76 16 19 O -0.58 -25.25 13.37 -3.04 -0.04 -25.29 16 20 C -0.13 -3.55 2.59 -11.36 -0.03 -3.58 16 21 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 22 C 0.07 1.38 5.61 86.35 0.48 1.86 16 23 N -0.53 -9.99 5.22 -894.58 -4.67 -14.66 16 24 C 0.05 0.83 6.10 86.43 0.53 1.35 16 25 C -0.14 -2.67 5.77 30.86 0.18 -2.49 16 26 C -0.07 -1.84 2.62 -10.31 -0.03 -1.86 16 27 C -0.16 -4.00 5.43 30.86 0.17 -3.83 16 28 C 0.06 1.18 6.09 86.34 0.53 1.70 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 1.27 6.48 -2.39 -0.02 1.26 16 32 H 0.03 1.11 7.59 -2.39 -0.02 1.09 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.32 7.76 -2.39 -0.02 1.30 16 36 H 0.02 0.92 7.85 -2.39 -0.02 0.91 16 37 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 38 H -0.02 -1.10 7.81 -2.39 -0.02 -1.12 16 39 H 0.07 4.07 5.87 -2.38 -0.01 4.05 16 40 H 0.41 12.01 7.09 -92.71 -0.66 11.36 16 41 H 0.08 1.65 7.46 -2.38 -0.02 1.63 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.05 1.68 8.11 -2.38 -0.02 1.66 16 48 H 0.06 2.06 5.58 -2.39 -0.01 2.04 16 49 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -71.99 376.47 -0.42 -72.41 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.25 Total: 28.09 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.02 Total: 8.72 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -8.67 Total: -132.31 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.99 -0.42 -72.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974589924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.767 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds