Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 N 1.46905 * 109.46967 * 120.00293 * 2 1 3 5 5 C 1.48528 * 111.00046 * 57.60277 * 4 2 1 6 6 C 1.54934 * 103.22616 * 159.72131 * 5 4 2 7 7 C 1.54596 * 102.92143 * 322.58439 * 6 5 4 8 8 C 1.47902 * 110.99673 * 175.00090 * 4 2 1 9 9 H 1.08999 * 110.08029 * 333.59722 * 8 4 2 10 10 C 1.50691 * 109.91800 * 94.80033 * 8 4 2 11 11 O 1.21284 * 120.00320 * 359.04450 * 10 8 4 12 12 N 1.34779 * 120.00110 * 179.03888 * 10 8 4 13 13 C 1.46502 * 120.00096 * 179.97438 * 12 10 8 14 14 C 1.53008 * 109.47049 * 180.02562 * 13 12 10 15 15 H 1.08995 * 115.48976 * 330.38668 * 14 13 12 16 16 C 1.52997 * 117.44132 * 185.00516 * 14 13 12 17 17 H 1.08998 * 120.26145 * 3.82939 * 16 14 13 18 18 C 1.54387 * 118.12106 * 160.81277 * 16 14 13 19 19 N 1.48141 * 104.61828 * 87.19069 * 18 16 14 20 20 C 1.36940 * 127.84124 * 140.41747 * 19 18 16 21 21 H 1.07995 * 119.99402 * 338.92966 * 20 19 18 22 22 C 1.38807 * 120.00110 * 158.92346 * 20 19 18 23 23 N 1.31619 * 120.00447 * 335.61148 * 22 20 19 24 24 Si 1.86805 * 119.99680 * 155.61428 * 22 20 19 25 25 H 1.48495 * 109.47169 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46757 * 240.00038 * 24 22 20 27 27 H 1.48496 * 109.47225 * 120.00112 * 24 22 20 28 28 C 1.48142 * 104.32381 * 320.67252 * 19 18 16 29 29 C 1.52997 * 117.44075 * 115.76355 * 14 13 12 30 30 H 1.08999 * 120.26127 * 356.17319 * 29 14 13 31 31 H 1.08995 * 109.46945 * 299.99853 * 1 2 3 32 32 H 1.08997 * 109.46944 * 60.00338 * 1 2 3 33 33 H 1.09000 * 109.46889 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46513 * 239.99813 * 2 1 3 35 35 H 1.08997 * 109.46763 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.46782 * 300.00207 * 3 2 1 37 37 H 1.09002 * 109.46774 * 59.99996 * 3 2 1 38 38 H 1.09002 * 110.66904 * 41.28634 * 5 4 2 39 39 H 1.09004 * 110.81098 * 278.21936 * 5 4 2 40 40 H 1.09002 * 110.72468 * 204.22698 * 6 5 4 41 41 H 1.09006 * 110.88119 * 81.01385 * 6 5 4 42 42 H 1.08997 * 110.31121 * 263.04150 * 7 6 5 43 43 H 1.09001 * 110.39336 * 140.91734 * 7 6 5 44 44 H 0.96999 * 120.00133 * 0.02562 * 12 10 8 45 45 H 1.09005 * 109.46670 * 60.01249 * 13 12 10 46 46 H 1.08993 * 109.47682 * 300.00774 * 13 12 10 47 47 H 1.08999 * 110.40784 * 328.40464 * 18 16 14 48 48 H 1.09000 * 110.40684 * 205.97552 * 18 16 14 49 49 H 0.96996 * 119.99488 * 354.47572 * 23 22 20 50 50 H 1.09001 * 110.40815 * 158.11026 * 28 19 18 51 51 H 1.09002 * 110.41059 * 280.54539 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4967 -2.0813 1.2630 6 6 2.4844 -2.7884 2.2248 7 6 3.8444 -2.1563 1.8497 8 6 3.4933 -0.8174 1.1749 9 1 3.8520 -0.8149 0.1457 10 6 4.1177 0.3218 1.9386 11 8 3.4145 1.1716 2.4427 12 7 5.4578 0.3961 2.0617 13 6 6.0649 1.5039 2.8037 14 6 7.5874 1.3520 2.7917 15 1 7.9562 0.3279 2.7353 16 6 8.4021 2.3506 3.6162 17 1 7.8977 3.0943 4.2332 18 6 9.8514 1.9734 3.9913 19 7 10.6664 2.4322 2.8424 20 6 11.8990 3.0282 2.8715 21 1 12.2406 3.5182 3.7713 22 6 12.7092 3.0024 1.7448 23 7 12.5561 2.0535 0.8456 24 14 14.0169 4.3145 1.5046 25 1 13.9853 5.2603 2.6490 26 1 13.7507 5.0539 0.2445 27 1 15.3539 3.6728 1.4289 28 6 9.8428 2.1057 1.6552 29 6 8.3983 2.4339 2.0756 30 1 7.8910 3.2397 1.5450 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9562 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.5197 -2.5466 0.2776 39 1 0.4858 -2.0961 1.6706 40 1 2.4957 -3.8633 2.0443 41 1 2.2338 -2.5758 3.2642 42 1 4.3822 -2.8008 1.1544 43 1 4.4427 -1.9836 2.7444 44 1 6.0204 -0.2834 1.6583 45 1 5.7064 1.4914 3.8330 46 1 5.7907 2.4488 2.3348 47 1 9.9433 0.8944 4.1157 48 1 10.1547 2.4890 4.9025 49 1 11.9334 1.3277 1.0078 50 1 10.1395 2.7211 0.8058 51 1 9.9332 1.0476 1.4091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978154828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = 22.949627 kcal Electronic energy + Delta-G solvation = -27589.770718 eV Core-core repulsion = 23911.515962 eV Total energy + Delta-G solvation = -3678.254756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.59545 -39.18412 -38.15796 -35.11339 -34.73871 -33.49178 -30.98596 -30.06492 -29.56134 -27.58914 -27.30100 -26.72948 -24.76099 -23.09683 -21.59300 -21.21346 -20.72944 -20.29827 -19.59527 -19.38606 -17.54878 -17.41635 -16.74184 -16.09408 -15.44335 -15.02359 -14.79053 -14.67667 -14.17098 -13.91893 -13.71965 -13.66830 -13.44413 -13.26011 -13.16167 -12.96838 -12.86266 -12.56470 -12.23967 -12.00489 -11.78542 -11.65636 -11.58571 -11.47895 -11.26478 -11.10196 -11.06890 -10.94308 -10.71287 -10.55844 -10.45384 -10.09427 -9.82910 -9.65372 -9.51108 -9.18707 -8.93296 -8.68262 -8.50892 -7.01646 -6.16366 -3.21922 2.65433 2.92007 3.48751 3.52308 3.65406 3.69918 4.01376 4.22343 4.24718 4.52030 4.53600 4.74360 4.75252 4.80373 4.82709 4.87324 5.06617 5.13260 5.17775 5.18632 5.27277 5.37317 5.39631 5.43739 5.44695 5.49159 5.57214 5.60518 5.63403 5.67023 5.70842 5.79078 5.82758 5.83548 5.85465 5.95787 5.98846 6.21654 6.34839 6.40793 6.50393 6.57465 6.58968 6.75595 6.77560 6.95145 6.97482 7.51886 7.72847 8.27729 8.42308 8.94729 9.75348 10.38500 11.19827 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.002228 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.189435 B =12565.112151 C =12800.102426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 C -0.139 4.139 4 N -0.488 5.488 5 C 0.036 3.964 6 C -0.122 4.122 7 C -0.125 4.125 8 C 0.048 3.952 9 H 0.077 0.923 10 C 0.519 3.481 11 O -0.516 6.516 12 N -0.729 5.729 13 C 0.158 3.842 14 C -0.143 4.143 15 H 0.103 0.897 16 C -0.162 4.162 17 H 0.107 0.893 18 C 0.153 3.847 19 N -0.598 5.598 20 C -0.330 4.330 21 H 0.065 0.935 22 C -0.027 4.027 23 N -0.920 5.920 24 Si 1.074 2.926 25 H -0.292 1.292 26 H -0.289 1.289 27 H -0.293 1.293 28 C 0.164 3.836 29 C -0.166 4.166 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.399 0.601 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.053 0.947 49 H 0.268 0.732 50 H 0.066 0.934 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.122 -9.758 -1.136 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 C -0.197 4.197 4 N -0.213 5.213 5 C -0.091 4.091 6 C -0.160 4.160 7 C -0.163 4.163 8 C -0.064 4.064 9 H 0.095 0.905 10 C 0.304 3.696 11 O -0.390 6.390 12 N -0.383 5.383 13 C 0.035 3.965 14 C -0.162 4.162 15 H 0.121 0.879 16 C -0.183 4.183 17 H 0.125 0.875 18 C 0.027 3.973 19 N -0.323 5.323 20 C -0.457 4.457 21 H 0.083 0.917 22 C -0.228 4.228 23 N -0.560 5.560 24 Si 0.904 3.096 25 H -0.218 1.218 26 H -0.216 1.216 27 H -0.220 1.220 28 C 0.038 3.962 29 C -0.186 4.186 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.233 0.767 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -22.486 -8.133 -1.353 23.950 hybrid contribution -0.566 -1.310 0.114 1.431 sum -23.052 -9.442 -1.239 24.941 Atomic orbital electron populations 1.21846 0.93979 1.01793 1.02488 1.21831 0.96021 0.95818 0.90048 1.21848 1.00751 0.94813 1.02256 1.64435 1.03448 1.14990 1.38473 1.23237 0.99582 0.87892 0.98389 1.22482 0.93782 0.99322 1.00446 1.22430 0.98581 0.94035 1.01301 1.22316 0.90584 0.94337 0.99177 0.90519 1.20290 0.81802 0.86642 0.80858 1.90689 1.61360 1.40204 1.46777 1.46034 1.06673 1.28891 1.56668 1.20798 0.90115 0.89361 0.96269 1.22519 0.91444 0.96614 1.05621 0.87911 1.23847 0.97825 1.01454 0.95143 0.87512 1.21154 0.87401 0.96313 0.92407 1.45307 1.16918 1.70282 0.99781 1.19800 0.91942 1.31441 1.02536 0.91710 1.25877 1.00290 1.01560 0.95094 1.70710 1.36607 1.09939 1.38771 0.83397 0.75371 0.75265 0.75585 1.21774 1.21607 1.22018 1.21047 0.85601 0.97568 0.91974 1.24019 0.98569 1.00279 0.95743 0.87695 0.91512 0.92163 0.92772 0.94323 0.93303 0.92812 0.90677 0.93630 0.89567 0.90644 0.90430 0.90345 0.90234 0.76654 0.91269 0.91510 0.95906 0.92889 0.92057 0.91589 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.99 37.16 0.33 -0.77 16 2 C 0.07 0.66 2.38 -67.71 -0.16 0.50 16 3 C -0.14 -1.50 7.93 37.16 0.29 -1.21 16 4 N -0.49 -4.91 4.33 -216.03 -0.94 -5.84 16 5 C 0.04 0.28 5.31 -1.90 -0.01 0.26 16 6 C -0.12 -0.85 7.06 -24.87 -0.18 -1.03 16 7 C -0.13 -0.95 6.47 -25.37 -0.16 -1.11 16 8 C 0.05 0.46 2.37 -67.80 -0.16 0.30 16 9 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 10 C 0.52 6.48 5.60 -10.99 -0.06 6.42 16 11 O -0.52 -8.32 14.51 5.55 0.08 -8.24 16 12 N -0.73 -8.32 5.42 -60.29 -0.33 -8.65 16 13 C 0.16 2.08 5.95 -4.04 -0.02 2.05 16 14 C -0.14 -2.10 5.40 -90.62 -0.49 -2.59 16 15 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 16 C -0.16 -2.82 6.85 -89.22 -0.61 -3.43 16 17 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 18 C 0.15 3.22 7.04 -2.41 -0.02 3.20 16 19 N -0.60 -15.29 3.23 -169.12 -0.55 -15.83 16 20 C -0.33 -9.36 10.19 -15.06 -0.15 -9.51 16 21 H 0.07 1.84 7.94 -52.49 -0.42 1.42 16 22 C -0.03 -0.77 5.12 -17.43 -0.09 -0.85 16 23 N -0.92 -27.76 12.82 55.49 0.71 -27.05 16 24 Si 1.07 25.47 29.98 -169.99 -5.10 20.37 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.16 3.77 4.98 -2.63 -0.01 3.76 16 29 C -0.17 -3.02 6.72 -89.43 -0.60 -3.62 16 30 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.36 6.88 -51.93 -0.36 0.00 16 34 H 0.04 0.34 7.96 -51.93 -0.41 -0.08 16 35 H 0.05 0.59 6.22 -51.93 -0.32 0.26 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.97 7.55 -51.93 -0.39 0.57 16 38 H 0.05 0.30 8.02 -51.93 -0.42 -0.11 16 39 H 0.09 0.61 7.66 -51.93 -0.40 0.21 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.65 7.62 -51.93 -0.40 0.25 16 44 H 0.40 3.75 8.37 -40.82 -0.34 3.41 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.27 8.10 6.41 -40.82 -0.26 7.83 16 50 H 0.07 1.69 7.47 -51.93 -0.39 1.30 16 51 H 0.02 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -33.03 392.94 -11.47 -44.50 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -9.18 Total: 2.44 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.10 Total: -7.62 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -1.10 Total: -57.38 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.03 -11.47 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978154828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.450 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds