Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46849 * 2 1 4 4 N 1.46891 * 109.47100 * 120.00246 * 2 1 3 5 5 C 1.47846 * 111.00240 * 46.71572 * 4 2 1 6 6 C 1.54904 * 104.79708 * 146.36587 * 5 4 2 7 7 C 1.55145 * 101.65150 * 322.92836 * 6 5 4 8 8 C 1.47442 * 110.99980 * 167.55796 * 4 2 1 9 9 H 1.09004 * 109.88892 * 117.17337 * 8 4 2 10 10 C 1.50701 * 109.89015 * 356.14794 * 8 4 2 11 11 O 1.21284 * 119.99599 * 294.60282 * 10 8 4 12 12 N 1.34771 * 120.00045 * 114.59897 * 10 8 4 13 13 C 1.46500 * 120.00202 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47375 * 180.02562 * 13 12 10 15 15 H 1.09001 * 115.49586 * 29.61974 * 14 13 12 16 16 C 1.53005 * 117.44177 * 244.23877 * 14 13 12 17 17 H 1.08998 * 119.54113 * 4.11737 * 16 14 13 18 18 C 1.54797 * 117.93558 * 160.75593 * 16 14 13 19 19 N 1.48141 * 104.41492 * 87.46803 * 18 16 14 20 20 C 1.36938 * 127.83826 * 140.37282 * 19 18 16 21 21 H 1.08005 * 120.00113 * 196.09612 * 20 19 18 22 22 C 1.38816 * 119.99818 * 16.08120 * 20 19 18 23 23 N 1.31620 * 119.99904 * 9.50272 * 22 20 19 24 24 Si 1.86802 * 119.99982 * 189.49834 * 22 20 19 25 25 H 1.48500 * 109.47256 * 84.98965 * 24 22 20 26 26 H 1.48508 * 109.47141 * 324.98883 * 24 22 20 27 27 H 1.48495 * 109.47109 * 204.99274 * 24 22 20 28 28 C 1.48148 * 104.32628 * 320.10222 * 19 18 16 29 29 C 1.53000 * 117.44277 * 175.00187 * 14 13 12 30 30 H 1.09002 * 119.54113 * 354.28055 * 29 14 13 31 31 H 1.08997 * 109.47259 * 292.87396 * 1 2 3 32 32 H 1.08994 * 109.47163 * 52.87772 * 1 2 3 33 33 H 1.09007 * 109.46976 * 172.87317 * 1 2 3 34 34 H 1.08998 * 109.47045 * 240.00119 * 2 1 3 35 35 H 1.08992 * 109.47321 * 298.64115 * 3 2 1 36 36 H 1.08998 * 109.46537 * 58.64122 * 3 2 1 37 37 H 1.08995 * 109.46699 * 178.63673 * 3 2 1 38 38 H 1.09000 * 110.37544 * 265.19164 * 5 4 2 39 39 H 1.09001 * 110.37293 * 27.42165 * 5 4 2 40 40 H 1.08993 * 110.99841 * 81.01946 * 6 5 4 41 41 H 1.09004 * 110.99248 * 204.84199 * 6 5 4 42 42 H 1.09003 * 110.70508 * 277.27119 * 7 6 5 43 43 H 1.09001 * 110.70458 * 154.04138 * 7 6 5 44 44 H 0.96998 * 120.00417 * 0.02562 * 12 10 8 45 45 H 1.08997 * 109.47019 * 60.00091 * 13 12 10 46 46 H 1.09001 * 109.47185 * 300.00553 * 13 12 10 47 47 H 1.08996 * 110.54055 * 328.72748 * 18 16 14 48 48 H 1.08998 * 110.46049 * 206.16295 * 18 16 14 49 49 H 0.96995 * 119.99412 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.40540 * 158.63069 * 28 19 18 51 51 H 1.08998 * 110.41189 * 280.94804 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3041 -1.9702 1.4027 6 6 2.3589 -2.9199 2.0231 7 6 3.6452 -2.4972 1.2658 8 6 3.4631 -0.9744 1.0944 9 1 4.0026 -0.4434 1.8788 10 6 3.9722 -0.5461 -0.2578 11 8 3.5805 -1.1076 -1.2589 12 7 4.8627 0.4609 -0.3546 13 6 5.3572 0.8776 -1.6691 14 6 6.3492 2.0299 -1.4991 15 1 6.9082 2.0335 -0.5633 16 6 5.9648 3.3852 -2.0961 17 1 4.9853 3.5109 -2.5573 18 6 6.6952 4.6437 -1.5679 19 7 7.9081 4.7477 -2.4121 20 6 8.4794 5.8812 -2.9258 21 1 9.1989 5.8075 -3.7279 22 6 8.1334 7.1251 -2.4158 23 7 7.4053 7.2088 -1.3225 24 14 8.7015 8.6802 -3.2810 25 1 7.7477 9.0185 -4.3677 26 1 10.0520 8.4603 -3.8582 27 1 8.7564 9.7978 -2.3048 28 6 8.3667 3.3477 -2.5689 29 6 7.0693 2.5311 -2.7525 30 1 6.9331 2.0048 -3.6973 31 1 -0.3633 0.3994 0.9468 32 1 -0.3633 0.6202 -0.8194 33 1 -0.3633 -1.0198 -0.1275 34 1 1.8934 -0.5138 -0.8900 35 1 1.6967 1.9493 -0.9018 36 1 1.6568 1.9632 0.8776 37 1 3.1297 1.4426 0.0244 38 1 0.4681 -1.8320 2.0884 39 1 0.9511 -2.3633 0.4494 40 1 2.4608 -2.7443 3.0940 41 1 2.1121 -3.9624 1.8218 42 1 3.7007 -2.9903 0.2953 43 1 4.5320 -2.7148 1.8610 44 1 5.1762 0.9098 0.4461 45 1 4.5199 1.2064 -2.2847 46 1 5.8558 0.0376 -2.1528 47 1 6.9705 4.5150 -0.5212 48 1 6.0693 5.5274 -1.6914 49 1 7.1639 8.0779 -0.9660 50 1 9.0033 3.2526 -3.4486 51 1 8.9008 3.0205 -1.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978154838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = 20.540559 kcal Electronic energy + Delta-G solvation = -28093.031025 eV Core-core repulsion = 24414.671804 eV Total energy + Delta-G solvation = -3678.359221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07682 -40.46649 -38.85865 -36.37448 -35.42108 -35.04551 -32.79757 -31.05010 -30.13991 -28.93509 -28.65541 -27.84789 -26.60436 -23.75856 -22.83404 -22.36692 -21.85917 -21.58281 -20.88134 -20.32311 -18.84666 -18.10258 -17.84593 -17.18803 -16.83486 -16.45751 -16.23555 -15.85615 -15.40502 -15.12392 -14.82715 -14.78315 -14.61982 -14.39679 -14.22227 -13.83090 -13.42253 -13.29458 -13.18794 -13.14760 -13.03954 -12.92501 -12.73746 -12.71725 -12.33804 -12.18443 -12.06045 -12.00274 -11.94797 -11.90188 -11.80501 -11.73619 -11.67264 -11.19996 -10.91928 -10.65775 -10.58573 -9.98442 -9.23584 -8.90588 -7.92737 -5.28830 1.44504 1.45712 1.47908 1.55994 2.06013 2.47508 2.74295 2.92948 3.25486 3.49262 3.59661 3.67798 3.71063 3.81229 3.84081 4.09454 4.10638 4.17492 4.20575 4.27072 4.37673 4.42731 4.48869 4.52787 4.53882 4.65695 4.69993 4.73966 4.76151 4.86707 4.88615 4.90968 4.92540 5.01759 5.02377 5.04554 5.08272 5.18555 5.21870 5.31641 5.33737 5.37697 5.43769 5.44986 5.53009 5.65707 5.90985 6.01270 6.17632 6.46798 7.00776 7.13672 7.67733 8.46306 9.20990 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.002473 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.078388 B =11317.339801 C =11875.728526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.034 3.966 3 C -0.157 4.157 4 N -0.500 5.500 5 C 0.035 3.965 6 C -0.119 4.119 7 C -0.128 4.128 8 C 0.051 3.949 9 H 0.119 0.881 10 C 0.510 3.490 11 O -0.574 6.574 12 N -0.711 5.711 13 C 0.164 3.836 14 C -0.109 4.109 15 H 0.110 0.890 16 C -0.175 4.175 17 H 0.108 0.892 18 C 0.191 3.809 19 N -0.620 5.620 20 C -0.242 4.242 21 H 0.079 0.921 22 C -0.062 4.062 23 N -0.946 5.946 24 Si 0.979 3.021 25 H -0.285 1.285 26 H -0.268 1.268 27 H -0.293 1.293 28 C 0.148 3.852 29 C -0.159 4.159 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.415 0.585 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.005 0.995 48 H 0.049 0.951 49 H 0.250 0.750 50 H 0.057 0.943 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -20.942 7.638 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 C -0.215 4.215 4 N -0.226 5.226 5 C -0.092 4.092 6 C -0.157 4.157 7 C -0.167 4.167 8 C -0.060 4.060 9 H 0.137 0.863 10 C 0.298 3.702 11 O -0.454 6.454 12 N -0.364 5.364 13 C 0.040 3.960 14 C -0.128 4.128 15 H 0.128 0.872 16 C -0.195 4.195 17 H 0.126 0.874 18 C 0.065 3.935 19 N -0.345 5.345 20 C -0.371 4.371 21 H 0.097 0.903 22 C -0.256 4.256 23 N -0.593 5.593 24 Si 0.807 3.193 25 H -0.212 1.212 26 H -0.193 1.193 27 H -0.220 1.220 28 C 0.023 3.977 29 C -0.179 4.179 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.252 0.748 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.023 0.977 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.588 -20.716 7.337 24.844 hybrid contribution 0.557 1.114 -0.916 1.546 sum -11.031 -19.602 6.421 23.391 Atomic orbital electron populations 1.21857 0.93344 1.02049 1.02527 1.22419 0.96895 0.95456 0.92681 1.22112 1.02540 0.95121 1.01689 1.64250 1.00687 1.21498 1.36184 1.23207 0.97976 0.88078 0.99919 1.22708 0.92715 0.99596 1.00685 1.22779 1.00756 0.91686 1.01438 1.22811 0.91323 0.98695 0.93185 0.86313 1.21301 0.77902 0.78807 0.92231 1.90612 1.58309 1.56420 1.40028 1.46177 1.44377 1.35610 1.10200 1.20655 0.95406 0.95052 0.84843 1.22421 0.99877 0.92719 0.97816 0.87198 1.24102 0.98618 0.91299 1.05447 0.87404 1.20860 0.87499 0.93850 0.91280 1.45527 1.27637 1.01607 1.59699 1.19368 1.21083 0.84250 1.12404 0.90283 1.25738 1.01438 1.00829 0.97570 1.70087 1.43266 1.23570 1.22399 0.85097 0.78310 0.78695 0.77230 1.21199 1.19283 1.21966 1.21302 0.93731 0.84078 0.98620 1.23737 0.94576 1.02033 0.97516 0.85653 0.91492 0.92206 0.92196 0.92109 0.93184 0.91752 0.91519 0.88695 0.94113 0.88999 0.89288 0.92127 0.88192 0.74817 0.92226 0.90697 0.97732 0.93219 0.94113 0.92499 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.61 71.98 0.62 -1.96 16 2 C 0.03 0.74 2.13 44.92 0.10 0.83 16 3 C -0.16 -3.58 8.98 71.98 0.65 -2.94 16 4 N -0.50 -9.41 5.03 -839.86 -4.22 -13.64 16 5 C 0.04 0.54 5.42 86.77 0.47 1.01 16 6 C -0.12 -1.38 7.08 31.98 0.23 -1.16 16 7 C -0.13 -1.88 6.43 31.78 0.20 -1.68 16 8 C 0.05 0.90 3.60 44.51 0.16 1.06 16 9 H 0.12 1.67 7.95 -2.38 -0.02 1.65 16 10 C 0.51 11.63 4.01 87.66 0.35 11.98 16 11 O -0.57 -17.18 13.91 -3.04 -0.04 -17.22 16 12 N -0.71 -14.77 3.77 -463.07 -1.75 -16.52 16 13 C 0.16 3.95 5.95 86.38 0.51 4.46 16 14 C -0.11 -3.03 5.39 -10.79 -0.06 -3.08 16 15 H 0.11 2.97 8.04 -2.39 -0.02 2.95 16 16 C -0.17 -6.34 6.76 -9.74 -0.07 -6.40 16 17 H 0.11 3.78 8.12 -2.39 -0.02 3.76 16 18 C 0.19 9.21 5.70 86.68 0.49 9.71 16 19 N -0.62 -31.91 3.37 -687.35 -2.32 -34.23 16 20 C -0.24 -13.61 10.35 84.03 0.87 -12.74 16 21 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 22 C -0.06 -3.51 5.39 84.86 0.46 -3.05 16 23 N -0.95 -56.62 10.91 21.65 0.24 -56.39 16 24 Si 0.98 45.48 29.56 68.60 2.03 47.51 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 C 0.15 5.99 7.03 86.53 0.61 6.60 16 29 C -0.16 -5.21 6.85 -9.89 -0.07 -5.28 16 30 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.01 6.67 -2.38 -0.02 0.99 16 34 H 0.06 1.70 4.85 -2.39 -0.01 1.69 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.54 4.43 -2.39 -0.01 1.53 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 0.72 6.86 -2.39 -0.02 0.70 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 1.16 7.37 -2.39 -0.02 1.14 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.41 7.01 8.22 -92.71 -0.76 6.24 16 45 H 0.06 1.59 7.94 -2.39 -0.02 1.57 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 47 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.05 2.75 6.57 -2.39 -0.02 2.74 16 49 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 50 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -68.65 386.57 -0.39 -69.04 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.15 Total: 24.07 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.53 Total: -2.64 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -8.05 Total: -120.76 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.04 Total: -17.22 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.65 -0.39 -69.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978154838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.578 kcal (2) G-P(sol) polarization free energy of solvation -68.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds