Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.90732 * 306.50110 * 3 2 1 5 5 C 1.53998 * 109.92031 * 185.40109 * 3 2 1 6 6 H 1.09002 * 110.30550 * 358.23910 * 5 3 2 7 7 C 1.50696 * 110.31065 * 120.30594 * 5 3 2 8 8 O 1.21281 * 120.00235 * 0.02562 * 7 5 3 9 9 N 1.34779 * 119.99692 * 179.97438 * 7 5 3 10 10 C 1.46509 * 119.99884 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46849 * 179.97438 * 10 9 7 12 12 H 1.08997 * 115.52116 * 330.42193 * 11 10 9 13 13 C 1.52999 * 117.44040 * 184.99771 * 11 10 9 14 14 H 1.08999 * 119.53895 * 5.76562 * 13 11 10 15 15 C 1.54385 * 118.12083 * 160.85483 * 13 11 10 16 16 N 1.48149 * 104.61703 * 87.19541 * 15 13 11 17 17 C 1.36932 * 127.83688 * 140.41174 * 16 15 13 18 18 H 1.08006 * 120.00167 * 195.63382 * 17 16 15 19 19 C 1.38814 * 120.00293 * 15.63593 * 17 16 15 20 20 N 1.31617 * 119.99755 * 9.07016 * 19 17 16 21 21 Si 1.86802 * 120.00236 * 189.07020 * 19 17 16 22 22 H 1.48494 * 109.47196 * 89.99991 * 21 19 17 23 23 H 1.48499 * 109.47095 * 210.00297 * 21 19 17 24 24 H 1.48500 * 109.46921 * 330.00207 * 21 19 17 25 25 C 1.48145 * 104.32142 * 320.41314 * 16 15 13 26 26 C 1.52883 * 117.38769 * 115.65368 * 11 10 9 27 27 H 1.08995 * 120.24431 * 356.20424 * 26 11 10 28 28 C 1.54596 * 105.13823 * 239.22800 * 5 3 2 29 29 C 1.54938 * 102.92221 * 338.03626 * 28 5 3 30 30 N 1.47901 * 110.08355 * 67.70732 * 3 2 1 31 31 C 1.46898 * 111.00044 * 265.29116 * 30 3 2 32 32 H 1.09004 * 109.46969 * 172.81350 * 1 2 3 33 33 H 1.09003 * 109.46452 * 292.80826 * 1 2 3 34 34 H 1.09000 * 109.47469 * 52.81149 * 1 2 3 35 35 H 1.09009 * 109.46869 * 240.00463 * 2 1 3 36 36 H 1.08998 * 109.47837 * 120.00410 * 2 1 3 37 37 H 0.97002 * 120.00036 * 0.02562 * 9 7 5 38 38 H 1.09004 * 109.46446 * 60.00456 * 10 9 7 39 39 H 1.08992 * 109.46848 * 300.00374 * 10 9 7 40 40 H 1.09000 * 110.41268 * 328.41142 * 15 13 11 41 41 H 1.09004 * 110.40780 * 205.97922 * 15 13 11 42 42 H 0.97000 * 120.00126 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.40276 * 158.37086 * 25 16 15 44 44 H 1.08999 * 110.40548 * 280.68150 * 25 16 15 45 45 H 1.08997 * 110.72629 * 96.39551 * 28 5 3 46 46 H 1.08999 * 110.72290 * 219.68352 * 28 5 3 47 47 H 1.09000 * 110.66905 * 278.98716 * 29 28 5 48 48 H 1.09001 * 110.66840 * 155.85106 * 29 28 5 49 49 H 1.08998 * 109.47078 * 65.66752 * 31 30 3 50 50 H 1.09006 * 109.46888 * 185.66061 * 31 30 3 51 51 H 1.08994 * 109.47086 * 305.65916 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5889 1.9956 -0.8238 5 6 3.5739 1.4567 -0.1363 6 1 3.9600 0.4379 -0.1713 7 6 3.9820 2.2126 -1.3744 8 8 3.1361 2.7018 -2.0927 9 7 5.2872 2.3458 -1.6830 10 6 5.6841 3.0811 -2.8864 11 6 7.2097 3.0843 -3.0021 12 1 7.7524 3.0417 -2.0578 13 6 7.8292 3.9050 -4.1351 14 1 7.1892 4.5299 -4.7580 15 6 9.3182 4.2961 -4.0202 16 7 10.0521 3.1493 -4.6042 17 6 11.1611 3.1826 -5.4067 18 1 11.4490 2.3051 -5.9668 19 6 11.9154 4.3441 -5.5005 20 7 11.6749 5.3522 -4.6893 21 14 13.2719 4.4763 -6.7781 22 1 12.7139 5.0329 -8.0367 23 1 14.3425 5.3725 -6.2724 24 1 13.8375 3.1286 -7.0408 25 6 9.3139 1.9585 -4.1230 26 6 7.8256 2.3617 -4.2005 27 1 7.1903 1.8173 -4.8991 28 6 4.0849 2.1833 1.1290 29 6 2.8508 3.0049 1.5789 30 7 1.7125 2.0969 1.2853 31 6 0.4527 2.8462 1.1885 32 1 -0.3633 -1.0196 -0.1286 33 1 -0.3632 0.3984 0.9474 34 1 -0.3634 0.6211 -0.8187 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 5.9638 1.9548 -1.1082 38 1 5.3230 4.1075 -2.8205 39 1 5.2536 2.6001 -3.7645 40 1 9.5959 4.4326 -2.9751 41 1 9.5176 5.2044 -4.5890 42 1 12.2023 6.1638 -4.7546 43 1 9.5100 1.1030 -4.7694 44 1 9.5924 1.7286 -3.0946 45 1 4.3710 1.4650 1.8973 46 1 4.9186 2.8418 0.8854 47 1 2.7687 3.9244 0.9995 48 1 2.9026 3.2243 2.6454 49 1 -0.3717 2.1517 1.0271 50 1 0.2865 3.3986 2.1135 51 1 0.5085 3.5445 0.3534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978177154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = 20.820686 kcal Electronic energy + Delta-G solvation = -27281.106452 eV Core-core repulsion = 23602.759379 eV Total energy + Delta-G solvation = -3678.347073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.72702 -39.05723 -38.23842 -35.04846 -33.66032 -33.34511 -32.65613 -30.83208 -28.51685 -27.59654 -27.16598 -26.10083 -24.76207 -23.09394 -22.24064 -21.19723 -20.76302 -20.26823 -19.56560 -19.26968 -17.41709 -16.83604 -16.27996 -16.09096 -15.67429 -15.18882 -15.00694 -14.74146 -14.33063 -13.86212 -13.78276 -13.62443 -13.45067 -13.35616 -13.09223 -12.78547 -12.68232 -12.64474 -12.47130 -11.88931 -11.84107 -11.72406 -11.48300 -11.28977 -11.13474 -11.09564 -10.94463 -10.86459 -10.79498 -10.67714 -10.33807 -10.15115 -9.95619 -9.76487 -9.45507 -9.14939 -8.99408 -8.72844 -8.66447 -6.89765 -5.82582 -3.17035 2.49030 2.99042 3.36445 3.41728 3.43544 3.71427 4.09731 4.17262 4.28756 4.43738 4.54116 4.75964 4.83756 4.89247 4.97193 5.05114 5.07710 5.20885 5.23547 5.25258 5.33017 5.35359 5.40815 5.41882 5.47183 5.50710 5.59588 5.63324 5.69414 5.75978 5.76593 5.77358 5.85517 5.88207 5.93824 5.95643 6.09893 6.20573 6.31950 6.52282 6.56043 6.62607 6.67463 6.74806 6.88361 7.32170 7.40099 7.50046 7.68938 8.09315 8.18112 9.08258 9.71013 10.47942 11.31741 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.035066 B = 0.002030 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.293348 B =13788.751532 C =14056.822644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C 0.071 3.929 4 H 0.082 0.918 5 C -0.120 4.120 6 H 0.108 0.892 7 C 0.517 3.483 8 O -0.543 6.543 9 N -0.721 5.721 10 C 0.154 3.846 11 C -0.149 4.149 12 H 0.103 0.897 13 C -0.163 4.163 14 H 0.103 0.897 15 C 0.183 3.817 16 N -0.594 5.594 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.169 4.169 27 H 0.103 0.897 28 C -0.114 4.114 29 C 0.033 3.967 30 N -0.514 5.514 31 C 0.009 3.991 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.023 0.977 41 H 0.090 0.910 42 H 0.254 0.746 43 H 0.050 0.950 44 H 0.024 0.976 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.046 0.954 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.198 -8.050 13.462 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.038 4.038 4 H 0.100 0.900 5 C -0.142 4.142 6 H 0.126 0.874 7 C 0.303 3.697 8 O -0.420 6.420 9 N -0.372 5.372 10 C 0.031 3.969 11 C -0.168 4.168 12 H 0.120 0.880 13 C -0.183 4.183 14 H 0.121 0.879 15 C 0.058 3.942 16 N -0.318 5.318 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.027 3.973 26 C -0.189 4.189 27 H 0.121 0.879 28 C -0.152 4.152 29 C -0.095 4.095 30 N -0.238 5.238 31 C -0.139 4.139 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.632 -7.917 13.237 25.760 hybrid contribution 1.101 0.594 -1.066 1.643 sum -19.531 -7.323 12.171 24.150 Atomic orbital electron populations 1.21856 0.95854 1.01353 1.01893 1.21503 0.96218 0.94831 1.01903 1.22485 0.92400 0.96745 0.92120 0.90030 1.22215 0.97504 1.01020 0.93485 0.87384 1.20461 0.82457 0.80170 0.86645 1.90675 1.50460 1.48845 1.52067 1.46023 1.07209 1.56413 1.27541 1.20880 0.92877 0.96332 0.86800 1.22501 0.92702 1.06518 0.95098 0.87950 1.24226 1.00364 0.94129 0.99613 0.87860 1.21080 0.82964 0.93285 0.96918 1.45207 1.30135 0.99613 1.56838 1.19003 1.00361 0.98704 1.17468 0.90561 1.24907 0.98760 0.97402 0.99262 1.69894 1.42484 1.05733 1.38086 0.86100 0.81137 0.77529 0.80881 1.21477 1.21640 1.20529 1.21146 0.87764 0.91527 0.96837 1.23985 0.98729 0.96424 0.99802 0.87919 1.22515 0.97734 0.99197 0.95766 1.23251 0.90131 0.94684 1.01433 1.64712 1.02292 1.27114 1.29662 1.22682 0.92729 0.97665 1.00873 0.92953 0.91938 0.93059 0.91840 0.91168 0.76301 0.91232 0.91437 0.95900 0.89195 0.93540 0.93196 0.95872 0.89451 0.90329 0.93528 0.89643 0.90612 0.91514 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.81 37.16 0.33 -0.82 16 2 C -0.11 -0.87 5.39 -26.73 -0.14 -1.02 16 3 C 0.07 0.68 2.19 -66.64 -0.15 0.53 16 4 H 0.08 1.00 5.91 -51.93 -0.31 0.69 16 5 C -0.12 -1.07 3.02 -90.41 -0.27 -1.35 16 6 H 0.11 0.79 7.69 -51.93 -0.40 0.40 16 7 C 0.52 6.18 7.06 -10.99 -0.08 6.10 16 8 O -0.54 -8.58 15.24 5.56 0.08 -8.50 16 9 N -0.72 -7.93 5.34 -60.29 -0.32 -8.25 16 10 C 0.15 2.03 5.95 -4.04 -0.02 2.01 16 11 C -0.15 -2.21 5.38 -90.68 -0.49 -2.70 16 12 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 13 C -0.16 -3.02 6.86 -89.12 -0.61 -3.63 16 14 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 15 C 0.18 4.33 5.70 -2.41 -0.01 4.32 16 16 N -0.59 -15.09 3.38 -168.86 -0.57 -15.66 16 17 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 18 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 19 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 20 N -0.92 -26.63 10.87 55.49 0.60 -26.03 16 21 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.15 3.15 7.03 -2.41 -0.02 3.13 16 26 C -0.17 -2.92 6.74 -89.18 -0.60 -3.52 16 27 H 0.10 1.65 8.13 -51.93 -0.42 1.23 16 28 C -0.11 -0.86 6.59 -24.87 -0.16 -1.02 16 29 C 0.03 0.28 6.56 -1.89 -0.01 0.26 16 30 N -0.51 -4.59 5.09 -230.78 -1.17 -5.77 16 31 C 0.01 0.07 9.10 60.06 0.55 0.62 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.46 6.22 -51.93 -0.32 0.14 16 34 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 3.52 8.40 -40.82 -0.34 3.18 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.39 6.52 -51.93 -0.34 2.05 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.58 7.68 -51.93 -0.40 0.18 16 47 H 0.05 0.45 8.02 -51.93 -0.42 0.03 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.56 5.40 -51.93 -0.28 0.28 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.03 0.28 7.94 -51.93 -0.41 -0.13 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -31.59 394.68 -11.50 -43.08 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -9.09 Total: 2.17 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.95 Total: -3.80 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -1.46 Total: -55.70 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.59 -11.50 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978177154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.904 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds