Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.90732 * 306.50110 * 3 2 1 5 5 C 1.53998 * 109.92031 * 185.40109 * 3 2 1 6 6 H 1.09002 * 110.30550 * 358.23910 * 5 3 2 7 7 C 1.50696 * 110.31065 * 120.30594 * 5 3 2 8 8 O 1.21281 * 120.00235 * 0.02562 * 7 5 3 9 9 N 1.34779 * 119.99692 * 179.97438 * 7 5 3 10 10 C 1.46509 * 119.99884 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46849 * 179.97438 * 10 9 7 12 12 H 1.08997 * 115.52116 * 330.42193 * 11 10 9 13 13 C 1.52999 * 117.44040 * 184.99771 * 11 10 9 14 14 H 1.08999 * 119.53895 * 5.76562 * 13 11 10 15 15 C 1.54385 * 118.12083 * 160.85483 * 13 11 10 16 16 N 1.48149 * 104.61703 * 87.19541 * 15 13 11 17 17 C 1.36932 * 127.83688 * 140.41174 * 16 15 13 18 18 H 1.08006 * 120.00167 * 195.63382 * 17 16 15 19 19 C 1.38814 * 120.00293 * 15.63593 * 17 16 15 20 20 N 1.31617 * 119.99755 * 9.07016 * 19 17 16 21 21 Si 1.86802 * 120.00236 * 189.07020 * 19 17 16 22 22 H 1.48494 * 109.47196 * 89.99991 * 21 19 17 23 23 H 1.48499 * 109.47095 * 210.00297 * 21 19 17 24 24 H 1.48500 * 109.46921 * 330.00207 * 21 19 17 25 25 C 1.48145 * 104.32142 * 320.41314 * 16 15 13 26 26 C 1.52883 * 117.38769 * 115.65368 * 11 10 9 27 27 H 1.08995 * 120.24431 * 356.20424 * 26 11 10 28 28 C 1.54596 * 105.13823 * 239.22800 * 5 3 2 29 29 C 1.54938 * 102.92221 * 338.03626 * 28 5 3 30 30 N 1.47901 * 110.08355 * 67.70732 * 3 2 1 31 31 C 1.46898 * 111.00044 * 265.29116 * 30 3 2 32 32 H 1.09004 * 109.46969 * 172.81350 * 1 2 3 33 33 H 1.09003 * 109.46452 * 292.80826 * 1 2 3 34 34 H 1.09000 * 109.47469 * 52.81149 * 1 2 3 35 35 H 1.09009 * 109.46869 * 240.00463 * 2 1 3 36 36 H 1.08998 * 109.47837 * 120.00410 * 2 1 3 37 37 H 0.97002 * 120.00036 * 0.02562 * 9 7 5 38 38 H 1.09004 * 109.46446 * 60.00456 * 10 9 7 39 39 H 1.08992 * 109.46848 * 300.00374 * 10 9 7 40 40 H 1.09000 * 110.41268 * 328.41142 * 15 13 11 41 41 H 1.09004 * 110.40780 * 205.97922 * 15 13 11 42 42 H 0.97000 * 120.00126 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.40276 * 158.37086 * 25 16 15 44 44 H 1.08999 * 110.40548 * 280.68150 * 25 16 15 45 45 H 1.08997 * 110.72629 * 96.39551 * 28 5 3 46 46 H 1.08999 * 110.72290 * 219.68352 * 28 5 3 47 47 H 1.09000 * 110.66905 * 278.98716 * 29 28 5 48 48 H 1.09001 * 110.66840 * 155.85106 * 29 28 5 49 49 H 1.08998 * 109.47078 * 65.66752 * 31 30 3 50 50 H 1.09006 * 109.46888 * 185.66061 * 31 30 3 51 51 H 1.08994 * 109.47086 * 305.65916 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5889 1.9956 -0.8238 5 6 3.5739 1.4567 -0.1363 6 1 3.9600 0.4379 -0.1713 7 6 3.9820 2.2126 -1.3744 8 8 3.1361 2.7018 -2.0927 9 7 5.2872 2.3458 -1.6830 10 6 5.6841 3.0811 -2.8864 11 6 7.2097 3.0843 -3.0021 12 1 7.7524 3.0417 -2.0578 13 6 7.8292 3.9050 -4.1351 14 1 7.1892 4.5299 -4.7580 15 6 9.3182 4.2961 -4.0202 16 7 10.0521 3.1493 -4.6042 17 6 11.1611 3.1826 -5.4067 18 1 11.4490 2.3051 -5.9668 19 6 11.9154 4.3441 -5.5005 20 7 11.6749 5.3522 -4.6893 21 14 13.2719 4.4763 -6.7781 22 1 12.7139 5.0329 -8.0367 23 1 14.3425 5.3725 -6.2724 24 1 13.8375 3.1286 -7.0408 25 6 9.3139 1.9585 -4.1230 26 6 7.8256 2.3617 -4.2005 27 1 7.1903 1.8173 -4.8991 28 6 4.0849 2.1833 1.1290 29 6 2.8508 3.0049 1.5789 30 7 1.7125 2.0969 1.2853 31 6 0.4527 2.8462 1.1885 32 1 -0.3633 -1.0196 -0.1286 33 1 -0.3632 0.3984 0.9474 34 1 -0.3634 0.6211 -0.8187 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 5.9638 1.9548 -1.1082 38 1 5.3230 4.1075 -2.8205 39 1 5.2536 2.6001 -3.7645 40 1 9.5959 4.4326 -2.9751 41 1 9.5176 5.2044 -4.5890 42 1 12.2023 6.1638 -4.7546 43 1 9.5100 1.1030 -4.7694 44 1 9.5924 1.7286 -3.0946 45 1 4.3710 1.4650 1.8973 46 1 4.9186 2.8418 0.8854 47 1 2.7687 3.9244 0.9995 48 1 2.9026 3.2243 2.6454 49 1 -0.3717 2.1517 1.0271 50 1 0.2865 3.3986 2.1135 51 1 0.5085 3.5445 0.3534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978177154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = 0.431133 kcal Electronic energy + Delta-G solvation = -27281.990609 eV Core-core repulsion = 23602.759379 eV Total energy + Delta-G solvation = -3679.231231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.58570 -40.47039 -39.19659 -36.36860 -35.07356 -34.15257 -33.50201 -32.59700 -29.37174 -28.92477 -28.73455 -27.22565 -26.14666 -23.84262 -23.07320 -22.73093 -21.81706 -21.26730 -20.89023 -20.51849 -18.85262 -18.27047 -17.25424 -16.89697 -16.83380 -16.43233 -16.01359 -15.94516 -15.69466 -15.27185 -14.85048 -14.65991 -14.55041 -14.26881 -14.18715 -14.07729 -13.90953 -13.39803 -13.31569 -13.19078 -13.10952 -12.89751 -12.74461 -12.49335 -12.40106 -12.31902 -12.12890 -11.98966 -11.94793 -11.77689 -11.74154 -11.61853 -11.41172 -11.04692 -10.86501 -10.72073 -10.52043 -10.07869 -9.44935 -8.91603 -7.92848 -5.29057 1.45561 1.47543 1.56205 1.56771 2.04233 2.46588 2.71630 3.03966 3.25121 3.47256 3.60108 3.64178 3.68308 3.76702 3.83332 4.13663 4.15962 4.21890 4.26335 4.33200 4.41240 4.42733 4.43536 4.54871 4.56241 4.57652 4.64261 4.67608 4.72635 4.76556 4.89935 4.92906 4.97604 4.98609 5.01918 5.12165 5.13977 5.16496 5.19662 5.32684 5.33569 5.43665 5.44867 5.49047 5.52019 5.65388 5.88472 6.05261 6.17182 6.51904 7.00231 7.19449 7.67502 8.45646 9.20857 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.035066 B = 0.002030 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.293348 B =13788.751532 C =14056.822644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.070 3.930 4 H 0.050 0.950 5 C -0.115 4.115 6 H 0.132 0.868 7 C 0.516 3.484 8 O -0.585 6.585 9 N -0.711 5.711 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.112 0.888 13 C -0.180 4.180 14 H 0.111 0.889 15 C 0.189 3.811 16 N -0.621 5.621 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.947 5.947 21 Si 0.980 3.020 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.148 3.852 26 C -0.158 4.158 27 H 0.123 0.877 28 C -0.107 4.107 29 C 0.028 3.972 30 N -0.513 5.513 31 C 0.009 3.991 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.417 0.583 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.003 0.997 41 H 0.051 0.949 42 H 0.250 0.750 43 H 0.056 0.944 44 H 0.030 0.970 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.027 0.973 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.831 -10.076 14.591 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.038 4.038 4 H 0.068 0.932 5 C -0.137 4.137 6 H 0.150 0.850 7 C 0.304 3.696 8 O -0.466 6.466 9 N -0.362 5.362 10 C 0.040 3.960 11 C -0.125 4.125 12 H 0.130 0.870 13 C -0.200 4.200 14 H 0.129 0.871 15 C 0.063 3.937 16 N -0.346 5.346 17 C -0.369 4.369 18 H 0.098 0.902 19 C -0.258 4.258 20 N -0.595 5.595 21 Si 0.808 3.192 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.023 3.977 26 C -0.177 4.177 27 H 0.140 0.860 28 C -0.145 4.145 29 C -0.100 4.100 30 N -0.236 5.236 31 C -0.139 4.139 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.046 0.954 48 H 0.119 0.881 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -21.268 -9.987 14.391 27.553 hybrid contribution 1.254 1.212 -1.379 2.224 sum -20.013 -8.775 13.012 25.433 Atomic orbital electron populations 1.21833 0.95603 1.01779 1.01546 1.21494 0.96488 0.93842 1.02348 1.22455 0.92799 0.97228 0.91361 0.93167 1.22259 0.97122 1.01865 0.92441 0.85018 1.20991 0.82011 0.79567 0.87035 1.90669 1.51614 1.50636 1.53639 1.45876 1.07506 1.55900 1.26951 1.20639 0.91150 0.96464 0.87767 1.22379 0.93648 1.02270 0.94197 0.87022 1.23915 0.97731 0.95248 1.03116 0.87097 1.20806 0.86214 0.91828 0.94816 1.45535 1.30270 1.01771 1.56991 1.19382 1.01023 0.98842 1.17625 0.90160 1.25750 1.01395 0.97259 1.01383 1.70088 1.43572 1.06052 1.39797 0.85061 0.78181 0.77797 0.78190 1.21351 1.22026 1.19095 1.21308 0.89157 0.90206 0.97006 1.23921 0.97265 0.94918 1.01623 0.85950 1.22557 0.97224 0.99382 0.95387 1.23338 0.90535 0.94043 1.02064 1.64781 1.02618 1.27234 1.29017 1.22705 0.92851 0.97570 1.00778 0.91923 0.91782 0.94113 0.91776 0.90173 0.74601 0.91748 0.91664 0.97874 0.93058 0.94138 0.92534 0.95247 0.87268 0.89975 0.95443 0.88140 0.89968 0.90290 0.96901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.81 71.98 0.63 -1.44 16 2 C -0.10 -1.51 5.39 30.59 0.16 -1.34 16 3 C 0.07 1.26 2.19 45.06 0.10 1.36 16 4 H 0.05 1.25 5.91 -2.39 -0.01 1.23 16 5 C -0.12 -1.79 3.02 -10.66 -0.03 -1.82 16 6 H 0.13 1.45 7.69 -2.39 -0.02 1.44 16 7 C 0.52 11.49 7.06 87.66 0.62 12.10 16 8 O -0.59 -18.29 15.24 -3.03 -0.05 -18.34 16 9 N -0.71 -13.82 5.34 -463.05 -2.47 -16.29 16 10 C 0.16 3.96 5.95 86.38 0.51 4.47 16 11 C -0.11 -2.91 5.38 -10.83 -0.06 -2.97 16 12 H 0.11 2.95 8.04 -2.39 -0.02 2.93 16 13 C -0.18 -6.55 6.86 -9.82 -0.07 -6.62 16 14 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 15 C 0.19 9.17 5.70 86.53 0.49 9.66 16 16 N -0.62 -31.82 3.38 -688.14 -2.33 -34.15 16 17 C -0.24 -13.41 10.35 84.03 0.87 -12.54 16 18 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 19 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 20 N -0.95 -56.84 10.87 21.65 0.24 -56.60 16 21 Si 0.98 45.42 29.56 68.60 2.03 47.44 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 C 0.15 5.90 7.03 86.54 0.61 6.50 16 26 C -0.16 -5.10 6.74 -9.86 -0.07 -5.17 16 27 H 0.12 3.55 8.13 -2.39 -0.02 3.53 16 28 C -0.11 -1.31 6.59 31.80 0.21 -1.10 16 29 C 0.03 0.42 6.56 86.65 0.57 0.99 16 30 N -0.51 -8.41 5.09 -884.06 -4.50 -12.91 16 31 C 0.01 0.15 9.10 127.69 1.16 1.31 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 0.85 6.22 -2.39 -0.01 0.84 16 34 H 0.04 0.64 8.13 -2.39 -0.02 0.62 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.42 5.83 8.40 -92.71 -0.78 5.05 16 38 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.07 1.68 7.95 -2.39 -0.02 1.66 16 40 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.05 2.86 6.52 -2.38 -0.02 2.84 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.97 7.68 -2.39 -0.02 0.95 16 47 H 0.03 0.52 8.02 -2.39 -0.02 0.50 16 48 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.16 5.40 -2.39 -0.01 1.14 16 50 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.01 0.24 7.94 -2.39 -0.02 0.22 16 Total: -1.00 -70.54 394.68 -0.78 -71.31 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.13 Total: 19.31 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.18 Total: 0.22 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -9.06 Total: -119.95 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.54 -0.78 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978177154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.746 kcal (2) G-P(sol) polarization free energy of solvation -70.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds