Wall clock time and date at job start Fri Apr 10 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48811 * 111.18289 * 2 1 4 4 C 1.54941 * 103.34915 * 159.50749 * 3 2 1 5 5 C 1.54595 * 102.92198 * 322.69024 * 4 3 2 6 6 H 1.09001 * 110.30931 * 263.04719 * 5 4 3 7 7 C 1.50700 * 110.39489 * 140.91756 * 5 4 3 8 8 O 1.21280 * 119.99502 * 2.78051 * 7 5 4 9 9 N 1.34770 * 120.00025 * 182.78043 * 7 5 4 10 10 C 1.47202 * 126.70468 * 359.69110 * 9 7 5 11 11 C 1.54081 * 106.24602 * 148.58097 * 10 9 7 12 12 C 1.52999 * 112.75338 * 141.71244 * 11 10 9 13 13 C 1.54317 * 109.27941 * 267.05980 * 11 10 9 14 14 N 1.48106 * 104.71337 * 136.30599 * 13 11 10 15 15 C 1.36942 * 127.84448 * 140.19922 * 14 13 11 16 16 H 1.07994 * 120.00171 * 195.66518 * 15 14 13 17 17 C 1.38814 * 119.99700 * 15.66354 * 15 14 13 18 18 N 1.31615 * 120.00292 * 9.11473 * 17 15 14 19 19 Si 1.86800 * 119.99752 * 189.11690 * 17 15 14 20 20 H 1.48501 * 109.47143 * 59.99724 * 19 17 15 21 21 H 1.48493 * 109.47359 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47280 * 300.00505 * 19 17 15 23 23 C 1.48108 * 104.31124 * 320.21553 * 14 13 11 24 24 C 1.54318 * 104.71077 * 39.78303 * 23 14 13 25 25 C 1.53004 * 112.91643 * 98.44250 * 24 23 14 26 26 C 1.47208 * 126.70182 * 179.97438 * 9 7 5 27 27 C 1.47903 * 111.00179 * 117.33458 * 2 1 3 28 28 H 1.09002 * 109.47185 * 302.66166 * 1 2 3 29 29 H 1.08997 * 109.47236 * 62.66173 * 1 2 3 30 30 H 1.09001 * 109.46808 * 182.66745 * 1 2 3 31 31 H 1.09002 * 110.52228 * 41.07321 * 3 2 1 32 32 H 1.09005 * 110.84394 * 278.09199 * 3 2 1 33 33 H 1.09002 * 110.72027 * 204.33042 * 4 3 2 34 34 H 1.09005 * 110.72589 * 81.04982 * 4 3 2 35 35 H 1.09005 * 110.07035 * 267.90779 * 10 9 7 36 36 H 1.09004 * 110.07149 * 29.43114 * 10 9 7 37 37 H 1.09000 * 109.47035 * 301.40373 * 12 11 10 38 38 H 1.08996 * 109.46959 * 61.40251 * 12 11 10 39 39 H 1.08997 * 109.47044 * 181.39880 * 12 11 10 40 40 H 1.09001 * 110.38813 * 255.11371 * 13 11 10 41 41 H 1.08999 * 110.38799 * 17.49463 * 13 11 10 42 42 H 0.96999 * 119.99903 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.38927 * 280.97707 * 23 14 13 44 44 H 1.08999 * 110.39073 * 158.58999 * 23 14 13 45 45 H 1.08992 * 109.46815 * 182.64925 * 25 24 23 46 46 H 1.08999 * 109.46874 * 302.64644 * 25 24 23 47 47 H 1.09002 * 109.47145 * 62.64867 * 25 24 23 48 48 H 1.08991 * 110.06678 * 330.56720 * 26 9 7 49 49 H 1.09001 * 110.06875 * 92.09528 * 26 9 7 50 50 H 1.09004 * 109.91311 * 94.80707 * 27 2 1 51 51 H 1.08997 * 109.91734 * 333.70766 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0067 1.3876 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2975 0.1060 1.5979 6 1 3.2096 0.5496 2.5897 7 6 4.4702 -0.8393 1.5507 8 8 5.3827 -0.6353 0.7783 9 7 4.5049 -1.9113 2.3667 10 6 3.4876 -2.2949 3.3591 11 6 3.5165 -3.8336 3.4334 12 6 3.3260 -4.3610 4.8569 13 6 2.4708 -4.4107 2.4563 14 7 3.1638 -5.5335 1.7836 15 6 2.6508 -6.7586 1.4501 16 1 3.3151 -7.5712 1.1957 17 6 1.2768 -6.9560 1.4390 18 7 0.4634 -5.9297 1.5716 19 14 0.5822 -8.6781 1.2361 20 1 1.0594 -9.5386 2.3484 21 1 -0.9014 -8.6192 1.2566 22 1 1.0367 -9.2458 -0.0587 23 6 4.5378 -5.0306 1.5538 24 6 4.8868 -4.2446 2.8351 25 6 5.7279 -5.0569 3.8219 26 6 5.5702 -2.9243 2.4437 27 6 1.9990 -0.6340 1.2266 28 1 -0.3634 0.5546 0.8652 29 1 -0.3633 0.4719 -0.9129 30 1 -0.3633 -1.0266 0.0478 31 1 1.4272 2.0220 0.6707 32 1 2.0131 1.8010 -1.0086 33 1 3.8147 2.1354 0.9775 34 1 4.1176 0.8832 -0.2714 35 1 3.7326 -1.8660 4.3308 36 1 2.5035 -1.9543 3.0369 37 1 4.1099 -3.9614 5.5003 38 1 2.3523 -4.0476 5.2332 39 1 3.3802 -5.4496 4.8514 40 1 1.6005 -4.7743 3.0027 41 1 2.1747 -3.6559 1.7277 42 1 -0.4967 -6.0677 1.5635 43 1 4.5609 -4.3716 0.6859 44 1 5.2290 -5.8625 1.4185 45 1 5.9014 -4.4678 4.7223 46 1 5.1976 -5.9726 4.0834 47 1 6.6839 -5.3092 3.3628 48 1 6.0579 -3.0285 1.4745 49 1 6.3005 -2.6421 3.2021 50 1 2.2123 -1.6863 1.0382 51 1 1.2744 -0.5412 2.0355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982798828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:13 Heat of formation + Delta-G solvation = 6.618162 kcal Electronic energy + Delta-G solvation = -29978.550455 eV Core-core repulsion = 26299.587514 eV Total energy + Delta-G solvation = -3678.962941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.71356 -39.21369 -37.61745 -34.90211 -32.99484 -32.21937 -31.61188 -30.69420 -29.21080 -27.05074 -26.01375 -25.77403 -25.37759 -24.81138 -22.49549 -21.38435 -21.20331 -20.03001 -18.96021 -17.85818 -16.91569 -16.76908 -15.97256 -15.74066 -15.21163 -14.70594 -14.58566 -14.35313 -14.13060 -13.84693 -13.56531 -13.44995 -13.13743 -12.97396 -12.87749 -12.25641 -12.09137 -12.00248 -11.83321 -11.79150 -11.61255 -11.45364 -11.41321 -11.34479 -11.24199 -11.11914 -10.82007 -10.81220 -10.78565 -10.64321 -10.11824 -9.94070 -9.85983 -9.74507 -9.52932 -9.47841 -8.64893 -8.42352 -8.35862 -6.82894 -5.78512 -3.11885 2.82224 3.20688 3.38533 3.43550 3.44024 4.00870 4.45780 4.47886 4.55013 4.76075 4.85763 4.98644 5.20890 5.21145 5.24624 5.32220 5.41410 5.42889 5.48654 5.52327 5.58289 5.59280 5.62428 5.72864 5.80920 5.82181 5.87383 5.87881 5.97363 5.98132 6.00627 6.07664 6.12933 6.21216 6.24279 6.36737 6.45222 6.47174 6.53083 6.65831 6.74075 6.85992 6.86216 6.99136 7.02043 7.32007 7.53250 7.71271 7.81257 8.21873 8.38285 9.12336 9.75325 10.53340 11.35290 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.005067 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.433729 B = 5524.258745 C = 7026.340826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.518 5.518 3 C 0.033 3.967 4 C -0.108 4.108 5 C -0.116 4.116 6 H 0.098 0.902 7 C 0.544 3.456 8 O -0.544 6.544 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.094 4.094 12 C -0.118 4.118 13 C 0.174 3.826 14 N -0.590 5.590 15 C -0.224 4.224 16 H 0.074 0.926 17 C -0.004 4.004 18 N -0.915 5.915 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.138 3.862 24 C -0.083 4.083 25 C -0.120 4.120 26 C 0.119 3.881 27 C 0.044 3.956 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.023 0.977 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 12.631 5.625 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.242 5.242 3 C -0.095 4.095 4 C -0.146 4.146 5 C -0.138 4.138 6 H 0.116 0.884 7 C 0.332 3.668 8 O -0.422 6.422 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.096 4.096 12 C -0.175 4.175 13 C 0.048 3.952 14 N -0.313 5.313 15 C -0.352 4.352 16 H 0.092 0.908 17 C -0.201 4.201 18 N -0.561 5.561 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.012 3.988 24 C -0.086 4.086 25 C -0.178 4.178 26 C -0.004 4.004 27 C -0.084 4.084 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.138 12.381 4.619 13.847 hybrid contribution -0.860 -0.428 0.650 1.160 sum 3.278 11.953 5.268 13.467 Atomic orbital electron populations 1.22530 0.87415 1.02777 1.00493 1.64795 1.08370 1.14512 1.36538 1.23334 0.94819 0.90155 1.01164 1.22457 0.96995 0.96809 0.98353 1.22145 0.94035 0.96174 1.01471 0.88423 1.19927 0.87474 0.80485 0.78880 1.90656 1.38976 1.73933 1.38632 1.48372 1.22900 1.24812 1.38000 1.22337 0.92204 0.95957 0.91050 1.22594 0.97503 0.92016 0.97506 1.21586 1.00230 1.01936 0.93791 1.21607 0.93314 0.88847 0.91475 1.44857 1.06643 1.12664 1.67133 1.18926 0.90040 0.85788 1.40420 0.90806 1.24838 0.96020 0.97369 1.01853 1.69872 1.02336 1.28144 1.55775 0.86248 0.77876 0.83880 0.78045 1.21165 1.21633 1.21095 1.21739 0.89097 0.95337 0.92661 1.22332 0.94535 0.94031 0.97684 1.21610 0.98574 1.00069 0.97527 1.22042 0.89775 0.86948 1.01615 1.22986 0.93555 1.00529 0.91344 0.95548 0.91335 0.90579 0.93865 0.89818 0.90781 0.88694 0.92140 0.90253 0.93574 0.93042 0.91445 0.89435 0.96293 0.93669 0.95887 0.93504 0.93048 0.91438 0.93220 0.90467 0.92263 0.88688 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.41 60.06 0.57 0.77 16 2 N -0.52 -7.38 5.56 -238.46 -1.33 -8.70 16 3 C 0.03 0.38 6.58 -1.74 -0.01 0.37 16 4 C -0.11 -1.34 6.40 -24.87 -0.16 -1.50 16 5 C -0.12 -1.56 2.88 -90.41 -0.26 -1.82 16 6 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 7 C 0.54 9.06 7.04 -10.99 -0.08 8.98 16 8 O -0.54 -10.71 15.68 5.56 0.09 -10.62 16 9 N -0.61 -9.73 3.25 -171.44 -0.56 -10.28 16 10 C 0.11 1.58 5.51 -3.09 -0.02 1.57 16 11 C -0.09 -1.59 1.08 -152.16 -0.16 -1.75 16 12 C -0.12 -1.78 7.53 37.16 0.28 -1.50 16 13 C 0.17 3.87 4.96 -2.47 -0.01 3.86 16 14 N -0.59 -14.46 3.38 -169.01 -0.57 -15.03 16 15 C -0.22 -6.04 10.35 -15.06 -0.16 -6.20 16 16 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 17 C 0.00 -0.10 5.40 -17.43 -0.09 -0.20 16 18 N -0.91 -25.86 10.86 55.49 0.60 -25.26 16 19 Si 0.91 21.60 29.56 -169.99 -5.03 16.57 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 2.88 6.31 -2.47 -0.02 2.86 16 24 C -0.08 -1.39 1.08 -152.34 -0.16 -1.56 16 25 C -0.12 -1.72 7.52 37.16 0.28 -1.44 16 26 C 0.12 1.89 5.92 -3.27 -0.02 1.87 16 27 C 0.04 0.63 4.56 -2.75 -0.01 0.62 16 28 H 0.03 0.28 8.01 -51.93 -0.42 -0.13 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.43 7.97 -51.93 -0.41 0.02 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.41 6.92 -51.93 -0.36 1.06 16 35 H 0.06 0.76 7.93 -51.93 -0.41 0.34 16 36 H 0.08 1.16 4.74 -51.93 -0.25 0.91 16 37 H 0.05 0.58 7.09 -51.93 -0.37 0.21 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.14 7.17 -51.93 -0.37 0.77 16 40 H 0.09 2.19 6.26 -51.93 -0.33 1.86 16 41 H 0.02 0.46 6.37 -51.93 -0.33 0.13 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.02 0.53 7.53 -51.93 -0.39 0.13 16 44 H 0.05 0.94 7.93 -51.93 -0.41 0.53 16 45 H 0.05 0.64 7.10 -51.93 -0.37 0.27 16 46 H 0.07 1.06 7.16 -51.93 -0.37 0.69 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 49 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 50 H 0.09 1.71 5.78 -51.93 -0.30 1.41 16 51 H 0.05 0.69 7.47 -51.93 -0.39 0.31 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -30.93 375.96 -9.94 -40.87 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.77 Total: 1.86 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.04 Total: 4.93 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -1.85 Total: -59.28 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.93 -9.94 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982798828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.488 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds