Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48811 * 111.18289 * 2 1 4 4 C 1.54941 * 103.34915 * 159.50749 * 3 2 1 5 5 C 1.54595 * 102.92198 * 322.69024 * 4 3 2 6 6 H 1.09001 * 110.30931 * 263.04719 * 5 4 3 7 7 C 1.50700 * 110.39489 * 140.91756 * 5 4 3 8 8 O 1.21280 * 119.99502 * 2.78051 * 7 5 4 9 9 N 1.34770 * 120.00025 * 182.78043 * 7 5 4 10 10 C 1.47202 * 126.70468 * 359.69110 * 9 7 5 11 11 C 1.54081 * 106.24602 * 148.58097 * 10 9 7 12 12 C 1.52999 * 112.75338 * 141.71244 * 11 10 9 13 13 C 1.54317 * 109.27941 * 267.05980 * 11 10 9 14 14 N 1.48106 * 104.71337 * 136.30599 * 13 11 10 15 15 C 1.36942 * 127.84448 * 140.19922 * 14 13 11 16 16 H 1.07994 * 120.00171 * 195.66518 * 15 14 13 17 17 C 1.38814 * 119.99700 * 15.66354 * 15 14 13 18 18 N 1.31615 * 120.00292 * 9.11473 * 17 15 14 19 19 Si 1.86800 * 119.99752 * 189.11690 * 17 15 14 20 20 H 1.48501 * 109.47143 * 59.99724 * 19 17 15 21 21 H 1.48493 * 109.47359 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47280 * 300.00505 * 19 17 15 23 23 C 1.48108 * 104.31124 * 320.21553 * 14 13 11 24 24 C 1.54318 * 104.71077 * 39.78303 * 23 14 13 25 25 C 1.53004 * 112.91643 * 98.44250 * 24 23 14 26 26 C 1.47208 * 126.70182 * 179.97438 * 9 7 5 27 27 C 1.47903 * 111.00179 * 117.33458 * 2 1 3 28 28 H 1.09002 * 109.47185 * 302.66166 * 1 2 3 29 29 H 1.08997 * 109.47236 * 62.66173 * 1 2 3 30 30 H 1.09001 * 109.46808 * 182.66745 * 1 2 3 31 31 H 1.09002 * 110.52228 * 41.07321 * 3 2 1 32 32 H 1.09005 * 110.84394 * 278.09199 * 3 2 1 33 33 H 1.09002 * 110.72027 * 204.33042 * 4 3 2 34 34 H 1.09005 * 110.72589 * 81.04982 * 4 3 2 35 35 H 1.09005 * 110.07035 * 267.90779 * 10 9 7 36 36 H 1.09004 * 110.07149 * 29.43114 * 10 9 7 37 37 H 1.09000 * 109.47035 * 301.40373 * 12 11 10 38 38 H 1.08996 * 109.46959 * 61.40251 * 12 11 10 39 39 H 1.08997 * 109.47044 * 181.39880 * 12 11 10 40 40 H 1.09001 * 110.38813 * 255.11371 * 13 11 10 41 41 H 1.08999 * 110.38799 * 17.49463 * 13 11 10 42 42 H 0.96999 * 119.99903 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.38927 * 280.97707 * 23 14 13 44 44 H 1.08999 * 110.39073 * 158.58999 * 23 14 13 45 45 H 1.08992 * 109.46815 * 182.64925 * 25 24 23 46 46 H 1.08999 * 109.46874 * 302.64644 * 25 24 23 47 47 H 1.09002 * 109.47145 * 62.64867 * 25 24 23 48 48 H 1.08991 * 110.06678 * 330.56720 * 26 9 7 49 49 H 1.09001 * 110.06875 * 92.09528 * 26 9 7 50 50 H 1.09004 * 109.91311 * 94.80707 * 27 2 1 51 51 H 1.08997 * 109.91734 * 333.70766 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0067 1.3876 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2975 0.1060 1.5979 6 1 3.2096 0.5496 2.5897 7 6 4.4702 -0.8393 1.5507 8 8 5.3827 -0.6353 0.7783 9 7 4.5049 -1.9113 2.3667 10 6 3.4876 -2.2949 3.3591 11 6 3.5165 -3.8336 3.4334 12 6 3.3260 -4.3610 4.8569 13 6 2.4708 -4.4107 2.4563 14 7 3.1638 -5.5335 1.7836 15 6 2.6508 -6.7586 1.4501 16 1 3.3151 -7.5712 1.1957 17 6 1.2768 -6.9560 1.4390 18 7 0.4634 -5.9297 1.5716 19 14 0.5822 -8.6781 1.2361 20 1 1.0594 -9.5386 2.3484 21 1 -0.9014 -8.6192 1.2566 22 1 1.0367 -9.2458 -0.0587 23 6 4.5378 -5.0306 1.5538 24 6 4.8868 -4.2446 2.8351 25 6 5.7279 -5.0569 3.8219 26 6 5.5702 -2.9243 2.4437 27 6 1.9990 -0.6340 1.2266 28 1 -0.3634 0.5546 0.8652 29 1 -0.3633 0.4719 -0.9129 30 1 -0.3633 -1.0266 0.0478 31 1 1.4272 2.0220 0.6707 32 1 2.0131 1.8010 -1.0086 33 1 3.8147 2.1354 0.9775 34 1 4.1176 0.8832 -0.2714 35 1 3.7326 -1.8660 4.3308 36 1 2.5035 -1.9543 3.0369 37 1 4.1099 -3.9614 5.5003 38 1 2.3523 -4.0476 5.2332 39 1 3.3802 -5.4496 4.8514 40 1 1.6005 -4.7743 3.0027 41 1 2.1747 -3.6559 1.7277 42 1 -0.4967 -6.0677 1.5635 43 1 4.5609 -4.3716 0.6859 44 1 5.2290 -5.8625 1.4185 45 1 5.9014 -4.4678 4.7223 46 1 5.1976 -5.9726 4.0834 47 1 6.6839 -5.3092 3.3628 48 1 6.0579 -3.0285 1.4745 49 1 6.3005 -2.6421 3.2021 50 1 2.2123 -1.6863 1.0382 51 1 1.2744 -0.5412 2.0355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982798828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = -14.251764 kcal Electronic energy + Delta-G solvation = -29979.455443 eV Core-core repulsion = 26299.587514 eV Total energy + Delta-G solvation = -3679.867929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.04082 -40.48392 -38.85011 -36.54377 -34.62286 -33.38259 -32.97406 -32.47438 -30.26682 -28.54889 -27.52708 -27.01070 -26.55628 -26.41775 -24.07921 -22.70834 -22.21221 -21.55432 -20.24797 -19.27216 -18.70381 -18.08058 -17.15342 -17.00993 -16.61055 -16.44949 -15.86779 -15.72848 -15.56677 -15.22500 -14.93074 -14.80875 -14.54788 -14.31524 -14.04503 -13.46935 -13.38265 -13.28624 -13.24074 -13.15155 -13.05947 -12.90409 -12.69377 -12.59192 -12.52631 -12.48340 -12.37510 -12.14338 -12.09444 -11.98410 -11.78391 -11.75243 -11.42120 -11.20066 -11.07192 -10.84597 -10.67106 -9.67637 -9.41663 -8.84330 -7.88128 -5.23603 1.45788 1.47798 1.53607 1.54370 1.99572 2.48869 3.00981 3.29852 3.30485 3.46413 3.48220 3.60075 3.79837 3.90378 3.94489 4.13421 4.21691 4.28447 4.29887 4.32581 4.38961 4.44109 4.48082 4.51879 4.59522 4.64510 4.71819 4.76435 4.80871 4.85350 4.89336 4.92545 4.95621 4.97161 4.98945 5.07180 5.11427 5.21097 5.27153 5.29144 5.33582 5.42610 5.47846 5.52996 5.68128 5.79058 5.85880 6.04164 6.22187 6.54605 7.05235 7.09999 7.71484 8.51261 9.24135 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.005067 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.433729 B = 5524.258745 C = 7026.340826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.552 5.552 3 C 0.039 3.961 4 C -0.105 4.105 5 C -0.109 4.109 6 H 0.134 0.866 7 C 0.535 3.465 8 O -0.583 6.583 9 N -0.612 5.612 10 C 0.113 3.887 11 C -0.086 4.086 12 C -0.111 4.111 13 C 0.184 3.816 14 N -0.612 5.612 15 C -0.239 4.239 16 H 0.073 0.927 17 C -0.055 4.055 18 N -0.941 5.941 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.282 1.282 23 C 0.136 3.864 24 C -0.072 4.072 25 C -0.114 4.114 26 C 0.121 3.879 27 C 0.052 3.948 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.056 0.944 41 H -0.014 1.014 42 H 0.248 0.752 43 H -0.006 1.006 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.093 0.907 50 H 0.047 0.953 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 14.256 8.179 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.088 4.088 4 C -0.144 4.144 5 C -0.131 4.131 6 H 0.152 0.848 7 C 0.326 3.674 8 O -0.463 6.463 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.088 4.088 12 C -0.168 4.168 13 C 0.058 3.942 14 N -0.335 5.335 15 C -0.368 4.368 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.589 5.589 19 Si 0.801 3.199 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.209 1.209 23 C 0.010 3.990 24 C -0.074 4.074 25 C -0.171 4.171 26 C -0.002 4.002 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.004 0.996 42 H 0.057 0.943 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.111 0.889 50 H 0.066 0.934 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.817 14.004 7.191 16.463 hybrid contribution -1.061 -0.969 -0.279 1.463 sum 3.755 13.036 6.912 15.225 Atomic orbital electron populations 1.22495 0.86499 1.01735 1.02117 1.64713 1.09538 1.16608 1.36794 1.23369 0.94217 0.88899 1.02277 1.22453 0.97075 0.97545 0.97296 1.22213 0.91672 0.95517 1.03669 0.84833 1.20556 0.87864 0.80938 0.78084 1.90635 1.40661 1.75063 1.39974 1.48488 1.23108 1.24565 1.38130 1.22389 0.92067 0.94033 0.92501 1.22482 0.95296 0.93708 0.97332 1.21539 1.02069 1.00575 0.92651 1.21410 0.93947 0.87436 0.91381 1.45150 1.08212 1.12573 1.67607 1.19252 0.90483 0.86965 1.40058 0.90903 1.25599 0.96289 1.00858 1.02192 1.70069 1.02061 1.29863 1.56893 0.85249 0.76727 0.79798 0.78115 1.20056 1.21903 1.20867 1.21837 0.87621 0.95311 0.94248 1.22236 0.95092 0.94233 0.95873 1.21580 0.98212 0.99317 0.97982 1.22046 0.90200 0.86504 1.01480 1.22781 0.94690 0.98130 0.92059 0.93507 0.89982 0.93024 0.91191 0.89158 0.87846 0.91886 0.87885 0.90489 0.89655 0.92473 0.93657 0.92594 0.99620 0.94256 0.98849 0.93398 0.89746 0.93054 0.91919 0.92698 0.88917 0.93408 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.41 127.69 1.20 1.68 16 2 N -0.55 -15.61 5.56 -908.37 -5.05 -20.66 16 3 C 0.04 0.83 6.58 86.60 0.57 1.40 16 4 C -0.11 -2.45 6.40 31.80 0.20 -2.25 16 5 C -0.11 -2.75 2.88 -10.66 -0.03 -2.79 16 6 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 7 C 0.54 17.62 7.04 87.66 0.62 18.24 16 8 O -0.58 -23.30 15.68 -3.03 -0.05 -23.35 16 9 N -0.61 -18.90 3.25 -814.70 -2.65 -21.54 16 10 C 0.11 3.07 5.51 86.61 0.48 3.55 16 11 C -0.09 -2.84 1.08 -50.66 -0.05 -2.89 16 12 C -0.11 -3.08 7.53 71.98 0.54 -2.53 16 13 C 0.18 8.58 4.96 86.52 0.43 9.01 16 14 N -0.61 -31.40 3.38 -688.63 -2.33 -33.73 16 15 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 16 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 17 C -0.06 -3.11 5.40 84.86 0.46 -2.65 16 18 N -0.94 -55.59 10.86 21.65 0.24 -55.35 16 19 Si 0.97 45.48 29.56 68.60 2.03 47.51 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 C 0.14 5.89 6.31 86.52 0.55 6.44 16 24 C -0.07 -2.34 1.08 -50.78 -0.05 -2.40 16 25 C -0.11 -2.94 7.52 71.98 0.54 -2.39 16 26 C 0.12 3.67 5.92 86.49 0.51 4.18 16 27 C 0.05 1.49 4.56 86.45 0.39 1.89 16 28 H 0.05 0.92 8.01 -2.39 -0.02 0.90 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.13 7.97 -2.39 -0.02 1.11 16 32 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.89 6.92 -2.38 -0.02 1.88 16 35 H 0.10 2.04 7.93 -2.38 -0.02 2.03 16 36 H 0.08 2.17 4.74 -2.39 -0.01 2.16 16 37 H 0.08 1.73 7.09 -2.39 -0.02 1.71 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.04 1.47 7.17 -2.39 -0.02 1.45 16 40 H 0.06 2.94 6.26 -2.39 -0.01 2.92 16 41 H -0.01 -0.73 6.37 -2.39 -0.02 -0.75 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 43 H -0.01 -0.30 7.53 -2.39 -0.02 -0.32 16 44 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 45 H 0.08 1.66 7.10 -2.39 -0.02 1.65 16 46 H 0.05 1.52 7.16 -2.39 -0.02 1.50 16 47 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.92 7.37 -2.39 -0.02 1.91 16 49 H 0.09 2.27 7.88 -2.39 -0.02 2.25 16 50 H 0.05 1.83 5.78 -2.38 -0.01 1.82 16 51 H 0.07 1.74 7.47 -2.39 -0.02 1.72 16 Total: -1.00 -72.97 375.96 0.32 -72.65 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.90 Total: 18.53 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 7.22 Total: 15.94 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -9.79 Total: -131.28 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.97 0.32 -72.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982798828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.400 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds