Wall clock time and date at job start Fri Apr 10 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36946 * 119.99421 * 2 1 4 4 H 1.08000 * 119.99713 * 204.95254 * 3 2 1 5 5 C 1.38814 * 119.99898 * 24.95661 * 3 2 1 6 6 N 1.31615 * 120.00256 * 5.24942 * 5 3 2 7 7 Si 1.86797 * 119.99697 * 185.24527 * 5 3 2 8 8 H 1.48503 * 109.46958 * 90.00057 * 7 5 3 9 9 H 1.48498 * 109.47213 * 209.99943 * 7 5 3 10 10 H 1.48506 * 109.47375 * 330.00513 * 7 5 3 11 11 C 1.46493 * 120.00538 * 180.02562 * 2 1 3 12 12 C 1.53048 * 109.45697 * 300.00016 * 11 2 1 13 13 C 1.53195 * 109.31151 * 181.37355 * 12 11 2 14 14 N 1.46926 * 108.77212 * 305.36439 * 13 12 11 15 15 C 1.34776 * 120.63246 * 233.58503 * 14 13 12 16 16 O 1.21275 * 120.00206 * 184.45469 * 15 14 13 17 17 C 1.50710 * 119.99731 * 4.45481 * 15 14 13 18 18 C 1.54991 * 113.19831 * 58.30707 * 17 15 14 19 19 C 1.54058 * 104.75758 * 146.47894 * 18 17 15 20 20 N 1.48232 * 106.70153 * 1.00351 * 19 18 17 21 21 C 1.48803 * 105.17873 * 332.52162 * 20 19 18 22 22 C 1.47680 * 108.91377 * 88.17751 * 20 19 18 23 23 C 1.53638 * 109.89151 * 311.57812 * 22 20 19 24 24 C 1.53161 * 110.60146 * 306.55890 * 23 22 20 25 25 C 1.46926 * 118.74020 * 53.86115 * 14 13 12 26 26 C 1.53034 * 109.44911 * 60.05852 * 11 2 1 27 27 H 1.08998 * 109.47052 * 275.00923 * 1 2 3 28 28 H 1.08997 * 109.46980 * 35.01508 * 1 2 3 29 29 H 1.09005 * 109.46319 * 155.01060 * 1 2 3 30 30 H 0.96995 * 119.99829 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46254 * 180.02562 * 11 2 1 32 32 H 1.08995 * 109.49723 * 61.42299 * 12 11 2 33 33 H 1.09003 * 109.49765 * 301.32107 * 12 11 2 34 34 H 1.08995 * 109.58480 * 185.58351 * 13 12 11 35 35 H 1.09003 * 109.58909 * 65.14782 * 13 12 11 36 36 H 1.09004 * 110.37657 * 265.29589 * 18 17 15 37 37 H 1.09001 * 110.38062 * 27.65507 * 18 17 15 38 38 H 1.09005 * 110.01219 * 241.69446 * 19 18 17 39 39 H 1.09002 * 110.01205 * 120.32066 * 19 18 17 40 40 H 1.08993 * 110.93144 * 160.89301 * 21 20 19 41 41 H 1.08992 * 110.93032 * 284.56239 * 21 20 19 42 42 H 1.09009 * 109.50303 * 72.85677 * 22 20 19 43 43 H 1.08992 * 109.50346 * 192.97457 * 22 20 19 44 44 H 1.08998 * 110.18579 * 185.52022 * 23 22 20 45 45 H 1.09004 * 107.93360 * 66.16038 * 23 22 20 46 46 H 1.08996 * 109.62786 * 292.96017 * 24 23 22 47 47 H 1.08993 * 109.62746 * 172.36959 * 24 23 22 48 48 H 1.09006 * 109.58338 * 65.92947 * 25 14 13 49 49 H 1.09002 * 109.58666 * 186.34631 * 25 14 13 50 50 H 1.08995 * 109.50046 * 298.57549 * 26 11 2 51 51 H 1.09002 * 109.49471 * 58.64224 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.1540 1.2298 -0.3946 5 6 1.5527 2.3320 0.5072 6 7 0.3707 2.2592 1.0817 7 14 2.4269 3.9775 0.3746 8 1 2.0434 4.6405 -0.8977 9 1 2.0364 4.8392 1.5192 10 1 3.8959 3.7608 0.3965 11 6 2.1976 -1.2686 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6212 -3.3818 1.2623 14 7 2.3847 -4.0909 -0.0026 15 6 1.9584 -5.3694 -0.0039 16 8 1.8442 -5.9695 -1.0515 17 6 1.6236 -6.0533 1.2967 18 6 0.5190 -5.3243 2.1032 19 6 -0.2562 -6.4504 2.8135 20 7 0.4029 -7.7238 2.4380 21 6 1.0133 -7.4683 1.1052 22 6 1.4925 -7.9996 3.3959 23 6 2.3606 -6.7448 3.5757 24 6 2.8452 -6.2258 2.2186 25 6 2.6276 -3.3816 -1.2662 26 6 1.8287 -2.0695 -1.2514 27 1 -0.3633 0.0897 1.0237 28 1 -0.3633 0.8416 -0.5897 29 1 -0.3632 -0.9315 -0.4342 30 1 -0.0462 3.0599 1.4364 31 1 3.2693 -1.0691 0.0000 32 1 0.7605 -2.2926 1.2364 33 1 2.0692 -1.4908 2.1391 34 1 2.2898 -4.0011 2.0958 35 1 3.6843 -3.1642 1.3659 36 1 0.9652 -4.6506 2.8348 37 1 -0.1406 -4.7742 1.4321 38 1 -1.2944 -6.4556 2.4814 39 1 -0.2104 -6.3109 3.8936 40 1 1.7899 -8.2009 0.8857 41 1 0.2536 -7.4622 0.3237 42 1 1.0677 -8.3053 4.3522 43 1 2.1259 -8.7968 3.0070 44 1 3.2216 -6.9701 4.2049 45 1 1.7506 -5.9809 4.0578 46 1 3.5378 -6.9432 1.7784 47 1 3.3431 -5.2653 2.3505 48 1 3.6912 -3.1641 -1.3645 49 1 2.3005 -4.0008 -2.1015 50 1 0.7615 -2.2906 -1.2402 51 1 2.0704 -1.4872 -2.1405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985768835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:23 Heat of formation + Delta-G solvation = 9.278781 kcal Electronic energy + Delta-G solvation = -29589.709965 eV Core-core repulsion = 25910.862398 eV Total energy + Delta-G solvation = -3678.847568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65577 -39.32858 -37.44628 -35.13667 -33.08211 -32.35692 -31.91228 -30.49403 -29.69183 -29.38921 -26.02496 -25.47168 -24.66476 -23.68285 -22.64619 -22.21626 -21.16740 -20.30887 -19.45901 -18.39958 -16.98581 -16.81733 -16.30284 -16.23287 -15.41909 -15.04699 -14.81681 -14.23730 -14.13025 -13.89678 -13.67581 -13.51799 -13.34900 -13.11126 -12.99663 -12.84975 -12.72695 -12.43296 -12.25534 -11.89035 -11.66733 -11.64546 -11.54015 -11.16929 -11.05644 -11.01065 -10.89948 -10.82622 -10.80149 -10.59947 -10.36920 -10.25879 -10.10794 -9.88998 -9.66601 -9.51802 -8.77032 -8.58288 -8.46232 -6.75131 -5.73896 -3.22948 2.63071 3.07201 3.35341 3.41728 3.42715 3.71883 4.21269 4.36135 4.45255 4.49040 4.64452 4.77133 4.80683 4.83759 5.04973 5.13287 5.17217 5.21875 5.29269 5.35149 5.38519 5.41951 5.46433 5.49661 5.58205 5.60004 5.64752 5.71857 5.72215 5.80986 5.84558 5.89104 5.94033 5.94694 6.04956 6.15263 6.24524 6.37537 6.47330 6.51074 6.61732 6.69458 6.79593 6.95452 6.96975 7.41973 7.52546 7.73753 7.80000 8.23833 8.39567 9.23157 9.85298 10.35403 11.30109 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.003284 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.297452 B = 8524.009426 C = 8942.432056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.597 5.597 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.180 3.820 12 C -0.144 4.144 13 C 0.094 3.906 14 N -0.600 5.600 15 C 0.539 3.461 16 O -0.547 6.547 17 C -0.116 4.116 18 C -0.138 4.138 19 C 0.030 3.970 20 N -0.495 5.495 21 C 0.058 3.942 22 C 0.031 3.969 23 C -0.155 4.155 24 C -0.113 4.113 25 C 0.114 3.886 26 C -0.146 4.146 27 H 0.028 0.972 28 H 0.042 0.958 29 H -0.006 1.006 30 H 0.252 0.748 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -18.403 5.102 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.319 5.319 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.072 3.928 12 C -0.185 4.185 13 C -0.029 4.029 14 N -0.332 5.332 15 C 0.326 3.674 16 O -0.425 6.425 17 C -0.121 4.121 18 C -0.176 4.176 19 C -0.099 4.099 20 N -0.215 5.215 21 C -0.070 4.070 22 C -0.097 4.097 23 C -0.194 4.194 24 C -0.151 4.151 25 C -0.008 4.008 26 C -0.186 4.186 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.013 0.987 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.080 0.920 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.599 -19.045 4.637 19.773 hybrid contribution 1.024 1.944 0.103 2.200 sum 3.623 -17.101 4.741 18.112 Atomic orbital electron populations 1.20755 0.82706 0.95164 0.99178 1.43925 1.01799 1.00120 1.86028 1.19229 0.99222 0.86128 1.33882 0.91542 1.25100 0.97311 0.98647 0.98368 1.70050 1.15847 1.27521 1.42007 0.86255 0.79091 0.84008 0.77167 1.21524 1.21696 1.20521 1.20273 0.95928 0.86034 0.90586 1.22510 0.99892 0.94341 1.01739 1.22263 1.00314 0.94718 0.85578 1.48101 1.65419 1.11691 1.08001 1.19913 0.76390 0.81324 0.89797 1.90663 1.53917 1.64608 1.33302 1.22551 0.97728 0.97969 0.93852 1.23068 0.96666 0.98579 0.99326 1.23097 0.99251 0.87379 1.00138 1.66471 1.22547 1.30133 1.02324 1.23355 0.98716 0.92621 0.92348 1.22720 0.92544 0.97103 0.97382 1.22346 1.00613 0.99308 0.97109 1.21999 0.95941 1.02536 0.94620 1.21754 0.99685 0.93568 0.85818 1.22548 1.00134 0.94723 1.01175 0.95407 0.93924 0.98710 0.93786 0.92029 0.92129 0.90690 0.89198 0.91627 0.89859 0.90496 0.89873 0.90610 0.89895 0.89094 0.90132 0.90899 0.90829 0.91167 0.91181 0.90232 0.91769 0.89664 0.92039 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.03 8.01 59.85 0.48 4.51 16 2 N -0.60 -14.36 2.81 -173.43 -0.49 -14.85 16 3 C -0.25 -6.80 9.59 -15.05 -0.14 -6.95 16 4 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 5 C 0.00 0.11 5.24 -17.43 -0.09 0.02 16 6 N -0.91 -25.95 10.44 55.49 0.58 -25.37 16 7 Si 0.90 21.46 29.56 -169.99 -5.02 16.44 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.18 3.44 2.55 -67.89 -0.17 3.27 16 12 C -0.14 -2.37 5.34 -26.61 -0.14 -2.51 16 13 C 0.09 1.21 4.76 -3.71 -0.02 1.19 16 14 N -0.60 -8.41 2.97 -172.50 -0.51 -8.92 16 15 C 0.54 7.76 6.75 -10.98 -0.07 7.69 16 16 O -0.55 -9.58 15.64 5.56 0.09 -9.50 16 17 C -0.12 -1.30 0.66 -152.87 -0.10 -1.40 16 18 C -0.14 -1.44 4.41 -25.13 -0.11 -1.55 16 19 C 0.03 0.28 6.21 -2.54 -0.02 0.26 16 20 N -0.49 -4.93 6.06 -228.58 -1.39 -6.32 16 21 C 0.06 0.66 5.42 -1.56 -0.01 0.65 16 22 C 0.03 0.25 5.83 -3.06 -0.02 0.23 16 23 C -0.15 -1.18 5.59 -26.32 -0.15 -1.33 16 24 C -0.11 -1.04 4.69 -26.12 -0.12 -1.17 16 25 C 0.11 1.69 6.45 -3.49 -0.02 1.67 16 26 C -0.15 -2.47 5.34 -26.39 -0.14 -2.61 16 27 H 0.03 0.72 7.35 -51.93 -0.38 0.34 16 28 H 0.04 1.13 7.25 -51.93 -0.38 0.75 16 29 H -0.01 -0.12 6.47 -51.93 -0.34 -0.46 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.06 1.19 7.88 -51.93 -0.41 0.79 16 32 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.09 0.99 2.52 -51.93 -0.13 0.86 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.81 5.34 -51.93 -0.28 0.54 16 37 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.62 7.00 -51.93 -0.36 0.25 16 40 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 41 H 0.09 1.16 7.99 -51.93 -0.41 0.74 16 42 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.54 5.47 -51.93 -0.28 0.26 16 46 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 47 H 0.08 0.73 5.42 -51.93 -0.28 0.45 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.08 1.31 7.03 -51.93 -0.37 0.95 16 50 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16 51 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -30.12 364.52 -10.62 -40.74 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.52 Total: 0.32 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.85 Total: 1.97 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -1.81 Total: -55.46 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.12 -10.62 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985768835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.018 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds