Wall clock time and date at job start Fri Apr 10 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36946 * 119.99421 * 2 1 4 4 H 1.08000 * 119.99713 * 204.95254 * 3 2 1 5 5 C 1.38814 * 119.99898 * 24.95661 * 3 2 1 6 6 N 1.31615 * 120.00256 * 5.24942 * 5 3 2 7 7 Si 1.86797 * 119.99697 * 185.24527 * 5 3 2 8 8 H 1.48503 * 109.46958 * 90.00057 * 7 5 3 9 9 H 1.48498 * 109.47213 * 209.99943 * 7 5 3 10 10 H 1.48506 * 109.47375 * 330.00513 * 7 5 3 11 11 C 1.46493 * 120.00538 * 180.02562 * 2 1 3 12 12 C 1.53048 * 109.45697 * 300.00016 * 11 2 1 13 13 C 1.53195 * 109.31151 * 181.37355 * 12 11 2 14 14 N 1.46926 * 108.77212 * 305.36439 * 13 12 11 15 15 C 1.34776 * 120.63246 * 233.58503 * 14 13 12 16 16 O 1.21275 * 120.00206 * 184.45469 * 15 14 13 17 17 C 1.50710 * 119.99731 * 4.45481 * 15 14 13 18 18 C 1.54991 * 113.19831 * 58.30707 * 17 15 14 19 19 C 1.54058 * 104.75758 * 146.47894 * 18 17 15 20 20 N 1.48232 * 106.70153 * 1.00351 * 19 18 17 21 21 C 1.48803 * 105.17873 * 332.52162 * 20 19 18 22 22 C 1.47680 * 108.91377 * 88.17751 * 20 19 18 23 23 C 1.53638 * 109.89151 * 311.57812 * 22 20 19 24 24 C 1.53161 * 110.60146 * 306.55890 * 23 22 20 25 25 C 1.46926 * 118.74020 * 53.86115 * 14 13 12 26 26 C 1.53034 * 109.44911 * 60.05852 * 11 2 1 27 27 H 1.08998 * 109.47052 * 275.00923 * 1 2 3 28 28 H 1.08997 * 109.46980 * 35.01508 * 1 2 3 29 29 H 1.09005 * 109.46319 * 155.01060 * 1 2 3 30 30 H 0.96995 * 119.99829 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46254 * 180.02562 * 11 2 1 32 32 H 1.08995 * 109.49723 * 61.42299 * 12 11 2 33 33 H 1.09003 * 109.49765 * 301.32107 * 12 11 2 34 34 H 1.08995 * 109.58480 * 185.58351 * 13 12 11 35 35 H 1.09003 * 109.58909 * 65.14782 * 13 12 11 36 36 H 1.09004 * 110.37657 * 265.29589 * 18 17 15 37 37 H 1.09001 * 110.38062 * 27.65507 * 18 17 15 38 38 H 1.09005 * 110.01219 * 241.69446 * 19 18 17 39 39 H 1.09002 * 110.01205 * 120.32066 * 19 18 17 40 40 H 1.08993 * 110.93144 * 160.89301 * 21 20 19 41 41 H 1.08992 * 110.93032 * 284.56239 * 21 20 19 42 42 H 1.09009 * 109.50303 * 72.85677 * 22 20 19 43 43 H 1.08992 * 109.50346 * 192.97457 * 22 20 19 44 44 H 1.08998 * 110.18579 * 185.52022 * 23 22 20 45 45 H 1.09004 * 107.93360 * 66.16038 * 23 22 20 46 46 H 1.08996 * 109.62786 * 292.96017 * 24 23 22 47 47 H 1.08993 * 109.62746 * 172.36959 * 24 23 22 48 48 H 1.09006 * 109.58338 * 65.92947 * 25 14 13 49 49 H 1.09002 * 109.58666 * 186.34631 * 25 14 13 50 50 H 1.08995 * 109.50046 * 298.57549 * 26 11 2 51 51 H 1.09002 * 109.49471 * 58.64224 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.1540 1.2298 -0.3946 5 6 1.5527 2.3320 0.5072 6 7 0.3707 2.2592 1.0817 7 14 2.4269 3.9775 0.3746 8 1 2.0434 4.6405 -0.8977 9 1 2.0364 4.8392 1.5192 10 1 3.8959 3.7608 0.3965 11 6 2.1976 -1.2686 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6212 -3.3818 1.2623 14 7 2.3847 -4.0909 -0.0026 15 6 1.9584 -5.3694 -0.0039 16 8 1.8442 -5.9695 -1.0515 17 6 1.6236 -6.0533 1.2967 18 6 0.5190 -5.3243 2.1032 19 6 -0.2562 -6.4504 2.8135 20 7 0.4029 -7.7238 2.4380 21 6 1.0133 -7.4683 1.1052 22 6 1.4925 -7.9996 3.3959 23 6 2.3606 -6.7448 3.5757 24 6 2.8452 -6.2258 2.2186 25 6 2.6276 -3.3816 -1.2662 26 6 1.8287 -2.0695 -1.2514 27 1 -0.3633 0.0897 1.0237 28 1 -0.3633 0.8416 -0.5897 29 1 -0.3632 -0.9315 -0.4342 30 1 -0.0462 3.0599 1.4364 31 1 3.2693 -1.0691 0.0000 32 1 0.7605 -2.2926 1.2364 33 1 2.0692 -1.4908 2.1391 34 1 2.2898 -4.0011 2.0958 35 1 3.6843 -3.1642 1.3659 36 1 0.9652 -4.6506 2.8348 37 1 -0.1406 -4.7742 1.4321 38 1 -1.2944 -6.4556 2.4814 39 1 -0.2104 -6.3109 3.8936 40 1 1.7899 -8.2009 0.8857 41 1 0.2536 -7.4622 0.3237 42 1 1.0677 -8.3053 4.3522 43 1 2.1259 -8.7968 3.0070 44 1 3.2216 -6.9701 4.2049 45 1 1.7506 -5.9809 4.0578 46 1 3.5378 -6.9432 1.7784 47 1 3.3431 -5.2653 2.3505 48 1 3.6912 -3.1641 -1.3645 49 1 2.3005 -4.0008 -2.1015 50 1 0.7615 -2.2906 -1.2402 51 1 2.0704 -1.4872 -2.1405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985768835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:22 Heat of formation + Delta-G solvation = -9.911363 kcal Electronic energy + Delta-G solvation = -29590.542113 eV Core-core repulsion = 25910.862398 eV Total energy + Delta-G solvation = -3679.679715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.55830 -40.44626 -38.86590 -36.76093 -34.30065 -33.40863 -33.02962 -31.72478 -31.34002 -30.23501 -28.04160 -26.74464 -25.61345 -24.77397 -24.03004 -23.45416 -22.17301 -21.36989 -20.50668 -19.65195 -18.78549 -17.96183 -17.38177 -17.11100 -16.97736 -16.36554 -15.94198 -15.64318 -15.26967 -15.16278 -14.95459 -14.89016 -14.62357 -14.13211 -14.04373 -13.90842 -13.70259 -13.60655 -13.52911 -13.20590 -13.11675 -12.74817 -12.72488 -12.63179 -12.44300 -12.38615 -12.22399 -12.06749 -11.98186 -11.83905 -11.80163 -11.68059 -11.53648 -11.39063 -11.16362 -10.69016 -10.61272 -9.69739 -9.51631 -8.73567 -7.80394 -5.31097 1.47178 1.47978 1.50566 1.56588 1.95028 2.50779 2.92639 3.32076 3.35561 3.51063 3.60505 3.67125 3.78505 3.93422 4.01597 4.06383 4.11250 4.14903 4.16534 4.28931 4.35501 4.38716 4.45164 4.52895 4.59452 4.62531 4.65215 4.74459 4.80331 4.82463 4.89211 4.90374 4.94816 4.96885 4.99390 5.05494 5.09783 5.12454 5.17559 5.25982 5.29114 5.37815 5.48924 5.58287 5.67187 5.74310 5.75721 5.99850 6.35171 6.38707 7.08988 7.17929 7.89516 8.34784 9.22218 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.003284 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.297452 B = 8524.009426 C = 8942.432056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.612 5.612 3 C -0.262 4.262 4 H 0.071 0.929 5 C -0.050 4.050 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.295 1.295 10 H -0.267 1.267 11 C 0.175 3.825 12 C -0.133 4.133 13 C 0.105 3.895 14 N -0.601 5.601 15 C 0.535 3.465 16 O -0.582 6.582 17 C -0.114 4.114 18 C -0.134 4.134 19 C 0.032 3.968 20 N -0.502 5.502 21 C 0.061 3.939 22 C 0.029 3.971 23 C -0.149 4.149 24 C -0.110 4.110 25 C 0.121 3.879 26 C -0.132 4.132 27 H 0.004 0.996 28 H 0.011 0.989 29 H 0.017 0.983 30 H 0.246 0.754 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.046 0.954 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 -19.606 6.553 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.335 5.335 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.245 4.245 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.191 1.191 11 C 0.068 3.932 12 C -0.173 4.173 13 C -0.017 4.017 14 N -0.332 5.332 15 C 0.324 3.676 16 O -0.462 6.462 17 C -0.119 4.119 18 C -0.173 4.173 19 C -0.096 4.096 20 N -0.223 5.223 21 C -0.068 4.068 22 C -0.099 4.099 23 C -0.187 4.187 24 C -0.148 4.148 25 C -0.002 4.002 26 C -0.172 4.172 27 H 0.022 0.978 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.065 0.935 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.406 -20.278 6.095 21.628 hybrid contribution 0.456 2.255 -0.412 2.337 sum 4.863 -18.024 5.683 19.514 Atomic orbital electron populations 1.20395 0.83327 0.94837 0.97247 1.44138 1.01737 1.01346 1.86235 1.19576 0.99356 0.87299 1.32940 0.91096 1.25822 0.98087 1.01861 0.98758 1.70220 1.17218 1.27849 1.43350 0.85269 0.78664 0.79976 0.76526 1.21706 1.22196 1.19132 1.20493 0.95427 0.84679 0.92615 1.22288 0.99733 0.95658 0.99592 1.22277 1.00792 0.92904 0.85761 1.48161 1.65213 1.11756 1.08079 1.20485 0.75360 0.81197 0.90546 1.90646 1.55261 1.65414 1.34907 1.22530 0.99088 0.97567 0.92708 1.23043 0.96233 0.98917 0.99065 1.23103 0.98728 0.86678 1.01095 1.66449 1.23461 1.30269 1.02085 1.23245 0.98106 0.92795 0.92692 1.22816 0.92147 0.97546 0.97391 1.22318 1.01276 0.98968 0.96169 1.22022 0.94806 1.03008 0.94957 1.21632 1.00211 0.92067 0.86264 1.22351 0.99518 0.95569 0.99797 0.97760 0.97031 0.96482 0.94431 0.91929 0.93331 0.91814 0.86850 0.89697 0.88698 0.92628 0.90454 0.88647 0.89704 0.91428 0.88711 0.90546 0.88881 0.90804 0.91062 0.89710 0.89913 0.90269 0.93541 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.28 8.01 127.77 1.02 10.31 16 2 N -0.61 -29.64 2.81 -702.61 -1.98 -31.62 16 3 C -0.26 -13.96 9.59 84.03 0.81 -13.16 16 4 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 5 C -0.05 -2.77 5.24 84.86 0.45 -2.32 16 6 N -0.94 -54.79 10.44 21.65 0.23 -54.56 16 7 Si 0.97 44.29 29.56 68.60 2.03 46.32 16 8 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 9 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 C 0.17 6.55 2.55 45.02 0.11 6.66 16 12 C -0.13 -4.21 5.34 30.68 0.16 -4.04 16 13 C 0.10 2.43 4.76 86.36 0.41 2.84 16 14 N -0.60 -15.90 2.97 -818.05 -2.43 -18.32 16 15 C 0.54 14.88 6.75 87.66 0.59 15.47 16 16 O -0.58 -20.31 15.64 -3.01 -0.05 -20.36 16 17 C -0.11 -2.37 0.66 -51.12 -0.03 -2.40 16 18 C -0.13 -2.58 4.41 31.63 0.14 -2.44 16 19 C 0.03 0.55 6.21 86.40 0.54 1.08 16 20 N -0.50 -9.08 6.06 -877.11 -5.32 -14.40 16 21 C 0.06 1.31 5.42 86.72 0.47 1.78 16 22 C 0.03 0.38 5.83 86.37 0.50 0.88 16 23 C -0.15 -1.69 5.59 30.86 0.17 -1.52 16 24 C -0.11 -1.69 4.69 30.99 0.15 -1.55 16 25 C 0.12 3.43 6.45 86.51 0.56 3.98 16 26 C -0.13 -4.43 5.34 30.82 0.16 -4.27 16 27 H 0.00 0.22 7.35 -2.39 -0.02 0.21 16 28 H 0.01 0.61 7.25 -2.39 -0.02 0.59 16 29 H 0.02 0.75 6.47 -2.38 -0.02 0.73 16 30 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.06 2.34 7.88 -2.38 -0.02 2.32 16 32 H 0.05 1.66 7.72 -2.39 -0.02 1.64 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.11 2.14 2.52 -2.39 -0.01 2.13 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.59 5.34 -2.38 -0.01 1.58 16 37 H 0.05 1.32 8.00 -2.39 -0.02 1.30 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.10 1.26 7.00 -2.39 -0.02 1.24 16 40 H 0.08 1.76 7.68 -2.39 -0.02 1.74 16 41 H 0.07 1.75 7.99 -2.39 -0.02 1.73 16 42 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.08 0.95 7.87 -2.39 -0.02 0.93 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.82 5.47 -2.38 -0.01 0.81 16 46 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 47 H 0.08 1.22 5.42 -2.39 -0.01 1.21 16 48 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.08 2.39 7.03 -2.39 -0.02 2.37 16 50 H 0.05 1.68 6.72 -2.39 -0.02 1.67 16 51 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -66.02 364.52 -0.39 -66.41 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.92 Total: 15.21 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.21 Total: 11.31 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -9.50 Total: -118.89 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.02 -0.39 -66.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985768835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.501 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds