Wall clock time and date at job start Fri Apr 10 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48504 * 109.46635 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47096 * 299.99892 * 3 2 1 6 6 H 1.48502 * 109.47230 * 60.00157 * 3 2 1 7 7 C 1.38810 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 189.92172 * 7 2 1 9 9 N 1.36936 * 119.99773 * 9.92230 * 7 2 1 10 10 C 1.46863 * 120.47079 * 211.39656 * 9 7 2 11 11 C 1.52868 * 109.14689 * 232.51944 * 10 9 7 12 12 C 1.52892 * 109.18199 * 306.06387 * 11 10 9 13 13 H 1.08996 * 109.52869 * 301.99966 * 12 11 10 14 14 C 1.53276 * 109.16031 * 61.91798 * 12 11 10 15 15 H 1.08999 * 109.46957 * 56.66288 * 14 12 11 16 16 C 1.52823 * 109.16465 * 176.47926 * 14 12 11 17 17 C 1.53143 * 109.26712 * 298.18824 * 16 14 12 18 18 C 1.53133 * 109.61328 * 60.85485 * 17 16 14 19 19 N 1.46707 * 110.46847 * 181.26661 * 12 11 10 20 20 C 1.34773 * 120.84814 * 5.93096 * 19 12 11 21 21 O 1.21287 * 120.00025 * 5.14662 * 20 19 12 22 22 C 1.50702 * 120.00437 * 185.14393 * 20 19 12 23 23 N 1.46903 * 109.47192 * 180.02562 * 22 20 19 24 24 C 1.48530 * 110.99983 * 52.60610 * 23 22 20 25 25 C 1.54937 * 103.22609 * 159.72368 * 24 23 22 26 26 C 1.54592 * 102.91951 * 322.58223 * 25 24 23 27 27 C 1.47896 * 110.99743 * 170.00363 * 23 22 20 28 28 C 1.47070 * 120.46879 * 31.38142 * 9 7 2 29 29 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.53128 * 352.51556 * 10 9 7 31 31 H 1.08997 * 109.53119 * 112.66268 * 10 9 7 32 32 H 1.09009 * 109.60368 * 186.05728 * 11 10 9 33 33 H 1.09000 * 109.27461 * 65.88199 * 11 10 9 34 34 H 1.08993 * 109.50677 * 58.13064 * 16 14 12 35 35 H 1.09000 * 109.50204 * 178.21330 * 16 14 12 36 36 H 1.09003 * 109.44550 * 180.89429 * 17 16 14 37 37 H 1.08993 * 109.44835 * 300.83786 * 17 16 14 38 38 H 1.08998 * 109.54243 * 65.86652 * 18 17 16 39 39 H 1.09008 * 109.53868 * 186.03861 * 18 17 16 40 40 H 1.08994 * 109.47237 * 300.00408 * 22 20 19 41 41 H 1.09005 * 109.46634 * 60.00474 * 22 20 19 42 42 H 1.09007 * 110.66749 * 278.15164 * 24 23 22 43 43 H 1.08997 * 110.66727 * 41.28606 * 24 23 22 44 44 H 1.09000 * 110.72066 * 204.22886 * 25 24 23 45 45 H 1.08990 * 110.88205 * 81.01476 * 25 24 23 46 46 H 1.09005 * 110.31189 * 263.04190 * 26 25 24 47 47 H 1.09001 * 110.30958 * 140.87532 * 26 25 24 48 48 H 1.08996 * 109.91802 * 333.50714 * 27 23 22 49 49 H 1.09005 * 109.92004 * 94.80675 * 27 23 22 50 50 H 1.08998 * 109.69292 * 6.98632 * 28 9 7 51 51 H 1.09003 * 109.68963 * 246.40962 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0782 -1.2091 0.1617 9 7 1.3410 -2.3792 -0.2033 10 6 1.8073 -3.6202 0.4288 11 6 1.9631 -4.7003 -0.6417 12 6 0.6518 -4.8323 -1.4167 13 1 -0.1565 -5.0746 -0.7267 14 6 0.3460 -3.5042 -2.1181 15 1 1.1823 -3.2325 -2.7622 16 6 -0.9175 -3.6623 -2.9631 17 6 -0.6771 -4.7271 -4.0372 18 6 -0.3588 -6.0680 -3.3696 19 7 0.7605 -5.8843 -2.4335 20 6 1.8584 -6.6624 -2.5082 21 8 2.7315 -6.5610 -1.6725 22 6 2.0012 -7.6585 -3.6301 23 7 3.2744 -8.3773 -3.4876 24 6 3.4085 -8.9577 -2.1269 25 6 4.4751 -10.0652 -2.3176 26 6 4.1347 -10.6365 -3.7131 27 6 3.3447 -9.5210 -4.4226 28 6 0.1448 -2.4186 -1.0580 29 1 -0.4850 0.8401 0.0004 30 1 2.7678 -3.4439 0.9129 31 1 1.0793 -3.9467 1.1714 32 1 2.2047 -5.6521 -0.1685 33 1 2.7638 -4.4169 -1.3248 34 1 -1.7460 -3.9695 -2.3250 35 1 -1.1580 -2.7119 -3.4395 36 1 -1.5713 -4.8310 -4.6518 37 1 0.1617 -4.4265 -4.6649 38 1 -1.2347 -6.4215 -2.8256 39 1 -0.0832 -6.7979 -4.1308 40 1 1.1763 -8.3699 -3.5915 41 1 1.9845 -7.1342 -4.5857 42 1 3.7578 -8.2048 -1.4202 43 1 2.4626 -9.3872 -1.7970 44 1 4.3744 -10.8336 -1.5511 45 1 5.4798 -9.6427 -2.3084 46 1 3.5206 -11.5318 -3.6159 47 1 5.0485 -10.8614 -4.2631 48 1 2.3395 -9.8702 -4.6584 49 1 3.8610 -9.2233 -5.3353 50 1 0.0081 -1.4522 -1.5432 51 1 -0.7311 -2.6537 -0.4533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021738002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:30 Heat of formation + Delta-G solvation = 10.166142 kcal Electronic energy + Delta-G solvation = -29235.438837 eV Core-core repulsion = 25556.629748 eV Total energy + Delta-G solvation = -3678.809089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.60799 -38.91670 -37.30772 -35.81798 -32.99465 -32.79723 -32.07770 -30.20531 -29.20532 -28.92465 -26.86270 -25.52442 -24.37977 -22.49741 -22.33799 -21.37227 -20.96624 -20.18017 -19.34747 -18.75180 -16.79393 -16.66324 -16.30604 -15.72138 -15.46807 -15.19168 -14.75600 -14.30962 -14.12168 -14.07172 -13.78593 -13.43084 -13.24770 -12.97826 -12.93847 -12.54619 -12.34192 -12.25869 -12.09373 -12.03247 -11.66956 -11.48558 -11.40185 -11.04804 -10.92809 -10.92409 -10.81014 -10.74173 -10.70830 -10.61502 -10.18879 -9.96519 -9.93878 -9.74131 -9.40808 -8.76313 -8.47615 -8.34626 -8.19397 -6.52491 -5.72917 -3.20075 2.79664 3.07735 3.39959 3.47443 3.50492 3.90334 4.42814 4.50899 4.53585 4.72092 4.76576 4.84995 5.02412 5.07358 5.14938 5.15893 5.23606 5.36853 5.38842 5.46038 5.50833 5.51576 5.59383 5.61425 5.69129 5.70729 5.76554 5.85913 5.94660 5.99682 6.03181 6.13724 6.22894 6.28885 6.39325 6.45630 6.50700 6.61302 6.69459 6.77085 6.81086 6.85957 7.02004 7.10897 7.24906 7.41693 7.69850 7.72760 7.85534 8.46352 8.54691 9.28664 9.90434 10.48175 11.34802 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003374 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.700418 B = 8296.556061 C = 9171.341514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.064 0.936 9 N -0.595 5.595 10 C 0.139 3.861 11 C -0.120 4.120 12 C 0.159 3.841 13 H 0.062 0.938 14 C -0.121 4.121 15 H 0.065 0.935 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.109 3.891 19 N -0.608 5.608 20 C 0.513 3.487 21 O -0.514 6.514 22 C 0.027 3.973 23 N -0.501 5.501 24 C 0.032 3.968 25 C -0.126 4.126 26 C -0.131 4.131 27 C 0.034 3.966 28 C 0.183 3.817 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 -19.848 -10.317 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.159 4.159 12 C 0.057 3.943 13 H 0.080 0.920 14 C -0.142 4.142 15 H 0.084 0.916 16 C -0.150 4.150 17 C -0.171 4.171 18 C -0.015 4.015 19 N -0.342 5.342 20 C 0.300 3.700 21 O -0.391 6.391 22 C -0.105 4.105 23 N -0.225 5.225 24 C -0.095 4.095 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.094 4.094 28 C 0.057 3.943 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.109 0.891 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.384 -19.262 -9.951 21.684 hybrid contribution -0.573 0.351 -0.132 0.685 sum -0.189 -18.911 -10.083 21.432 Atomic orbital electron populations 1.69974 1.05192 1.25187 1.54925 1.25153 0.95436 0.98296 1.00746 0.86199 0.79377 0.83917 0.77194 1.20239 1.21659 1.21696 1.19264 0.90824 0.83926 1.43641 0.91824 1.44093 1.31020 1.03942 1.52651 1.21049 0.97587 0.87001 0.93084 1.22424 0.94898 0.99825 0.98724 1.21295 0.99285 0.85608 0.88076 0.91969 1.22287 0.96850 0.96300 0.98770 0.91617 1.21479 0.98421 0.98290 0.96799 1.21915 1.01596 0.95164 0.98465 1.21705 0.89628 0.97900 0.92245 1.48311 1.17141 1.34883 1.33832 1.20314 0.81649 0.81753 0.86252 1.90670 1.40563 1.67584 1.40240 1.22313 0.91949 0.96873 0.99317 1.64666 1.30618 1.22405 1.04846 1.23529 0.97315 0.96880 0.91771 1.22527 1.00117 0.97695 0.96103 1.22395 1.00260 0.97481 0.96785 1.22931 0.99164 0.90401 0.96879 1.20776 0.88112 0.96272 0.89137 0.93768 0.92709 0.96964 0.89961 0.91933 0.92164 0.91566 0.91238 0.91699 0.91546 0.90620 0.92410 0.88121 0.86677 0.94702 0.91315 0.90690 0.91737 0.91078 0.93970 0.90288 0.89052 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.41 11.00 55.49 0.61 -25.80 16 2 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 3 Si 0.90 22.10 29.57 -169.99 -5.03 17.08 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -6.96 9.57 -15.06 -0.14 -7.11 16 8 H 0.06 1.79 7.85 -52.49 -0.41 1.38 16 9 N -0.59 -15.38 2.99 -172.53 -0.52 -15.89 16 10 C 0.14 3.15 6.49 -3.91 -0.03 3.13 16 11 C -0.12 -2.39 3.79 -26.85 -0.10 -2.49 16 12 C 0.16 2.83 2.64 -67.73 -0.18 2.66 16 13 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.12 -2.29 2.21 -90.54 -0.20 -2.49 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 16 C -0.11 -1.68 5.24 -26.75 -0.14 -1.82 16 17 C -0.13 -1.53 6.07 -26.59 -0.16 -1.70 16 18 C 0.11 1.18 6.34 -3.67 -0.02 1.16 16 19 N -0.61 -8.87 2.97 -165.32 -0.49 -9.36 16 20 C 0.51 7.68 7.30 -10.99 -0.08 7.59 16 21 O -0.51 -9.22 9.21 5.55 0.05 -9.17 16 22 C 0.03 0.31 3.88 -4.97 -0.02 0.29 16 23 N -0.50 -6.08 5.26 -231.89 -1.22 -7.30 16 24 C 0.03 0.39 5.30 -1.90 -0.01 0.38 16 25 C -0.13 -1.22 7.06 -24.87 -0.18 -1.39 16 26 C -0.13 -1.07 6.93 -25.37 -0.18 -1.25 16 27 C 0.03 0.31 6.70 -2.75 -0.02 0.30 16 28 C 0.18 4.36 4.57 -3.70 -0.02 4.34 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 1.63 6.13 -51.92 -0.32 1.31 16 33 H 0.06 1.39 7.47 -51.93 -0.39 1.00 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.63 5.97 -51.92 -0.31 0.32 16 40 H 0.06 0.55 7.41 -51.93 -0.39 0.17 16 41 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 42 H 0.12 1.72 5.97 -51.92 -0.31 1.41 16 43 H 0.03 0.42 8.02 -51.93 -0.42 0.00 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.04 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 2.44 6.10 -51.93 -0.32 2.12 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -31.15 372.08 -11.67 -42.82 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -9.13 Total: 0.46 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.56 Total: 1.56 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -1.62 Total: -58.36 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.05 Total: -9.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.15 -11.67 -42.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021738002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.989 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds