Wall clock time and date at job start Fri Apr 10 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48504 * 109.46635 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47096 * 299.99892 * 3 2 1 6 6 H 1.48502 * 109.47230 * 60.00157 * 3 2 1 7 7 C 1.38810 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00362 * 189.92172 * 7 2 1 9 9 N 1.36936 * 119.99773 * 9.92230 * 7 2 1 10 10 C 1.46863 * 120.47079 * 211.39656 * 9 7 2 11 11 C 1.52868 * 109.14689 * 232.51944 * 10 9 7 12 12 C 1.52892 * 109.18199 * 306.06387 * 11 10 9 13 13 H 1.08996 * 109.52869 * 301.99966 * 12 11 10 14 14 C 1.53276 * 109.16031 * 61.91798 * 12 11 10 15 15 H 1.08999 * 109.46957 * 56.66288 * 14 12 11 16 16 C 1.52823 * 109.16465 * 176.47926 * 14 12 11 17 17 C 1.53143 * 109.26712 * 298.18824 * 16 14 12 18 18 C 1.53133 * 109.61328 * 60.85485 * 17 16 14 19 19 N 1.46707 * 110.46847 * 181.26661 * 12 11 10 20 20 C 1.34773 * 120.84814 * 5.93096 * 19 12 11 21 21 O 1.21287 * 120.00025 * 5.14662 * 20 19 12 22 22 C 1.50702 * 120.00437 * 185.14393 * 20 19 12 23 23 N 1.46903 * 109.47192 * 180.02562 * 22 20 19 24 24 C 1.48530 * 110.99983 * 52.60610 * 23 22 20 25 25 C 1.54937 * 103.22609 * 159.72368 * 24 23 22 26 26 C 1.54592 * 102.91951 * 322.58223 * 25 24 23 27 27 C 1.47896 * 110.99743 * 170.00363 * 23 22 20 28 28 C 1.47070 * 120.46879 * 31.38142 * 9 7 2 29 29 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.53128 * 352.51556 * 10 9 7 31 31 H 1.08997 * 109.53119 * 112.66268 * 10 9 7 32 32 H 1.09009 * 109.60368 * 186.05728 * 11 10 9 33 33 H 1.09000 * 109.27461 * 65.88199 * 11 10 9 34 34 H 1.08993 * 109.50677 * 58.13064 * 16 14 12 35 35 H 1.09000 * 109.50204 * 178.21330 * 16 14 12 36 36 H 1.09003 * 109.44550 * 180.89429 * 17 16 14 37 37 H 1.08993 * 109.44835 * 300.83786 * 17 16 14 38 38 H 1.08998 * 109.54243 * 65.86652 * 18 17 16 39 39 H 1.09008 * 109.53868 * 186.03861 * 18 17 16 40 40 H 1.08994 * 109.47237 * 300.00408 * 22 20 19 41 41 H 1.09005 * 109.46634 * 60.00474 * 22 20 19 42 42 H 1.09007 * 110.66749 * 278.15164 * 24 23 22 43 43 H 1.08997 * 110.66727 * 41.28606 * 24 23 22 44 44 H 1.09000 * 110.72066 * 204.22886 * 25 24 23 45 45 H 1.08990 * 110.88205 * 81.01476 * 25 24 23 46 46 H 1.09005 * 110.31189 * 263.04190 * 26 25 24 47 47 H 1.09001 * 110.30958 * 140.87532 * 26 25 24 48 48 H 1.08996 * 109.91802 * 333.50714 * 27 23 22 49 49 H 1.09005 * 109.92004 * 94.80675 * 27 23 22 50 50 H 1.08998 * 109.69292 * 6.98632 * 28 9 7 51 51 H 1.09003 * 109.68963 * 246.40962 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0782 -1.2091 0.1617 9 7 1.3410 -2.3792 -0.2033 10 6 1.8073 -3.6202 0.4288 11 6 1.9631 -4.7003 -0.6417 12 6 0.6518 -4.8323 -1.4167 13 1 -0.1565 -5.0746 -0.7267 14 6 0.3460 -3.5042 -2.1181 15 1 1.1823 -3.2325 -2.7622 16 6 -0.9175 -3.6623 -2.9631 17 6 -0.6771 -4.7271 -4.0372 18 6 -0.3588 -6.0680 -3.3696 19 7 0.7605 -5.8843 -2.4335 20 6 1.8584 -6.6624 -2.5082 21 8 2.7315 -6.5610 -1.6725 22 6 2.0012 -7.6585 -3.6301 23 7 3.2744 -8.3773 -3.4876 24 6 3.4085 -8.9577 -2.1269 25 6 4.4751 -10.0652 -2.3176 26 6 4.1347 -10.6365 -3.7131 27 6 3.3447 -9.5210 -4.4226 28 6 0.1448 -2.4186 -1.0580 29 1 -0.4850 0.8401 0.0004 30 1 2.7678 -3.4439 0.9129 31 1 1.0793 -3.9467 1.1714 32 1 2.2047 -5.6521 -0.1685 33 1 2.7638 -4.4169 -1.3248 34 1 -1.7460 -3.9695 -2.3250 35 1 -1.1580 -2.7119 -3.4395 36 1 -1.5713 -4.8310 -4.6518 37 1 0.1617 -4.4265 -4.6649 38 1 -1.2347 -6.4215 -2.8256 39 1 -0.0832 -6.7979 -4.1308 40 1 1.1763 -8.3699 -3.5915 41 1 1.9845 -7.1342 -4.5857 42 1 3.7578 -8.2048 -1.4202 43 1 2.4626 -9.3872 -1.7970 44 1 4.3744 -10.8336 -1.5511 45 1 5.4798 -9.6427 -2.3084 46 1 3.5206 -11.5318 -3.6159 47 1 5.0485 -10.8614 -4.2631 48 1 2.3395 -9.8702 -4.6584 49 1 3.8610 -9.2233 -5.3353 50 1 0.0081 -1.4522 -1.5432 51 1 -0.7311 -2.6537 -0.4533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021738002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:28 Heat of formation + Delta-G solvation = -9.661855 kcal Electronic energy + Delta-G solvation = -29236.298643 eV Core-core repulsion = 25556.629748 eV Total energy + Delta-G solvation = -3679.668895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.81965 -39.96825 -38.57251 -37.33979 -34.64714 -34.12653 -33.21267 -31.85723 -30.83474 -29.69066 -28.03172 -27.13163 -25.80226 -24.05842 -23.86397 -22.30404 -21.69434 -21.50777 -21.08152 -19.88725 -18.72787 -17.79923 -17.36709 -16.87489 -16.68211 -16.51872 -16.19522 -15.62306 -15.49875 -15.25323 -15.11832 -14.98605 -14.55194 -14.31184 -13.96826 -13.92682 -13.73156 -13.56350 -13.17504 -13.14345 -13.04382 -12.81697 -12.64329 -12.55380 -12.45200 -12.17851 -12.13103 -12.06550 -12.02442 -11.86707 -11.68770 -11.59444 -11.45349 -11.39713 -11.03251 -10.60544 -9.96705 -9.49485 -9.29572 -8.61338 -7.88516 -5.40585 1.43114 1.43989 1.55530 1.67204 1.97248 2.47816 3.07284 3.25090 3.47679 3.62174 3.78182 3.87780 3.89270 3.95663 4.04800 4.11447 4.14208 4.27243 4.29996 4.35548 4.37113 4.42587 4.49803 4.62006 4.67650 4.69392 4.76914 4.79264 4.86163 4.91309 4.95234 4.97358 5.01675 5.01992 5.12286 5.15679 5.18673 5.27563 5.32424 5.35837 5.39341 5.44607 5.52217 5.62069 5.70495 5.77546 5.93107 6.02717 6.39287 6.57931 7.13766 7.32125 7.82219 8.34972 9.16104 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003374 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.700418 B = 8296.556061 C = 9171.341514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.267 4.267 8 H 0.056 0.944 9 N -0.614 5.614 10 C 0.137 3.863 11 C -0.097 4.097 12 C 0.168 3.832 13 H 0.062 0.938 14 C -0.107 4.107 15 H 0.040 0.960 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.104 3.896 19 N -0.608 5.608 20 C 0.503 3.497 21 O -0.553 6.553 22 C 0.036 3.964 23 N -0.526 5.526 24 C 0.034 3.966 25 C -0.125 4.125 26 C -0.126 4.126 27 C 0.034 3.966 28 C 0.193 3.807 29 H 0.252 0.748 30 H 0.044 0.956 31 H 0.013 0.987 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.058 0.942 51 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -22.210 -12.753 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.398 4.398 8 H 0.074 0.926 9 N -0.338 5.338 10 C 0.011 3.989 11 C -0.136 4.136 12 C 0.064 3.936 13 H 0.080 0.920 14 C -0.128 4.128 15 H 0.059 0.941 16 C -0.147 4.147 17 C -0.162 4.162 18 C -0.018 4.018 19 N -0.342 5.342 20 C 0.292 3.708 21 O -0.431 6.431 22 C -0.094 4.094 23 N -0.252 5.252 24 C -0.093 4.093 25 C -0.163 4.163 26 C -0.164 4.164 27 C -0.093 4.093 28 C 0.067 3.933 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.102 0.898 50 H 0.076 0.924 51 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -0.528 -21.660 -12.420 24.974 hybrid contribution -0.274 1.086 0.679 1.309 sum -0.802 -20.575 -11.741 23.703 Atomic orbital electron populations 1.70128 1.06410 1.25812 1.55464 1.25887 0.96319 1.01322 1.00581 0.85180 0.78336 0.79676 0.77105 1.19636 1.21171 1.21407 1.19493 0.90861 0.85358 1.44058 0.92633 1.44367 1.31398 1.04256 1.53734 1.21140 0.96864 0.86876 0.93973 1.22129 0.95465 0.98464 0.97521 1.20910 0.97547 0.86353 0.88781 0.91996 1.21996 0.98219 0.95209 0.97351 0.94095 1.21462 0.96125 0.99732 0.97422 1.21881 1.03127 0.93936 0.97300 1.22055 0.88871 0.98390 0.92461 1.48328 1.18499 1.33667 1.33666 1.21099 0.80873 0.82036 0.86774 1.90664 1.41799 1.68774 1.41911 1.22296 0.92848 0.96392 0.97905 1.64619 1.31387 1.24017 1.05144 1.23345 0.97944 0.96548 0.91488 1.22507 0.98720 0.97263 0.97832 1.22403 1.00929 0.97684 0.95387 1.23006 1.00474 0.89571 0.96292 1.20575 0.86804 0.96390 0.89558 0.93901 0.93689 0.96945 0.89599 0.94632 0.91449 0.92288 0.87529 0.92258 0.89823 0.86841 0.89434 0.86345 0.90358 0.94568 0.90122 0.91804 0.90096 0.90178 0.92083 0.89785 0.92374 0.98237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 11.00 21.65 0.24 -55.79 16 2 C -0.05 -2.64 5.06 84.86 0.43 -2.21 16 3 Si 0.97 46.55 29.57 68.60 2.03 48.58 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.27 -15.76 9.57 84.03 0.80 -14.95 16 8 H 0.06 3.28 7.85 -2.91 -0.02 3.26 16 9 N -0.61 -33.39 2.99 -699.78 -2.10 -35.49 16 10 C 0.14 6.55 6.49 86.27 0.56 7.11 16 11 C -0.10 -4.03 3.79 30.51 0.12 -3.91 16 12 C 0.17 5.99 2.64 45.01 0.12 6.11 16 13 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.11 -4.13 2.21 -10.74 -0.02 -4.15 16 15 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 16 C -0.11 -3.15 5.24 30.58 0.16 -2.99 16 17 C -0.12 -2.43 6.07 30.69 0.19 -2.24 16 18 C 0.10 1.82 6.34 86.32 0.55 2.37 16 19 N -0.61 -16.67 2.97 -795.35 -2.36 -19.03 16 20 C 0.50 14.38 7.30 87.66 0.64 15.02 16 21 O -0.55 -20.18 9.21 -3.05 -0.03 -20.21 16 22 C 0.04 0.71 3.88 85.56 0.33 1.04 16 23 N -0.53 -11.67 5.26 -887.57 -4.67 -16.34 16 24 C 0.03 0.81 5.30 86.65 0.46 1.26 16 25 C -0.13 -2.25 7.06 31.80 0.22 -2.02 16 26 C -0.13 -1.69 6.93 31.47 0.22 -1.47 16 27 C 0.03 0.50 6.70 86.45 0.58 1.08 16 28 C 0.19 9.60 4.57 86.29 0.39 10.00 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.04 2.17 7.93 -2.39 -0.02 2.15 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 3.53 6.13 -2.38 -0.01 3.52 16 33 H 0.03 1.65 7.47 -2.39 -0.02 1.64 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.11 1.22 5.97 -2.38 -0.01 1.20 16 40 H 0.09 1.22 7.41 -2.39 -0.02 1.20 16 41 H 0.12 1.93 7.91 -2.38 -0.02 1.91 16 42 H 0.08 2.44 5.97 -2.38 -0.01 2.42 16 43 H 0.04 0.82 8.02 -2.39 -0.02 0.80 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.69 7.57 -2.39 -0.02 0.67 16 49 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.06 3.27 6.10 -2.39 -0.01 3.25 16 51 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -72.50 372.08 -0.26 -72.76 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.89 Total: 15.49 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.74 Total: 10.03 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -8.89 Total: -126.65 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.03 Total: -20.21 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -72.50 -0.26 -72.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021738002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.098 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds