Wall clock time and date at job start Fri Apr 10 2020 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00416 * 2 1 4 4 H 1.48503 * 109.47055 * 269.99901 * 3 2 1 5 5 H 1.48499 * 109.46931 * 29.99517 * 3 2 1 6 6 H 1.48490 * 109.47506 * 149.99689 * 3 2 1 7 7 C 1.38814 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99889 * 163.15086 * 7 2 1 9 9 N 1.36937 * 120.00042 * 343.14700 * 7 2 1 10 10 C 1.46968 * 120.77261 * 151.96382 * 9 7 2 11 11 C 1.53093 * 108.62275 * 125.66776 * 10 9 7 12 12 C 1.53160 * 109.57667 * 55.34591 * 11 10 9 13 13 H 1.08998 * 110.06299 * 60.59302 * 12 11 10 14 14 C 1.53144 * 109.59274 * 299.41562 * 12 11 10 15 15 H 1.08995 * 109.25207 * 179.59577 * 14 12 11 16 16 C 1.52853 * 109.36723 * 298.32941 * 14 12 11 17 17 C 1.53109 * 109.35070 * 297.98122 * 16 14 12 18 18 C 1.53143 * 109.47740 * 60.64767 * 17 16 14 19 19 N 1.46947 * 109.02575 * 305.92363 * 18 17 16 20 20 C 1.34770 * 120.84806 * 234.00328 * 19 18 17 21 21 O 1.21277 * 119.99764 * 180.02562 * 20 19 18 22 22 C 1.50695 * 120.00110 * 0.02562 * 20 19 18 23 23 N 1.46906 * 109.47478 * 180.02562 * 22 20 19 24 24 C 1.48532 * 110.99556 * 52.60381 * 23 22 20 25 25 C 1.54940 * 103.22194 * 159.72476 * 24 23 22 26 26 C 1.54593 * 102.92031 * 322.58153 * 25 24 23 27 27 C 1.47901 * 111.00188 * 169.99961 * 23 22 20 28 28 C 1.46890 * 120.77074 * 331.93582 * 9 7 2 29 29 H 0.97004 * 119.99483 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.60997 * 5.91815 * 10 9 7 31 31 H 1.09002 * 109.74975 * 245.49165 * 10 9 7 32 32 H 1.09003 * 109.45220 * 295.31264 * 11 10 9 33 33 H 1.08996 * 109.45295 * 175.38060 * 11 10 9 34 34 H 1.09007 * 109.49447 * 57.94541 * 16 14 12 35 35 H 1.08997 * 109.49042 * 178.01888 * 16 14 12 36 36 H 1.09006 * 109.47015 * 300.64811 * 17 16 14 37 37 H 1.09001 * 109.47090 * 180.65214 * 17 16 14 38 38 H 1.09004 * 109.54512 * 186.06175 * 18 17 16 39 39 H 1.08998 * 109.54674 * 65.79155 * 18 17 16 40 40 H 1.09005 * 109.47579 * 300.00050 * 22 20 19 41 41 H 1.08998 * 109.47433 * 60.00012 * 22 20 19 42 42 H 1.08995 * 110.66825 * 278.15503 * 24 23 22 43 43 H 1.09002 * 110.67015 * 41.28876 * 24 23 22 44 44 H 1.09009 * 110.71759 * 204.22810 * 25 24 23 45 45 H 1.08994 * 110.87627 * 81.01760 * 25 24 23 46 46 H 1.09001 * 110.31271 * 263.04273 * 26 25 24 47 47 H 1.09006 * 110.38831 * 140.92259 * 26 25 24 48 48 H 1.09001 * 109.91523 * 333.51287 * 27 23 22 49 49 H 1.09001 * 109.91352 * 94.60567 * 27 23 22 50 50 H 1.08999 * 109.52166 * 113.44020 * 28 9 7 51 51 H 1.08999 * 109.52059 * 353.26913 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2224 -0.2706 9 7 1.3696 -2.3625 0.3449 10 6 1.8133 -3.6552 -0.1954 11 6 2.0788 -4.6081 0.9730 12 6 0.8269 -4.7065 1.8498 13 1 -0.0084 -5.0945 1.2668 14 6 0.4805 -3.3229 2.4076 15 1 -0.4149 -3.3980 3.0245 16 6 1.6329 -2.8250 3.2797 17 6 1.8208 -3.7769 4.4640 18 6 2.1578 -5.1777 3.9448 19 7 1.1247 -5.5948 2.9866 20 6 0.4668 -6.7604 3.1436 21 8 -0.3828 -7.0898 2.3432 22 6 0.7867 -7.6546 4.3137 23 7 -0.0595 -8.8542 4.2591 24 6 0.0395 -9.5154 2.9327 25 6 -0.4469 -10.9583 3.2188 26 6 0.1338 -11.2471 4.6221 27 6 0.3852 -9.8619 5.2461 28 6 0.2233 -2.3439 1.2633 29 1 -0.4849 0.8401 -0.0004 30 1 2.7290 -3.5167 -0.7701 31 1 1.0376 -4.0716 -0.8381 32 1 2.9101 -4.2299 1.5682 33 1 2.3296 -5.5958 0.5862 34 1 2.5487 -2.7937 2.6893 35 1 1.4037 -1.8255 3.6492 36 1 0.9009 -3.8173 5.0473 37 1 2.6347 -3.4173 5.0936 38 1 2.1859 -5.8788 4.7789 39 1 3.1286 -5.1592 3.4494 40 1 1.8356 -7.9480 4.2707 41 1 0.5973 -7.1181 5.2435 42 1 -0.6125 -9.0260 2.2093 43 1 1.0713 -9.5198 2.5811 44 1 -0.0430 -11.6544 2.4835 45 1 -1.5357 -11.0052 3.2347 46 1 1.0696 -11.7996 4.5380 47 1 -0.5833 -11.8077 5.2218 48 1 1.4479 -9.7352 5.4531 49 1 -0.1875 -9.7570 6.1676 50 1 -0.6781 -2.6398 0.7267 51 1 0.0953 -1.3391 1.6657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021738008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:39 Heat of formation + Delta-G solvation = -1.297407 kcal Electronic energy + Delta-G solvation = -29142.135841 eV Core-core repulsion = 25462.829655 eV Total energy + Delta-G solvation = -3679.306186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.52620 -39.06519 -37.54331 -35.54109 -32.90133 -32.57642 -32.13118 -30.28022 -29.48582 -28.95604 -26.89852 -25.57900 -24.49709 -22.50695 -22.01627 -21.47835 -21.20015 -20.98325 -19.05255 -17.85177 -17.12445 -16.73477 -16.35332 -15.71322 -15.37315 -15.17313 -15.06053 -14.37815 -14.10371 -14.03971 -13.61415 -13.42726 -13.34610 -12.97296 -12.81477 -12.62288 -12.42471 -12.35333 -12.24048 -12.16100 -11.69926 -11.57649 -11.46818 -11.11387 -11.09419 -10.91284 -10.77024 -10.72532 -10.62206 -10.45232 -10.09397 -10.07713 -9.96582 -9.64869 -9.51577 -9.28286 -8.55886 -8.49487 -8.22235 -6.66950 -5.79443 -3.21627 2.77381 3.04992 3.36272 3.43718 3.45100 3.88300 4.41870 4.48619 4.48759 4.70735 4.74886 4.91106 5.05289 5.13173 5.14301 5.19190 5.22741 5.35119 5.38228 5.46105 5.48100 5.50246 5.53790 5.59778 5.67128 5.67969 5.77283 5.83814 5.89805 6.00624 6.05741 6.09488 6.16431 6.25505 6.33137 6.42266 6.47961 6.56309 6.68870 6.72850 6.75872 6.78451 6.93686 6.98459 7.04000 7.32627 7.60850 7.69542 7.78944 8.38632 8.44192 9.20442 9.83757 10.41518 11.29238 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.002996 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.722835 B = 9343.768392 C = 9713.008800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.147 3.853 11 C -0.140 4.140 12 C 0.156 3.844 13 H 0.094 0.906 14 C -0.115 4.115 15 H 0.056 0.944 16 C -0.104 4.104 17 C -0.135 4.135 18 C 0.108 3.892 19 N -0.605 5.605 20 C 0.513 3.487 21 O -0.531 6.531 22 C 0.029 3.971 23 N -0.502 5.502 24 C 0.032 3.968 25 C -0.126 4.126 26 C -0.131 4.131 27 C 0.034 3.966 28 C 0.179 3.821 29 H 0.254 0.746 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.019 0.981 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -17.582 11.958 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.180 4.180 12 C 0.054 3.946 13 H 0.112 0.888 14 C -0.136 4.136 15 H 0.074 0.926 16 C -0.142 4.142 17 C -0.173 4.173 18 C -0.015 4.015 19 N -0.338 5.338 20 C 0.300 3.700 21 O -0.408 6.408 22 C -0.102 4.102 23 N -0.227 5.227 24 C -0.095 4.095 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.094 4.094 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.037 0.963 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.968 -17.424 11.635 21.161 hybrid contribution 1.398 0.724 0.066 1.575 sum 4.366 -16.700 11.701 20.853 Atomic orbital electron populations 1.70029 1.05239 1.25494 1.53833 1.25034 0.95233 0.98336 1.00921 0.86345 0.79149 0.83845 0.77719 1.21441 1.21603 1.20531 1.19119 0.92418 0.84673 1.41755 0.91773 1.44020 1.35640 1.01432 1.49984 1.20849 0.97844 0.86805 0.92485 1.22397 0.97503 0.99260 0.98839 1.21321 0.98400 0.89057 0.85796 0.88764 1.22024 0.97435 0.95079 0.99043 0.92578 1.21441 1.00164 0.97603 0.94947 1.21970 1.01545 0.94901 0.98910 1.21688 0.91372 0.96642 0.91775 1.48529 1.38321 1.19816 1.27184 1.20335 0.81456 0.81680 0.86520 1.90619 1.32495 1.72434 1.45204 1.22259 0.96123 0.93084 0.98755 1.64676 1.49115 1.03940 1.04928 1.23521 1.00357 0.93346 0.92281 1.22528 1.01477 0.96432 0.95986 1.22388 1.01054 0.96417 0.97043 1.22928 0.98671 0.91267 0.96525 1.20690 0.88717 0.97856 0.87536 0.93615 0.92572 0.96273 0.91731 0.93285 0.90586 0.92061 0.92086 0.91326 0.90819 0.91340 0.92168 0.88004 0.86817 0.94608 0.91266 0.90711 0.91688 0.91054 0.93916 0.90259 0.96258 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.63 9.60 -15.06 -0.14 -6.77 16 8 H 0.06 1.67 7.88 -52.48 -0.41 1.26 16 9 N -0.59 -14.20 2.64 -172.63 -0.46 -14.65 16 10 C 0.15 3.05 6.51 -3.74 -0.02 3.03 16 11 C -0.14 -2.44 5.02 -26.60 -0.13 -2.57 16 12 C 0.16 2.75 2.63 -67.33 -0.18 2.58 16 13 H 0.09 1.90 7.10 -51.93 -0.37 1.53 16 14 C -0.11 -2.15 2.45 -90.74 -0.22 -2.37 16 15 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.10 -1.74 4.86 -26.75 -0.13 -1.87 16 17 C -0.14 -1.70 6.08 -26.60 -0.16 -1.86 16 18 C 0.11 1.27 5.85 -3.72 -0.02 1.24 16 19 N -0.61 -8.91 2.66 -164.88 -0.44 -9.35 16 20 C 0.51 7.75 7.42 -10.99 -0.08 7.67 16 21 O -0.53 -9.84 12.99 5.56 0.07 -9.77 16 22 C 0.03 0.33 3.87 -4.97 -0.02 0.31 16 23 N -0.50 -6.06 5.26 -231.89 -1.22 -7.28 16 24 C 0.03 0.39 5.30 -1.90 -0.01 0.38 16 25 C -0.13 -1.20 7.06 -24.87 -0.18 -1.38 16 26 C -0.13 -1.06 6.93 -25.38 -0.18 -1.23 16 27 C 0.03 0.31 6.69 -2.76 -0.02 0.29 16 28 C 0.18 4.16 4.69 -3.94 -0.02 4.14 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.10 5.32 -51.93 -0.28 0.83 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.39 6.15 -51.92 -0.32 1.07 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.66 5.96 -51.93 -0.31 0.35 16 39 H 0.07 0.78 7.25 -51.93 -0.38 0.41 16 40 H 0.06 0.59 7.61 -51.93 -0.40 0.19 16 41 H 0.10 1.02 7.71 -51.93 -0.40 0.62 16 42 H 0.11 1.72 5.97 -51.93 -0.31 1.41 16 43 H 0.04 0.44 8.02 -51.93 -0.42 0.02 16 44 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.04 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -30.11 372.11 -11.36 -41.47 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.91 Total: 1.30 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.60 Total: 1.60 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -1.49 Total: -56.45 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.11 -11.36 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021738008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.173 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds