Wall clock time and date at job start Fri Apr 10 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86805 * 119.99770 * 2 1 4 4 H 1.48491 * 109.46780 * 269.99913 * 3 2 1 5 5 H 1.48502 * 109.47078 * 30.00225 * 3 2 1 6 6 H 1.48499 * 109.46752 * 150.00143 * 3 2 1 7 7 C 1.38810 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00213 * 168.92042 * 7 2 1 9 9 N 1.36944 * 120.00034 * 348.91156 * 7 2 1 10 10 C 1.46922 * 120.63079 * 327.42321 * 9 7 2 11 11 C 1.53195 * 108.77480 * 233.60707 * 10 9 7 12 12 C 1.53040 * 109.31021 * 305.36651 * 11 10 9 13 13 C 1.53037 * 109.54134 * 61.36160 * 12 11 10 14 14 C 1.46921 * 120.62781 * 147.42139 * 9 7 2 15 15 H 1.09009 * 109.58331 * 246.18157 * 14 9 7 16 16 C 1.52998 * 109.58903 * 6.60465 * 14 9 7 17 17 N 1.46504 * 109.47315 * 300.11859 * 16 14 9 18 18 C 1.34773 * 120.00446 * 180.02562 * 17 16 14 19 19 O 1.21282 * 119.99507 * 359.97438 * 18 17 16 20 20 C 1.50692 * 120.00304 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.57808 * 299.99886 * 20 18 17 22 22 C 1.53144 * 109.57855 * 60.25957 * 20 18 17 23 23 N 1.46911 * 109.36665 * 119.81703 * 22 20 18 24 24 C 1.46945 * 111.05436 * 297.99049 * 23 22 20 25 25 C 1.53674 * 109.30987 * 62.02658 * 24 23 22 26 26 C 1.53386 * 109.58182 * 179.73577 * 20 18 17 27 27 C 1.53392 * 108.59908 * 181.35576 * 26 20 18 28 28 C 1.46934 * 111.06362 * 61.99063 * 23 22 20 29 29 H 0.96998 * 120.00219 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58933 * 113.81819 * 10 9 7 31 31 H 1.09004 * 109.58731 * 353.38940 * 10 9 7 32 32 H 1.08997 * 109.49723 * 185.41622 * 11 10 9 33 33 H 1.08995 * 109.49814 * 65.31305 * 11 10 9 34 34 H 1.09006 * 109.45925 * 301.34152 * 12 11 10 35 35 H 1.08998 * 109.46239 * 181.38844 * 12 11 10 36 36 H 1.09005 * 109.49436 * 58.59052 * 13 12 11 37 37 H 1.09001 * 109.49671 * 178.68093 * 13 12 11 38 38 H 1.08999 * 109.46926 * 60.11260 * 16 14 9 39 39 H 1.09002 * 109.47538 * 180.12129 * 16 14 9 40 40 H 0.97003 * 119.99307 * 359.97438 * 17 16 14 41 41 H 1.08998 * 109.48495 * 239.78063 * 22 20 18 42 42 H 1.08992 * 109.48739 * 359.84840 * 22 20 18 43 43 H 1.09002 * 109.49250 * 181.92393 * 24 23 22 44 44 H 1.08996 * 109.49233 * 301.99573 * 24 23 22 45 45 H 1.09003 * 109.49964 * 240.23211 * 25 24 23 46 46 H 1.08992 * 109.82123 * 119.87283 * 25 24 23 47 47 H 1.09006 * 110.11446 * 60.58544 * 26 20 18 48 48 H 1.09000 * 109.46936 * 299.00047 * 27 26 20 49 49 H 1.08999 * 109.68851 * 178.73433 * 27 26 20 50 50 H 1.09009 * 109.48956 * 57.99933 * 28 23 22 51 51 H 1.08995 * 109.49379 * 178.07213 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0752 -1.2108 -0.1803 9 7 1.3448 -2.3771 0.2270 10 6 0.1804 -2.4167 1.1221 11 6 0.4106 -3.4974 2.1832 12 6 0.7177 -4.8279 1.4921 13 6 1.9939 -4.6893 0.6589 14 6 1.7816 -3.6221 -0.4193 15 1 1.0171 -3.9577 -1.1202 16 6 3.0947 -3.3791 -1.1660 17 7 2.8938 -2.3441 -2.1832 18 6 3.9203 -1.9632 -2.9691 19 8 5.0106 -2.4770 -2.8338 20 6 3.7135 -0.8991 -4.0158 21 1 2.9497 -1.2249 -4.7220 22 6 3.2685 0.4028 -3.3431 23 7 4.2473 1.4596 -3.6319 24 6 5.5680 1.1199 -3.0846 25 6 6.0798 -0.1656 -3.7533 26 6 5.0301 -0.6490 -4.7619 27 6 4.8030 0.4600 -5.7969 28 6 4.3284 1.7243 -5.0749 29 1 -0.4850 0.8400 0.0004 30 1 -0.7147 -2.6540 0.5471 31 1 0.0594 -1.4481 1.6074 32 1 -0.4853 -3.6034 2.7948 33 1 1.2518 -3.2132 2.8154 34 1 -0.1134 -5.0992 0.8410 35 1 0.8577 -5.6041 2.2444 36 1 2.8202 -4.3939 1.3055 37 1 2.2248 -5.6438 0.1857 38 1 3.8585 -3.0517 -0.4606 39 1 3.4160 -4.3032 -1.6465 40 1 2.0217 -1.9335 -2.2916 41 1 2.2922 0.6961 -3.7289 42 1 3.2038 0.2517 -2.2657 43 1 6.2645 1.9345 -3.2831 44 1 5.4869 0.9643 -2.0088 45 1 6.2378 -0.9323 -2.9947 46 1 7.0180 0.0351 -4.2704 47 1 5.3607 -1.5630 -5.2555 48 1 4.0439 0.1406 -6.5110 49 1 5.7347 0.6679 -6.3229 50 1 3.3445 2.0088 -5.4484 51 1 5.0349 2.5340 -5.2571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024442710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:44 Heat of formation + Delta-G solvation = -13.368988 kcal Electronic energy + Delta-G solvation = -30254.216832 eV Core-core repulsion = 26574.387183 eV Total energy + Delta-G solvation = -3679.829649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.93600 -38.64825 -37.51351 -34.20719 -33.06046 -32.00013 -31.60186 -30.71947 -30.17976 -29.87617 -26.05040 -24.94417 -23.24848 -22.81475 -22.71893 -22.12921 -20.72296 -19.80120 -19.09313 -17.44682 -16.98497 -16.32503 -16.23901 -16.06881 -15.50185 -15.16395 -14.55800 -14.24812 -13.95339 -13.76560 -13.42473 -12.97759 -12.90009 -12.73435 -12.59191 -12.43684 -12.18565 -12.07062 -11.98427 -11.90732 -11.82075 -11.48133 -11.36422 -11.14279 -10.93323 -10.76886 -10.56004 -10.42218 -10.29001 -10.17549 -10.08119 -10.01468 -9.97449 -9.52636 -9.40025 -8.99673 -8.55654 -8.20899 -7.94392 -6.63275 -5.83602 -3.32932 3.21761 3.40965 3.47379 3.53581 3.85821 4.20751 4.45382 4.68047 4.87067 5.04308 5.23524 5.26932 5.31374 5.32654 5.36454 5.43212 5.45243 5.52293 5.59065 5.64118 5.64947 5.69304 5.76814 5.94887 5.96592 5.99421 6.05362 6.15326 6.16196 6.17232 6.32160 6.32665 6.35454 6.35665 6.41359 6.48729 6.59060 6.62265 6.71011 6.73247 6.85857 6.98555 7.22388 7.28895 7.32337 7.38280 7.65514 7.77957 8.29777 8.41669 8.90390 9.16490 9.77384 10.36545 11.22576 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.005325 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.568706 B = 5257.307289 C = 6467.349752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.012 3.988 3 Si 0.874 3.126 4 H -0.254 1.254 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.136 3.864 17 N -0.692 5.692 18 C 0.514 3.486 19 O -0.562 6.562 20 C -0.139 4.139 21 H 0.092 0.908 22 C 0.059 3.941 23 N -0.526 5.526 24 C 0.051 3.949 25 C -0.158 4.158 26 C -0.062 4.062 27 C -0.149 4.149 28 C 0.052 3.948 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.415 0.585 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -2.105 -7.384 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.702 3.298 4 H -0.179 1.179 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.048 0.952 16 C 0.011 3.989 17 N -0.342 5.342 18 C 0.299 3.701 19 O -0.442 6.442 20 C -0.162 4.162 21 H 0.110 0.890 22 C -0.070 4.070 23 N -0.246 5.246 24 C -0.077 4.077 25 C -0.196 4.196 26 C -0.082 4.082 27 C -0.189 4.189 28 C -0.077 4.077 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.206 -1.845 -7.038 8.947 hybrid contribution 0.163 0.286 -0.304 0.448 sum 5.369 -1.559 -7.342 9.229 Atomic orbital electron populations 1.69987 1.05208 1.25525 1.53547 1.25104 0.95202 0.98036 1.00360 0.86824 0.79060 0.84068 0.79847 1.17856 1.22183 1.20854 1.19126 0.91127 0.83594 1.44407 0.91569 1.44042 1.33979 1.03121 1.50028 1.20754 0.88247 0.96893 0.89218 1.22204 0.99839 0.96807 0.99536 1.21357 0.97452 0.97392 0.98266 1.21940 0.98076 0.98121 0.98559 1.20726 0.93097 0.88667 0.92177 0.95192 1.21253 0.98193 0.89570 0.89841 1.46045 1.13886 1.39940 1.34367 1.20369 0.84432 0.82965 0.82287 1.90552 1.25029 1.56985 1.71672 1.22064 0.99626 0.96935 0.97543 0.89003 1.22408 0.95333 0.86658 1.02572 1.62472 1.07801 1.41486 1.12830 1.22314 0.89804 0.96014 0.99591 1.22541 0.97480 0.99543 1.00078 1.20845 0.93972 0.98052 0.95298 1.22302 1.01564 0.96814 0.98188 1.22208 1.01574 0.96384 0.87501 0.93609 0.96423 0.89735 0.93594 0.92885 0.92921 0.93791 0.92150 0.93145 0.91776 0.92910 0.74742 0.90023 0.88297 0.91146 0.90847 0.88590 0.92482 0.90272 0.91863 0.91684 0.90790 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 11.17 55.49 0.62 -23.16 16 2 C 0.01 0.31 5.03 -17.43 -0.09 0.23 16 3 Si 0.87 20.31 27.65 -169.99 -4.70 15.61 16 4 H -0.25 -5.65 6.07 56.52 0.34 -5.31 16 5 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.11 6.89 -15.06 -0.10 -6.22 16 8 H 0.07 1.66 5.92 -52.49 -0.31 1.35 16 9 N -0.59 -13.12 2.97 -164.78 -0.49 -13.61 16 10 C 0.17 3.88 5.24 -3.71 -0.02 3.86 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 13 C -0.13 -2.13 5.37 -26.62 -0.14 -2.27 16 14 C 0.16 3.05 3.01 -67.61 -0.20 2.85 16 15 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 16 C 0.14 2.53 4.43 -4.04 -0.02 2.51 16 17 N -0.69 -12.92 3.61 -60.29 -0.22 -13.14 16 18 C 0.51 9.41 6.60 -10.99 -0.07 9.34 16 19 O -0.56 -11.51 13.74 5.56 0.08 -11.43 16 20 C -0.14 -2.17 2.59 -91.50 -0.24 -2.41 16 21 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 22 C 0.06 1.00 4.90 -3.74 -0.02 0.98 16 23 N -0.53 -8.39 5.22 -233.94 -1.22 -9.61 16 24 C 0.05 0.79 6.12 -3.45 -0.02 0.77 16 25 C -0.16 -2.37 5.45 -26.18 -0.14 -2.52 16 26 C -0.06 -0.89 2.60 -90.01 -0.23 -1.12 16 27 C -0.15 -1.77 5.74 -26.46 -0.15 -1.92 16 28 C 0.05 0.66 6.09 -3.74 -0.02 0.64 16 29 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 2.13 6.22 -51.93 -0.32 1.81 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.32 7.43 -51.93 -0.39 0.93 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.41 8.13 7.27 -40.82 -0.30 7.83 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.10 1.97 4.97 -51.93 -0.26 1.72 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.10 1.71 5.57 -51.93 -0.29 1.42 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -26.79 367.06 -11.28 -38.08 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -9.09 Total: 11.73 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.79 Total: -0.01 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -1.31 Total: -59.51 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.70 Total: 15.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.79 -11.28 -38.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024442710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.709 kcal (2) G-P(sol) polarization free energy of solvation -26.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds