Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86805 * 119.99770 * 2 1 4 4 H 1.48491 * 109.46780 * 269.99913 * 3 2 1 5 5 H 1.48502 * 109.47078 * 30.00225 * 3 2 1 6 6 H 1.48499 * 109.46752 * 150.00143 * 3 2 1 7 7 C 1.38810 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00213 * 168.92042 * 7 2 1 9 9 N 1.36944 * 120.00034 * 348.91156 * 7 2 1 10 10 C 1.46922 * 120.63079 * 327.42321 * 9 7 2 11 11 C 1.53195 * 108.77480 * 233.60707 * 10 9 7 12 12 C 1.53040 * 109.31021 * 305.36651 * 11 10 9 13 13 C 1.53037 * 109.54134 * 61.36160 * 12 11 10 14 14 C 1.46921 * 120.62781 * 147.42139 * 9 7 2 15 15 H 1.09009 * 109.58331 * 246.18157 * 14 9 7 16 16 C 1.52998 * 109.58903 * 6.60465 * 14 9 7 17 17 N 1.46504 * 109.47315 * 300.11859 * 16 14 9 18 18 C 1.34773 * 120.00446 * 180.02562 * 17 16 14 19 19 O 1.21282 * 119.99507 * 359.97438 * 18 17 16 20 20 C 1.50692 * 120.00304 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.57808 * 299.99886 * 20 18 17 22 22 C 1.53144 * 109.57855 * 60.25957 * 20 18 17 23 23 N 1.46911 * 109.36665 * 119.81703 * 22 20 18 24 24 C 1.46945 * 111.05436 * 297.99049 * 23 22 20 25 25 C 1.53674 * 109.30987 * 62.02658 * 24 23 22 26 26 C 1.53386 * 109.58182 * 179.73577 * 20 18 17 27 27 C 1.53392 * 108.59908 * 181.35576 * 26 20 18 28 28 C 1.46934 * 111.06362 * 61.99063 * 23 22 20 29 29 H 0.96998 * 120.00219 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58933 * 113.81819 * 10 9 7 31 31 H 1.09004 * 109.58731 * 353.38940 * 10 9 7 32 32 H 1.08997 * 109.49723 * 185.41622 * 11 10 9 33 33 H 1.08995 * 109.49814 * 65.31305 * 11 10 9 34 34 H 1.09006 * 109.45925 * 301.34152 * 12 11 10 35 35 H 1.08998 * 109.46239 * 181.38844 * 12 11 10 36 36 H 1.09005 * 109.49436 * 58.59052 * 13 12 11 37 37 H 1.09001 * 109.49671 * 178.68093 * 13 12 11 38 38 H 1.08999 * 109.46926 * 60.11260 * 16 14 9 39 39 H 1.09002 * 109.47538 * 180.12129 * 16 14 9 40 40 H 0.97003 * 119.99307 * 359.97438 * 17 16 14 41 41 H 1.08998 * 109.48495 * 239.78063 * 22 20 18 42 42 H 1.08992 * 109.48739 * 359.84840 * 22 20 18 43 43 H 1.09002 * 109.49250 * 181.92393 * 24 23 22 44 44 H 1.08996 * 109.49233 * 301.99573 * 24 23 22 45 45 H 1.09003 * 109.49964 * 240.23211 * 25 24 23 46 46 H 1.08992 * 109.82123 * 119.87283 * 25 24 23 47 47 H 1.09006 * 110.11446 * 60.58544 * 26 20 18 48 48 H 1.09000 * 109.46936 * 299.00047 * 27 26 20 49 49 H 1.08999 * 109.68851 * 178.73433 * 27 26 20 50 50 H 1.09009 * 109.48956 * 57.99933 * 28 23 22 51 51 H 1.08995 * 109.49379 * 178.07213 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0752 -1.2108 -0.1803 9 7 1.3448 -2.3771 0.2270 10 6 0.1804 -2.4167 1.1221 11 6 0.4106 -3.4974 2.1832 12 6 0.7177 -4.8279 1.4921 13 6 1.9939 -4.6893 0.6589 14 6 1.7816 -3.6221 -0.4193 15 1 1.0171 -3.9577 -1.1202 16 6 3.0947 -3.3791 -1.1660 17 7 2.8938 -2.3441 -2.1832 18 6 3.9203 -1.9632 -2.9691 19 8 5.0106 -2.4770 -2.8338 20 6 3.7135 -0.8991 -4.0158 21 1 2.9497 -1.2249 -4.7220 22 6 3.2685 0.4028 -3.3431 23 7 4.2473 1.4596 -3.6319 24 6 5.5680 1.1199 -3.0846 25 6 6.0798 -0.1656 -3.7533 26 6 5.0301 -0.6490 -4.7619 27 6 4.8030 0.4600 -5.7969 28 6 4.3284 1.7243 -5.0749 29 1 -0.4850 0.8400 0.0004 30 1 -0.7147 -2.6540 0.5471 31 1 0.0594 -1.4481 1.6074 32 1 -0.4853 -3.6034 2.7948 33 1 1.2518 -3.2132 2.8154 34 1 -0.1134 -5.0992 0.8410 35 1 0.8577 -5.6041 2.2444 36 1 2.8202 -4.3939 1.3055 37 1 2.2248 -5.6438 0.1857 38 1 3.8585 -3.0517 -0.4606 39 1 3.4160 -4.3032 -1.6465 40 1 2.0217 -1.9335 -2.2916 41 1 2.2922 0.6961 -3.7289 42 1 3.2038 0.2517 -2.2657 43 1 6.2645 1.9345 -3.2831 44 1 5.4869 0.9643 -2.0088 45 1 6.2378 -0.9323 -2.9947 46 1 7.0180 0.0351 -4.2704 47 1 5.3607 -1.5630 -5.2555 48 1 4.0439 0.1406 -6.5110 49 1 5.7347 0.6679 -6.3229 50 1 3.3445 2.0088 -5.4484 51 1 5.0349 2.5340 -5.2571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024442710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = -29.718144 kcal Electronic energy + Delta-G solvation = -30254.925784 eV Core-core repulsion = 26574.387183 eV Total energy + Delta-G solvation = -3680.538601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.19498 -40.13026 -39.05305 -35.72847 -34.87160 -33.23016 -32.94565 -31.82203 -31.77518 -31.47265 -27.68440 -26.61031 -24.59377 -24.03436 -23.82771 -23.74702 -22.27042 -21.27422 -20.66077 -18.85389 -18.31616 -17.89796 -17.55472 -17.33975 -17.11175 -16.59498 -16.03195 -15.87241 -15.57436 -15.30171 -14.86403 -14.60631 -14.24105 -14.05212 -13.95599 -13.81446 -13.66519 -13.49436 -13.24686 -13.12429 -13.05864 -13.00185 -12.71113 -12.60525 -12.54426 -12.33179 -12.27047 -12.05895 -11.89024 -11.74650 -11.52982 -11.35812 -11.13501 -11.08565 -11.03599 -10.46695 -10.42313 -9.77421 -9.16397 -8.50244 -7.79804 -5.28784 1.48040 1.54287 1.59416 1.75113 2.43008 2.53863 3.03278 3.37009 3.53441 3.59138 3.70545 3.88167 4.01017 4.07160 4.11468 4.21822 4.23355 4.26963 4.28384 4.35429 4.39204 4.43550 4.48999 4.56484 4.64975 4.66273 4.77322 4.85788 4.87409 4.97659 4.99708 5.02177 5.09877 5.13045 5.14423 5.21005 5.21589 5.24287 5.28467 5.37586 5.43686 5.46945 5.65068 5.69981 5.77919 5.85508 6.06281 6.19350 6.47922 6.77406 7.23299 7.40493 7.91235 8.45488 9.24043 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.005325 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.568706 B = 5257.307289 C = 6467.349752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.020 4.020 3 Si 0.917 3.083 4 H -0.240 1.240 5 H -0.310 1.310 6 H -0.298 1.298 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.142 3.858 17 N -0.695 5.695 18 C 0.511 3.489 19 O -0.585 6.585 20 C -0.132 4.132 21 H 0.112 0.888 22 C 0.063 3.937 23 N -0.542 5.542 24 C 0.053 3.947 25 C -0.152 4.152 26 C -0.062 4.062 27 C -0.139 4.139 28 C 0.050 3.950 29 H 0.247 0.753 30 H 0.002 0.998 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.410 0.590 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.041 0.959 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -3.019 -9.134 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.217 4.217 3 Si 0.747 3.253 4 H -0.164 1.164 5 H -0.238 1.238 6 H -0.225 1.225 7 C -0.364 4.364 8 H 0.072 0.928 9 N -0.325 5.325 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.017 3.983 17 N -0.344 5.344 18 C 0.298 3.702 19 O -0.467 6.467 20 C -0.155 4.155 21 H 0.130 0.870 22 C -0.066 4.066 23 N -0.262 5.262 24 C -0.075 4.075 25 C -0.191 4.191 26 C -0.081 4.081 27 C -0.178 4.178 28 C -0.078 4.078 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.100 0.900 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.790 -2.779 -8.802 10.896 hybrid contribution 0.031 0.536 0.283 0.607 sum 5.822 -2.243 -8.519 10.559 Atomic orbital electron populations 1.70089 1.05931 1.25205 1.55597 1.25405 0.95456 0.99535 1.01328 0.86176 0.77087 0.82072 0.80011 1.16387 1.23788 1.22507 1.19044 0.90534 0.84429 1.42364 0.92774 1.44216 1.33791 1.03761 1.50724 1.20566 0.87720 0.96541 0.89799 1.22064 1.00336 0.96744 0.98392 1.21337 0.97218 0.96576 0.98805 1.21895 0.98116 0.98430 0.97725 1.20873 0.92954 0.87843 0.92917 0.94983 1.21189 0.97329 0.90197 0.89554 1.46079 1.13799 1.40021 1.34488 1.20880 0.83767 0.83082 0.82482 1.90544 1.25754 1.57946 1.72427 1.22083 1.01262 0.95197 0.96985 0.86988 1.22226 0.96041 0.87804 1.00530 1.62461 1.07549 1.40919 1.15319 1.22274 0.90330 0.97095 0.97848 1.22443 0.98843 0.98248 0.99596 1.20881 0.92621 0.99088 0.95528 1.22240 1.03085 0.95009 0.97424 1.22345 1.02731 0.97396 0.85319 0.94348 0.97998 0.93305 0.91792 0.93819 0.92357 0.90862 0.93072 0.90090 0.94208 0.91185 0.75297 0.89789 0.91777 0.88903 0.93981 0.91903 0.90382 0.90368 0.90285 0.89727 0.90000 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 11.17 21.65 0.24 -50.13 16 2 C -0.02 -1.06 5.03 84.86 0.43 -0.64 16 3 Si 0.92 43.52 27.65 68.60 1.90 45.42 16 4 H -0.24 -10.70 6.07 99.48 0.60 -10.10 16 5 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 6 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 7 C -0.23 -11.60 6.89 84.03 0.58 -11.02 16 8 H 0.05 2.83 5.92 -2.91 -0.02 2.82 16 9 N -0.60 -27.16 2.97 -675.24 -2.00 -29.16 16 10 C 0.18 8.09 5.24 86.36 0.45 8.54 16 11 C -0.14 -4.87 6.08 30.67 0.19 -4.68 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.82 5.37 30.67 0.16 -3.65 16 14 C 0.16 5.98 3.01 44.97 0.14 6.12 16 15 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 16 C 0.14 5.27 4.43 86.38 0.38 5.65 16 17 N -0.69 -26.17 3.61 -463.06 -1.67 -27.84 16 18 C 0.51 18.75 6.60 87.65 0.58 19.33 16 19 O -0.58 -24.15 13.74 -3.04 -0.04 -24.19 16 20 C -0.13 -4.01 2.59 -11.37 -0.03 -4.03 16 21 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 22 C 0.06 2.12 4.90 86.35 0.42 2.54 16 23 N -0.54 -16.53 5.22 -894.05 -4.67 -21.20 16 24 C 0.05 1.60 6.12 86.52 0.53 2.13 16 25 C -0.15 -4.42 5.45 30.95 0.17 -4.25 16 26 C -0.06 -1.64 2.60 -10.40 -0.03 -1.66 16 27 C -0.14 -2.77 5.74 30.77 0.18 -2.59 16 28 C 0.05 1.11 6.09 86.34 0.53 1.64 16 29 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.05 2.55 6.22 -2.39 -0.01 2.53 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.67 7.43 -2.39 -0.02 1.65 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 40 H 0.41 16.30 7.27 -92.71 -0.67 15.62 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.06 2.61 4.97 -2.39 -0.01 2.60 16 43 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 2.27 5.57 -2.39 -0.01 2.25 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 2.12 8.13 -2.38 -0.02 2.10 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 51 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -59.95 367.06 -1.26 -61.21 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.13 Total: 35.34 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 4.85 Total: 10.55 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -8.10 Total: -128.33 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.04 Total: -24.19 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Total: -59.95 -1.26 -61.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024442710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.495 kcal (2) G-P(sol) polarization free energy of solvation -59.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds