Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99292 * 2 1 4 4 C 1.50694 * 109.47207 * 293.94935 * 3 2 1 5 5 O 1.21276 * 120.00330 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99973 * 180.02562 * 4 3 2 7 7 C 1.47218 * 126.69963 * 359.97066 * 6 4 3 8 8 C 1.53785 * 106.37485 * 148.72516 * 7 6 4 9 9 H 1.08999 * 111.70632 * 256.37656 * 8 7 6 10 10 C 1.54316 * 109.05785 * 132.43011 * 8 7 6 11 11 C 1.55057 * 103.93566 * 222.03251 * 10 8 7 12 12 C 1.55059 * 102.14033 * 40.03914 * 11 10 8 13 13 H 1.09000 * 110.53134 * 78.57559 * 12 11 10 14 14 N 1.46498 * 110.53189 * 201.34923 * 12 11 10 15 15 C 1.36941 * 120.00148 * 273.54585 * 14 12 11 16 16 H 1.08001 * 119.99555 * 0.02562 * 15 14 12 17 17 C 1.38807 * 120.00074 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00081 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46981 * 89.99845 * 19 17 15 21 21 H 1.48506 * 109.47133 * 210.00268 * 19 17 15 22 22 H 1.48500 * 109.46855 * 329.99844 * 19 17 15 23 23 C 1.54357 * 103.91999 * 319.99071 * 12 11 10 24 24 H 1.09004 * 112.32912 * 262.35080 * 23 12 11 25 25 C 1.47212 * 126.70226 * 179.97438 * 6 4 3 26 26 C 1.46901 * 110.99966 * 123.94987 * 2 1 3 27 27 C 1.53780 * 113.61118 * 153.54765 * 26 2 1 28 28 C 1.53787 * 87.08063 * 220.02131 * 27 26 2 29 29 C 1.53778 * 113.60953 * 56.05148 * 26 2 1 30 30 H 1.09001 * 109.47063 * 60.00780 * 1 2 3 31 31 H 1.09009 * 109.46610 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47530 * 300.00066 * 1 2 3 33 33 H 1.09002 * 109.46684 * 173.95351 * 3 2 1 34 34 H 1.08995 * 109.47037 * 53.95615 * 3 2 1 35 35 H 1.08998 * 110.07003 * 29.50027 * 7 6 4 36 36 H 1.08996 * 110.11962 * 267.97771 * 7 6 4 37 37 H 1.08998 * 110.54122 * 103.42151 * 10 8 7 38 38 H 1.09007 * 110.53874 * 340.64444 * 10 8 7 39 39 H 1.09002 * 110.90625 * 158.26001 * 11 10 8 40 40 H 1.09003 * 110.90495 * 281.81925 * 11 10 8 41 41 H 0.97001 * 120.00153 * 93.54593 * 14 12 11 42 42 H 0.96998 * 119.99941 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.07297 * 330.50772 * 25 6 4 44 44 H 1.09007 * 110.07402 * 91.99071 * 25 6 4 45 45 H 1.09001 * 112.84933 * 284.85749 * 26 2 1 46 46 H 1.08998 * 113.61609 * 334.57130 * 27 26 2 47 47 H 1.09001 * 113.61623 * 105.47331 * 27 26 2 48 48 H 1.08996 * 113.61120 * 270.88598 * 28 27 26 49 49 H 1.08996 * 113.69106 * 139.99203 * 28 27 26 50 50 H 1.09004 * 113.61372 * 254.52219 * 29 26 2 51 51 H 1.08997 * 113.61905 * 25.35054 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 8 1.0047 1.4456 -2.1407 6 7 2.0187 3.3199 -1.5237 7 6 2.7847 4.1835 -0.6100 8 6 3.6204 5.1207 -1.4979 9 1 4.6661 4.8154 -1.5342 10 6 3.4664 6.5687 -0.9871 11 6 3.3177 7.4078 -2.2825 12 6 2.4105 6.5024 -3.1552 13 1 1.3703 6.5869 -2.8408 14 7 2.5503 6.8480 -4.5720 15 6 1.7825 7.8448 -5.1126 16 1 1.0742 8.3763 -4.4943 17 6 1.9145 8.1719 -6.4551 18 7 2.7773 7.5237 -7.2086 19 14 0.8666 9.5311 -7.1927 20 1 1.5761 10.8290 -7.0625 21 1 0.6211 9.2429 -8.6287 22 1 -0.4306 9.6017 -6.4732 23 6 2.9421 5.0778 -2.8896 24 1 3.6307 4.7415 -3.6648 25 6 1.7511 4.1181 -2.7314 26 6 1.9955 -0.7659 1.1377 27 6 3.3939 -1.3552 0.8891 28 6 2.9044 -2.6190 1.6159 29 6 1.4815 -2.2141 1.1958 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.0796 1.3445 0.1083 34 1 1.5609 1.9273 0.8309 35 1 3.4402 3.5777 0.0156 36 1 2.1058 4.7654 0.0133 37 1 4.3535 6.8751 -0.4329 38 1 2.5752 6.6625 -0.3664 39 1 2.8314 8.3610 -2.0749 40 1 4.2859 7.5629 -2.7587 41 1 3.1867 6.3709 -5.1272 42 1 2.8698 7.7526 -8.1467 43 1 1.6776 3.4663 -3.6019 44 1 0.8275 4.6839 -2.6089 45 1 1.9067 -0.2327 2.0842 46 1 3.6185 -1.5172 -0.1651 47 1 4.1896 -0.8289 1.4163 48 1 3.0656 -2.5929 2.6936 49 1 3.2470 -3.5474 1.1590 50 1 0.7334 -2.3812 1.9707 51 1 1.1819 -2.6104 0.2256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026284006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = 8.970372 kcal Electronic energy + Delta-G solvation = -27753.554607 eV Core-core repulsion = 24074.693666 eV Total energy + Delta-G solvation = -3678.860941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46920 -39.57037 -38.32001 -35.31839 -34.94563 -33.36451 -31.04287 -30.13210 -28.51041 -28.09233 -26.47752 -25.54782 -25.04144 -23.63260 -22.93481 -22.26593 -20.25707 -19.64580 -19.18321 -18.92261 -17.41158 -17.06257 -16.30496 -16.03895 -15.80699 -15.34838 -15.17042 -14.75516 -14.43654 -14.13550 -13.91134 -13.67960 -13.25759 -13.03809 -13.00223 -12.75830 -12.69568 -12.32559 -12.11036 -12.03159 -11.76133 -11.74406 -11.65257 -11.17712 -11.14800 -10.91251 -10.79323 -10.78516 -10.69742 -10.54637 -10.38908 -10.29123 -10.21787 -9.94969 -9.68912 -9.58623 -8.87564 -8.62930 -8.49382 -6.94949 -5.76888 -3.05728 2.68618 2.90442 3.43557 3.48913 3.50609 3.76377 4.21926 4.36226 4.43346 4.54002 4.56318 4.60935 4.62443 4.82641 4.87411 4.99954 5.03165 5.17259 5.28366 5.32052 5.40123 5.41484 5.43315 5.44632 5.53355 5.56370 5.58617 5.61043 5.65135 5.77776 5.85715 5.88306 5.93023 5.95445 6.00039 6.06125 6.10853 6.20954 6.25735 6.33439 6.42664 6.54567 6.64847 6.71449 6.78425 6.88587 7.03746 7.63885 7.70199 8.26991 8.41629 9.52796 10.10200 10.44205 11.45644 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002413 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.248779 B =11600.151299 C =12183.396304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.513 5.513 3 C 0.042 3.958 4 C 0.529 3.471 5 O -0.524 6.524 6 N -0.620 5.620 7 C 0.105 3.895 8 C -0.100 4.100 9 H 0.086 0.914 10 C -0.117 4.117 11 C -0.143 4.143 12 C 0.185 3.815 13 H 0.055 0.945 14 N -0.721 5.721 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.104 4.104 24 H 0.089 0.911 25 C 0.116 3.884 26 C 0.050 3.950 27 C -0.128 4.128 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -15.063 22.158 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.237 5.237 3 C -0.089 4.089 4 C 0.317 3.683 5 O -0.400 6.400 6 N -0.355 5.355 7 C -0.018 4.018 8 C -0.119 4.119 9 H 0.104 0.896 10 C -0.155 4.155 11 C -0.183 4.183 12 C 0.074 3.926 13 H 0.073 0.927 14 N -0.361 5.361 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.124 4.124 24 H 0.107 0.893 25 C -0.006 4.006 26 C -0.058 4.058 27 C -0.166 4.166 28 C -0.180 4.180 29 C -0.167 4.167 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.237 -15.607 21.214 26.366 hybrid contribution -0.492 1.197 0.171 1.305 sum 0.745 -14.410 21.385 25.797 Atomic orbital electron populations 1.22539 0.86509 1.02415 1.01491 1.61922 1.08751 1.11439 1.41589 1.21911 1.01958 0.89999 0.95016 1.20087 0.79578 0.79743 0.88892 1.90681 1.39556 1.63104 1.46619 1.48693 1.55377 1.11848 1.19542 1.22320 0.94201 0.92628 0.92683 1.22563 0.99094 0.95449 0.94817 0.89599 1.22506 1.00929 0.93804 0.98272 1.23301 1.01508 0.98766 0.94770 1.21231 0.96200 0.88980 0.86202 0.92687 1.42435 1.47241 1.42292 1.04106 1.19216 1.14997 1.10022 0.92805 0.91210 1.24742 0.99686 0.99965 0.96509 1.69656 1.38358 1.43529 1.06462 0.86210 0.79845 0.81772 0.78480 1.21767 1.21791 1.20777 1.22871 0.96141 0.97011 0.96378 0.89252 1.22168 0.98029 0.92896 0.87492 1.23258 0.97009 0.93652 0.91870 1.22992 0.95480 0.96352 1.01775 1.22719 0.96695 0.98350 1.00257 1.22987 0.96784 0.94740 1.02171 0.89247 0.91297 0.96359 0.88091 0.92219 0.91229 0.91211 0.92196 0.91741 0.92183 0.91512 0.78161 0.93495 0.90347 0.91156 0.91743 0.88976 0.91740 0.90339 0.91034 0.91707 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.01 60.07 0.54 0.74 16 2 N -0.51 -5.60 4.46 -235.35 -1.05 -6.65 16 3 C 0.04 0.44 4.40 -4.98 -0.02 0.42 16 4 C 0.53 7.56 7.60 -10.99 -0.08 7.47 16 5 O -0.52 -9.52 14.54 5.56 0.08 -9.44 16 6 N -0.62 -8.41 3.32 -171.58 -0.57 -8.98 16 7 C 0.10 1.10 6.38 -3.24 -0.02 1.08 16 8 C -0.10 -1.20 3.91 -88.53 -0.35 -1.55 16 9 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 10 C -0.12 -1.41 6.35 -24.95 -0.16 -1.57 16 11 C -0.14 -2.34 6.60 -24.56 -0.16 -2.50 16 12 C 0.18 3.46 3.02 -66.13 -0.20 3.26 16 13 H 0.06 1.07 7.16 -51.93 -0.37 0.69 16 14 N -0.72 -17.51 5.23 -51.69 -0.27 -17.78 16 15 C -0.24 -6.51 9.98 -15.06 -0.15 -6.66 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.10 -1.63 3.58 -88.52 -0.32 -1.95 16 24 H 0.09 1.53 7.82 -51.93 -0.41 1.12 16 25 C 0.12 1.85 6.54 -3.25 -0.02 1.83 16 26 C 0.05 0.42 3.20 -66.90 -0.21 0.21 16 27 C -0.13 -0.98 7.66 -25.92 -0.20 -1.18 16 28 C -0.14 -0.92 8.08 -25.91 -0.21 -1.13 16 29 C -0.13 -0.96 6.54 -25.92 -0.17 -1.13 16 30 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 31 H 0.07 0.67 6.91 -51.92 -0.36 0.31 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.10 0.91 7.63 -51.93 -0.40 0.52 16 34 H 0.06 0.54 8.12 -51.93 -0.42 0.11 16 35 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 36 H 0.07 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.71 7.19 -51.92 -0.37 0.34 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.38 10.00 7.59 -40.82 -0.31 9.69 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 44 H 0.07 1.16 7.13 -51.93 -0.37 0.79 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -31.64 391.20 -11.12 -42.76 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -9.08 Total: 7.28 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.83 Total: -3.11 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -1.17 Total: -60.69 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.64 -11.12 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.733 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds