Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99738 * 2 1 4 4 C 1.50702 * 109.47149 * 66.04567 * 3 2 1 5 5 O 1.21284 * 119.99695 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99918 * 179.97438 * 4 3 2 7 7 C 1.49214 * 126.06014 * 0.02562 * 6 4 3 8 8 C 1.50349 * 104.85868 * 172.93344 * 7 6 4 9 9 H 1.08996 * 110.05147 * 279.54004 * 8 7 6 10 10 C 1.50998 * 125.56828 * 144.33318 * 8 7 6 11 11 C 1.56403 * 101.59591 * 203.98021 * 10 8 7 12 12 C 1.55940 * 105.78889 * 25.01582 * 11 10 8 13 13 H 1.08991 * 110.49457 * 248.73828 * 12 11 10 14 14 N 1.46500 * 110.49139 * 126.20963 * 12 11 10 15 15 C 1.36936 * 120.00002 * 86.45356 * 14 12 11 16 16 H 1.08000 * 120.00127 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99625 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00460 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99721 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46952 * 60.00003 * 19 17 15 21 21 H 1.48505 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47242 * 300.00200 * 19 17 15 23 23 C 1.50299 * 104.15719 * 7.54219 * 12 11 10 24 24 H 1.09001 * 109.99862 * 80.48695 * 23 12 11 25 25 C 1.49702 * 126.05711 * 179.71535 * 6 4 3 26 26 C 1.46896 * 111.00153 * 236.04936 * 2 1 3 27 27 C 1.53786 * 113.61383 * 287.64344 * 26 2 1 28 28 C 1.53777 * 87.08329 * 220.02029 * 27 26 2 29 29 C 1.53777 * 113.61626 * 190.14924 * 26 2 1 30 30 H 1.08997 * 109.47020 * 53.57148 * 1 2 3 31 31 H 1.09004 * 109.47230 * 173.56316 * 1 2 3 32 32 H 1.08994 * 109.47355 * 293.56460 * 1 2 3 33 33 H 1.09003 * 109.46800 * 186.04576 * 3 2 1 34 34 H 1.08997 * 109.47008 * 306.04499 * 3 2 1 35 35 H 1.08999 * 110.36413 * 291.77883 * 7 6 4 36 36 H 1.09006 * 110.35864 * 54.09173 * 7 6 4 37 37 H 1.09001 * 111.00219 * 322.05909 * 10 8 7 38 38 H 1.09003 * 111.00015 * 85.86231 * 10 8 7 39 39 H 1.08997 * 110.18137 * 144.09989 * 11 10 8 40 40 H 1.09001 * 110.18559 * 265.85740 * 11 10 8 41 41 H 0.97001 * 120.00036 * 266.45322 * 14 12 11 42 42 H 0.96998 * 120.00342 * 180.02562 * 18 17 15 43 43 H 1.08993 * 110.84799 * 273.06054 * 25 6 4 44 44 H 1.09008 * 110.84240 * 36.67162 * 25 6 4 45 45 H 1.08999 * 112.85373 * 58.94713 * 26 2 1 46 46 H 1.09007 * 113.61151 * 334.57257 * 27 26 2 47 47 H 1.09002 * 113.61736 * 105.46414 * 27 26 2 48 48 H 1.08999 * 113.61268 * 270.88528 * 28 27 26 49 49 H 1.09001 * 113.61530 * 139.98022 * 28 27 26 50 50 H 1.09001 * 113.61425 * 254.52775 * 29 26 2 51 51 H 1.09003 * 113.61214 * 25.34316 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0188 3.3198 1.5237 7 6 2.7959 4.1826 0.5866 8 6 2.8028 5.5416 1.2296 9 1 1.8619 6.0543 1.0298 10 6 3.9471 6.5260 1.1905 11 6 3.6659 7.3858 2.4664 12 6 2.8412 6.4700 3.4218 13 1 1.8189 6.8366 3.5135 14 7 3.4786 6.3969 4.7389 15 6 3.2013 7.3450 5.6873 16 1 2.5131 8.1469 5.4642 17 6 3.8049 7.2753 6.9354 18 7 4.6439 6.2984 7.2071 19 14 3.4272 8.5690 8.2290 20 1 1.9736 8.5562 8.5321 21 1 4.1930 8.2706 9.4659 22 1 3.8144 9.9083 7.7174 23 6 2.8628 5.1250 2.7514 24 1 3.8053 4.6192 2.9610 25 6 1.7328 4.1207 2.7558 26 6 1.9955 -0.7659 -1.1376 27 6 1.8176 -2.2864 -0.9917 28 6 3.2248 -2.4299 -1.5950 29 6 3.5111 -1.0154 -1.0637 30 1 -0.3633 0.6102 -0.8268 31 1 -0.3634 -1.0212 -0.1152 32 1 -0.3634 0.4108 0.9419 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9273 -0.8309 35 1 3.8140 3.8076 0.4816 36 1 2.3044 4.2254 -0.3854 37 1 4.9060 6.0136 1.2682 38 1 3.9055 7.1379 0.2893 39 1 4.6044 7.6748 2.9394 40 1 3.0894 8.2725 2.2028 41 1 4.0970 5.6769 4.9392 42 1 5.0654 6.2495 8.0794 43 1 0.7668 4.6194 2.6787 44 1 1.7764 3.4924 3.6455 45 1 1.6635 -0.3765 -2.1000 46 1 1.7501 -2.6208 0.0437 47 1 1.0283 -2.6962 -1.6220 48 1 3.2287 -2.4966 -2.6829 49 1 3.8265 -3.2048 -1.1201 50 1 4.0892 -0.3991 -1.7522 51 1 3.9070 -1.0008 -0.0482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026284007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = 26.425305 kcal Electronic energy + Delta-G solvation = -27762.804097 eV Core-core repulsion = 24084.700059 eV Total energy + Delta-G solvation = -3678.104039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.58557 -39.66352 -38.40075 -35.40832 -34.95278 -33.38170 -30.91940 -30.20556 -28.52381 -27.99537 -26.37728 -25.59307 -25.32896 -23.41078 -22.99487 -22.18049 -20.22356 -19.62147 -19.20755 -18.99191 -17.21588 -16.97792 -16.50392 -16.20168 -15.53730 -15.43466 -15.05531 -14.70649 -14.50418 -14.06012 -13.87618 -13.75665 -13.63378 -13.06616 -12.88614 -12.68614 -12.59745 -12.28103 -12.15517 -12.01734 -11.85158 -11.67868 -11.57554 -11.39455 -11.14544 -11.03162 -10.81692 -10.77280 -10.75942 -10.52360 -10.46182 -10.17595 -10.13116 -9.81330 -9.66289 -9.50419 -8.90587 -8.60335 -8.49836 -6.96967 -5.76763 -3.06097 2.72753 2.80848 3.44137 3.48816 3.49732 3.75445 4.12099 4.25145 4.39592 4.54162 4.55841 4.58266 4.63310 4.83059 4.99405 5.04712 5.13280 5.21794 5.26170 5.30106 5.35839 5.41902 5.43917 5.44295 5.54466 5.56184 5.57864 5.61982 5.66564 5.73278 5.85136 5.90542 5.92945 5.96226 6.02122 6.05884 6.12500 6.13694 6.21196 6.33913 6.35592 6.50690 6.63242 6.71481 6.78288 6.91108 7.05943 7.59606 7.70008 8.28605 8.41419 9.52609 10.09449 10.43814 11.45593 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.002457 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.585891 B =11392.715796 C =11849.859864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.042 3.958 4 C 0.529 3.471 5 O -0.525 6.525 6 N -0.628 5.628 7 C 0.122 3.878 8 C -0.130 4.130 9 H 0.081 0.919 10 C -0.097 4.097 11 C -0.143 4.143 12 C 0.196 3.804 13 H 0.054 0.946 14 N -0.720 5.720 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.116 4.116 24 H 0.082 0.918 25 C 0.130 3.870 26 C 0.050 3.950 27 C -0.125 4.125 28 C -0.142 4.142 29 C -0.132 4.132 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -11.408 -22.701 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.237 5.237 3 C -0.089 4.089 4 C 0.316 3.684 5 O -0.401 6.401 6 N -0.364 5.364 7 C 0.000 4.000 8 C -0.149 4.149 9 H 0.099 0.901 10 C -0.135 4.135 11 C -0.184 4.184 12 C 0.085 3.915 13 H 0.072 0.928 14 N -0.360 5.360 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.136 4.136 24 H 0.100 0.900 25 C 0.009 3.991 26 C -0.058 4.058 27 C -0.163 4.163 28 C -0.180 4.180 29 C -0.170 4.170 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.064 -11.943 -21.685 25.087 hybrid contribution -0.179 1.025 -0.032 1.041 sum -4.244 -10.917 -21.717 24.674 Atomic orbital electron populations 1.22527 0.86559 1.01592 1.02161 1.61926 1.08705 1.11510 1.41554 1.21915 1.02098 0.89878 0.94975 1.20098 0.79484 0.79932 0.88861 1.90679 1.39656 1.63125 1.46632 1.49904 1.55430 1.11918 1.19175 1.21254 0.96056 0.90515 0.92226 1.22171 1.01080 0.94454 0.97207 0.90094 1.21737 0.96643 0.96573 0.98532 1.23806 1.01911 0.98151 0.94577 1.20089 0.95613 0.90005 0.85822 0.92842 1.42488 1.52798 1.32015 1.08748 1.19185 1.21432 1.04203 0.92417 0.91209 1.24747 0.99690 0.98527 0.97864 1.69644 1.32924 1.32947 1.22489 0.86287 0.77607 0.81090 0.81300 1.21259 1.21725 1.21288 1.22544 0.99118 0.96968 0.95017 0.89981 1.21552 0.97711 0.92721 0.87093 1.23252 0.96251 0.94382 0.91902 1.22948 0.96945 0.94327 1.02105 1.22711 0.97391 0.97512 1.00347 1.23008 0.94927 0.96786 1.02266 0.96334 0.91541 0.89171 0.88021 0.92312 0.91251 0.91437 0.91594 0.92218 0.90719 0.92729 0.78148 0.93424 0.91286 0.89893 0.91896 0.88971 0.91790 0.90335 0.90997 0.91648 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.15 60.07 0.55 0.76 16 2 N -0.51 -5.71 4.44 -235.35 -1.05 -6.76 16 3 C 0.04 0.45 4.61 -4.97 -0.02 0.43 16 4 C 0.53 7.63 7.64 -10.99 -0.08 7.55 16 5 O -0.53 -9.60 14.64 5.55 0.08 -9.52 16 6 N -0.63 -8.55 3.42 -171.40 -0.59 -9.14 16 7 C 0.12 1.29 6.41 -3.86 -0.02 1.27 16 8 C -0.13 -1.57 2.76 -90.27 -0.25 -1.82 16 9 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 10 C -0.10 -1.20 6.72 -25.91 -0.17 -1.37 16 11 C -0.14 -2.32 6.74 -23.33 -0.16 -2.48 16 12 C 0.20 3.66 3.39 -67.71 -0.23 3.44 16 13 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 14 N -0.72 -17.50 5.12 -53.21 -0.27 -17.77 16 15 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.12 -1.84 2.42 -90.20 -0.22 -2.05 16 24 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 25 C 0.13 2.04 6.82 -3.17 -0.02 2.02 16 26 C 0.05 0.43 3.17 -66.90 -0.21 0.22 16 27 C -0.13 -0.98 7.14 -25.92 -0.19 -1.17 16 28 C -0.14 -0.95 8.08 -25.92 -0.21 -1.16 16 29 C -0.13 -1.03 6.83 -25.92 -0.18 -1.21 16 30 H 0.02 0.18 8.05 -51.93 -0.42 -0.24 16 31 H 0.07 0.64 7.49 -51.93 -0.39 0.25 16 32 H 0.09 1.23 6.02 -51.93 -0.31 0.91 16 33 H 0.10 0.96 7.24 -51.93 -0.38 0.59 16 34 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.39 7.98 -51.93 -0.41 0.98 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.38 10.06 7.64 -40.82 -0.31 9.74 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.50 8.09 -51.92 -0.42 1.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -31.49 395.63 -11.18 -42.67 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -9.36 Total: 7.32 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.66 Total: -2.72 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -1.18 Total: -60.97 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.49 -11.18 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.093 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds