Wall clock time and date at job start Fri Apr 10 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99738 * 2 1 4 4 C 1.50702 * 109.47149 * 66.04567 * 3 2 1 5 5 O 1.21284 * 119.99695 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99918 * 179.97438 * 4 3 2 7 7 C 1.49214 * 126.06014 * 0.02562 * 6 4 3 8 8 C 1.50349 * 104.85868 * 172.93344 * 7 6 4 9 9 H 1.08996 * 110.05147 * 279.54004 * 8 7 6 10 10 C 1.50998 * 125.56828 * 144.33318 * 8 7 6 11 11 C 1.56403 * 101.59591 * 203.98021 * 10 8 7 12 12 C 1.55940 * 105.78889 * 25.01582 * 11 10 8 13 13 H 1.08991 * 110.49457 * 248.73828 * 12 11 10 14 14 N 1.46500 * 110.49139 * 126.20963 * 12 11 10 15 15 C 1.36936 * 120.00002 * 86.45356 * 14 12 11 16 16 H 1.08000 * 120.00127 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99625 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00460 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99721 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46952 * 60.00003 * 19 17 15 21 21 H 1.48505 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47242 * 300.00200 * 19 17 15 23 23 C 1.50299 * 104.15719 * 7.54219 * 12 11 10 24 24 H 1.09001 * 109.99862 * 80.48695 * 23 12 11 25 25 C 1.49702 * 126.05711 * 179.71535 * 6 4 3 26 26 C 1.46896 * 111.00153 * 236.04936 * 2 1 3 27 27 C 1.53786 * 113.61383 * 287.64344 * 26 2 1 28 28 C 1.53777 * 87.08329 * 220.02029 * 27 26 2 29 29 C 1.53777 * 113.61626 * 190.14924 * 26 2 1 30 30 H 1.08997 * 109.47020 * 53.57148 * 1 2 3 31 31 H 1.09004 * 109.47230 * 173.56316 * 1 2 3 32 32 H 1.08994 * 109.47355 * 293.56460 * 1 2 3 33 33 H 1.09003 * 109.46800 * 186.04576 * 3 2 1 34 34 H 1.08997 * 109.47008 * 306.04499 * 3 2 1 35 35 H 1.08999 * 110.36413 * 291.77883 * 7 6 4 36 36 H 1.09006 * 110.35864 * 54.09173 * 7 6 4 37 37 H 1.09001 * 111.00219 * 322.05909 * 10 8 7 38 38 H 1.09003 * 111.00015 * 85.86231 * 10 8 7 39 39 H 1.08997 * 110.18137 * 144.09989 * 11 10 8 40 40 H 1.09001 * 110.18559 * 265.85740 * 11 10 8 41 41 H 0.97001 * 120.00036 * 266.45322 * 14 12 11 42 42 H 0.96998 * 120.00342 * 180.02562 * 18 17 15 43 43 H 1.08993 * 110.84799 * 273.06054 * 25 6 4 44 44 H 1.09008 * 110.84240 * 36.67162 * 25 6 4 45 45 H 1.08999 * 112.85373 * 58.94713 * 26 2 1 46 46 H 1.09007 * 113.61151 * 334.57257 * 27 26 2 47 47 H 1.09002 * 113.61736 * 105.46414 * 27 26 2 48 48 H 1.08999 * 113.61268 * 270.88528 * 28 27 26 49 49 H 1.09001 * 113.61530 * 139.98022 * 28 27 26 50 50 H 1.09001 * 113.61425 * 254.52775 * 29 26 2 51 51 H 1.09003 * 113.61214 * 25.34316 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0188 3.3198 1.5237 7 6 2.7959 4.1826 0.5866 8 6 2.8028 5.5416 1.2296 9 1 1.8619 6.0543 1.0298 10 6 3.9471 6.5260 1.1905 11 6 3.6659 7.3858 2.4664 12 6 2.8412 6.4700 3.4218 13 1 1.8189 6.8366 3.5135 14 7 3.4786 6.3969 4.7389 15 6 3.2013 7.3450 5.6873 16 1 2.5131 8.1469 5.4642 17 6 3.8049 7.2753 6.9354 18 7 4.6439 6.2984 7.2071 19 14 3.4272 8.5690 8.2290 20 1 1.9736 8.5562 8.5321 21 1 4.1930 8.2706 9.4659 22 1 3.8144 9.9083 7.7174 23 6 2.8628 5.1250 2.7514 24 1 3.8053 4.6192 2.9610 25 6 1.7328 4.1207 2.7558 26 6 1.9955 -0.7659 -1.1376 27 6 1.8176 -2.2864 -0.9917 28 6 3.2248 -2.4299 -1.5950 29 6 3.5111 -1.0154 -1.0637 30 1 -0.3633 0.6102 -0.8268 31 1 -0.3634 -1.0212 -0.1152 32 1 -0.3634 0.4108 0.9419 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9273 -0.8309 35 1 3.8140 3.8076 0.4816 36 1 2.3044 4.2254 -0.3854 37 1 4.9060 6.0136 1.2682 38 1 3.9055 7.1379 0.2893 39 1 4.6044 7.6748 2.9394 40 1 3.0894 8.2725 2.2028 41 1 4.0970 5.6769 4.9392 42 1 5.0654 6.2495 8.0794 43 1 0.7668 4.6194 2.6787 44 1 1.7764 3.4924 3.6455 45 1 1.6635 -0.3765 -2.1000 46 1 1.7501 -2.6208 0.0437 47 1 1.0283 -2.6962 -1.6220 48 1 3.2287 -2.4966 -2.6829 49 1 3.8265 -3.2048 -1.1201 50 1 4.0892 -0.3991 -1.7522 51 1 3.9070 -1.0008 -0.0482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026284007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:08 Heat of formation + Delta-G solvation = 6.123008 kcal Electronic energy + Delta-G solvation = -27763.684471 eV Core-core repulsion = 24084.700059 eV Total energy + Delta-G solvation = -3678.984412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.71626 -40.50632 -39.42239 -36.80024 -35.83449 -35.06535 -32.67398 -31.37911 -29.87423 -28.93257 -27.25889 -26.77502 -26.17559 -24.89400 -24.34136 -23.07554 -21.42448 -20.49146 -20.21950 -20.12483 -19.10651 -18.04638 -17.65906 -17.06042 -16.63149 -16.39570 -16.24588 -15.92256 -15.69455 -15.43401 -15.22329 -14.84959 -14.77117 -14.41480 -14.03075 -13.73613 -13.45816 -13.29102 -13.19277 -13.13509 -13.01805 -12.77945 -12.65887 -12.58033 -12.55216 -12.46871 -12.19243 -12.16512 -11.80239 -11.76760 -11.59045 -11.42314 -11.35194 -11.09481 -10.99822 -10.92606 -10.66806 -9.70128 -9.28700 -8.98728 -7.93516 -5.21727 1.46287 1.49305 1.55159 1.64092 1.76657 2.56515 2.92986 3.03852 3.40499 3.54694 3.65535 3.70352 3.82579 3.94241 3.97972 4.05272 4.06492 4.20944 4.27086 4.30016 4.31527 4.45801 4.51758 4.53105 4.55515 4.60948 4.68480 4.70537 4.72874 4.77462 4.88750 4.95000 4.95662 4.98778 5.05162 5.07318 5.11238 5.12952 5.21243 5.24371 5.33814 5.38550 5.48496 5.52287 5.53955 5.65167 5.91611 6.20107 6.28662 6.54808 7.19391 7.34102 8.11455 8.33199 9.29931 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.002457 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.585891 B =11392.715796 C =11849.859864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.537 5.537 3 C 0.053 3.947 4 C 0.520 3.480 5 O -0.575 6.575 6 N -0.626 5.626 7 C 0.123 3.877 8 C -0.105 4.105 9 H 0.091 0.909 10 C -0.083 4.083 11 C -0.138 4.138 12 C 0.185 3.815 13 H 0.047 0.953 14 N -0.735 5.735 15 C -0.236 4.236 16 H 0.077 0.923 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.275 1.275 23 C -0.120 4.120 24 H 0.063 0.937 25 C 0.132 3.868 26 C 0.051 3.949 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.132 4.132 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -10.720 -26.725 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.078 4.078 4 C 0.310 3.690 5 O -0.454 6.454 6 N -0.362 5.362 7 C 0.002 3.998 8 C -0.125 4.125 9 H 0.110 0.890 10 C -0.121 4.121 11 C -0.178 4.178 12 C 0.076 3.924 13 H 0.065 0.935 14 N -0.375 5.375 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.201 1.201 23 C -0.140 4.140 24 H 0.082 0.918 25 C 0.010 3.990 26 C -0.057 4.057 27 C -0.167 4.167 28 C -0.171 4.171 29 C -0.170 4.170 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.114 0.886 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.191 -11.220 -25.791 28.436 hybrid contribution -0.202 0.795 1.193 1.448 sum -4.394 -10.425 -24.597 27.074 Atomic orbital electron populations 1.22383 0.86877 1.02074 1.00886 1.61863 1.08705 1.12139 1.43460 1.21897 1.03123 0.89705 0.93066 1.20936 0.78520 0.79763 0.89781 1.90665 1.41925 1.64293 1.48554 1.49955 1.55408 1.12097 1.18748 1.21496 0.97073 0.88507 0.92714 1.22157 1.01557 0.95366 0.93385 0.89026 1.21650 0.96660 0.96186 0.97562 1.23598 0.99946 0.98679 0.95609 1.20388 0.95142 0.92566 0.84271 0.93487 1.42709 1.52991 1.31093 1.10662 1.19592 1.20112 1.04200 0.92908 0.90541 1.25552 1.00479 1.00868 1.00186 1.69813 1.34774 1.35140 1.22558 0.85253 0.77353 0.79012 0.78412 1.20627 1.22476 1.20134 1.22298 0.98023 0.95463 0.98246 0.91844 1.21344 0.98026 0.92439 0.87217 1.23363 0.96596 0.94144 0.91570 1.22940 0.98247 0.94195 1.01320 1.22711 0.96270 0.96865 1.01282 1.22984 0.94530 0.97826 1.01658 0.94851 0.90806 0.92485 0.86352 0.89525 0.89638 0.87498 0.91442 0.88665 0.93636 0.91406 0.79803 0.94188 0.90858 0.93738 0.90229 0.90966 0.90701 0.88559 0.91040 0.89994 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.15 127.69 1.17 1.71 16 2 N -0.54 -11.21 4.44 -898.51 -3.99 -15.20 16 3 C 0.05 0.99 4.61 85.56 0.39 1.39 16 4 C 0.52 14.70 7.64 87.66 0.67 15.37 16 5 O -0.58 -21.88 14.64 -3.04 -0.04 -21.93 16 6 N -0.63 -16.29 3.42 -814.57 -2.79 -19.08 16 7 C 0.12 2.11 6.41 85.00 0.54 2.66 16 8 C -0.11 -2.20 2.76 -10.56 -0.03 -2.23 16 9 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 10 C -0.08 -1.75 6.72 31.13 0.21 -1.54 16 11 C -0.14 -4.28 6.74 32.80 0.22 -4.06 16 12 C 0.19 6.98 3.39 45.14 0.15 7.14 16 13 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 14 N -0.74 -37.01 5.12 -322.26 -1.65 -38.66 16 15 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 18 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 19 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 C -0.12 -3.79 2.42 -10.52 -0.03 -3.81 16 24 H 0.06 2.25 7.92 -2.39 -0.02 2.23 16 25 C 0.13 4.24 6.82 85.16 0.58 4.82 16 26 C 0.05 0.75 3.17 45.44 0.14 0.89 16 27 C -0.13 -1.82 7.14 31.12 0.22 -1.59 16 28 C -0.13 -1.48 8.08 31.12 0.25 -1.23 16 29 C -0.13 -1.75 6.83 31.12 0.21 -1.53 16 30 H 0.03 0.58 8.05 -2.39 -0.02 0.56 16 31 H 0.07 1.38 7.49 -2.38 -0.02 1.37 16 32 H 0.06 1.60 6.02 -2.39 -0.01 1.59 16 33 H 0.12 1.85 7.24 -2.39 -0.02 1.83 16 34 H 0.09 1.18 8.06 -2.39 -0.02 1.16 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.69 7.98 -2.39 -0.02 1.67 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.37 20.41 7.64 -92.71 -0.71 19.71 16 42 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 44 H 0.04 1.74 8.09 -2.38 -0.02 1.72 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.23 395.63 0.04 -73.19 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.18 Total: 31.72 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.02 Total: 1.57 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -8.15 Total: -133.32 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -73.23 0.04 -73.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026284007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.316 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds