Wall clock time and date at job start Fri Apr 10 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00033 * 2 1 4 4 O 1.21283 * 120.00095 * 184.33194 * 3 2 1 5 5 C 1.50705 * 119.99864 * 4.34073 * 3 2 1 6 6 H 1.08993 * 109.47325 * 19.70747 * 5 3 2 7 7 C 1.52998 * 109.46785 * 259.70903 * 5 3 2 8 8 C 1.53001 * 117.49935 * 123.23013 * 7 5 3 9 9 C 1.53004 * 117.50025 * 54.56993 * 7 5 3 10 10 N 1.46904 * 109.47226 * 139.71566 * 5 3 2 11 11 C 1.48528 * 111.00039 * 177.60145 * 10 5 3 12 12 C 1.54936 * 103.22720 * 159.71744 * 11 10 5 13 13 C 1.54592 * 102.92311 * 322.58454 * 12 11 10 14 14 C 1.47906 * 110.99515 * 294.99387 * 10 5 3 15 15 C 1.46496 * 119.99921 * 180.02562 * 2 1 3 16 16 H 1.09005 * 110.88687 * 176.12019 * 15 2 1 17 17 C 1.55163 * 111.00247 * 300.00153 * 15 2 1 18 18 C 1.54320 * 102.94378 * 82.57329 * 17 15 2 19 19 N 1.47026 * 107.26960 * 22.19354 * 18 17 15 20 20 C 1.36942 * 125.64616 * 181.02684 * 19 18 17 21 21 H 1.08000 * 120.00004 * 167.98413 * 20 19 18 22 22 C 1.38810 * 119.99597 * 347.98017 * 20 19 18 23 23 N 1.31622 * 119.99490 * 166.27226 * 22 20 19 24 24 Si 1.86799 * 120.00411 * 346.26925 * 22 20 19 25 25 H 1.48499 * 109.46910 * 185.89547 * 24 22 20 26 26 H 1.48494 * 109.47108 * 305.89288 * 24 22 20 27 27 H 1.48497 * 109.46916 * 65.89688 * 24 22 20 28 28 C 1.47423 * 108.70487 * 1.28561 * 19 18 17 29 29 H 1.09007 * 109.47311 * 264.71686 * 1 2 3 30 30 H 1.09003 * 109.47362 * 24.71279 * 1 2 3 31 31 H 1.09001 * 109.47283 * 144.71678 * 1 2 3 32 32 H 1.08996 * 115.55398 * 268.90212 * 7 5 3 33 33 H 1.09006 * 117.49511 * 0.02562 * 8 7 5 34 34 H 1.08999 * 117.50139 * 145.01933 * 8 7 5 35 35 H 1.08997 * 117.50387 * 214.98005 * 9 7 5 36 36 H 1.09006 * 117.49540 * 359.97438 * 9 7 5 37 37 H 1.09006 * 110.66693 * 278.15254 * 11 10 5 38 38 H 1.09005 * 110.66859 * 41.28016 * 11 10 5 39 39 H 1.09003 * 110.72180 * 204.22524 * 12 11 10 40 40 H 1.09001 * 110.87573 * 81.01478 * 12 11 10 41 41 H 1.09000 * 110.31113 * 263.04297 * 13 12 11 42 42 H 1.08993 * 110.39460 * 140.91194 * 13 12 11 43 43 H 1.08995 * 109.92064 * 333.51374 * 14 10 5 44 44 H 1.09002 * 109.91395 * 94.60701 * 14 10 5 45 45 H 1.08997 * 110.71843 * 324.20691 * 17 15 2 46 46 H 1.09004 * 110.71840 * 200.93765 * 17 15 2 47 47 H 1.08998 * 109.88054 * 262.77381 * 18 17 15 48 48 H 1.09004 * 109.88523 * 141.60836 * 18 17 15 49 49 H 0.96999 * 120.00114 * 354.87873 * 23 22 20 50 50 H 1.08999 * 110.36578 * 94.48684 * 28 19 18 51 51 H 1.09000 * 110.36901 * 216.80750 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3491 1.1687 -0.0793 5 6 1.3886 2.4704 0.0988 6 1 0.3938 2.2871 0.5047 7 6 1.2645 3.0941 -1.2928 8 6 -0.1434 3.4055 -1.8045 9 6 0.6463 2.2365 -2.3988 10 7 2.1171 3.3891 0.9839 11 6 1.4361 4.7068 1.0602 12 6 1.9928 5.3182 2.3705 13 6 2.0952 4.0929 3.3075 14 6 2.1531 2.8730 2.3695 15 6 2.1975 -1.2687 -0.0006 16 1 3.2717 -1.0972 -0.0694 17 6 1.8482 -2.1130 1.2535 18 6 0.5310 -2.8068 0.8473 19 7 0.4793 -2.8192 -0.6220 20 6 -0.5405 -3.3292 -1.3804 21 1 -0.5817 -3.1218 -2.4395 22 6 -1.5211 -4.1128 -0.7879 23 7 -2.6339 -4.3782 -1.4388 24 14 -1.2616 -4.7909 0.9333 25 1 -2.3800 -5.7044 1.2792 26 1 0.0209 -5.5377 0.9829 27 1 -1.2194 -3.6695 1.9058 28 6 1.7099 -2.1973 -1.1436 29 1 -0.3634 -0.0946 1.0233 30 1 -0.3634 0.9336 -0.4296 31 1 -0.3634 -0.8389 -0.5936 32 1 2.0650 3.7781 -1.5745 33 1 -0.9812 3.1663 -1.1495 34 1 -0.2690 4.2941 -2.4231 35 1 1.0398 2.3566 -3.4082 36 1 0.3283 1.2278 -2.1351 37 1 1.7008 5.3268 0.2036 38 1 0.3556 4.5784 1.1242 39 1 1.3012 6.0569 2.7757 40 1 2.9751 5.7610 2.2058 41 1 1.2172 4.0340 3.9507 42 1 3.0016 4.1501 3.9100 43 1 1.2938 2.2265 2.5474 44 1 3.0762 2.3172 2.5348 45 1 1.6943 -1.4704 2.1204 46 1 2.6270 -2.8496 1.4516 47 1 -0.3184 -2.2505 1.2435 48 1 0.5175 -3.8284 1.2273 49 1 -2.8014 -3.9664 -2.3010 50 1 2.4577 -2.9600 -1.3610 51 1 1.4906 -1.6141 -2.0380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033296168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:33 Heat of formation + Delta-G solvation = 51.647854 kcal Electronic energy + Delta-G solvation = -29673.966889 eV Core-core repulsion = 25996.956582 eV Total energy + Delta-G solvation = -3677.010307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.65502 -38.90932 -37.54703 -36.92768 -34.38610 -32.51138 -32.02504 -29.80535 -29.08065 -28.60267 -26.94287 -26.12311 -23.79394 -22.63422 -22.18034 -21.67537 -20.84281 -20.64316 -19.88321 -18.47816 -17.56412 -17.46819 -16.61835 -16.07096 -15.97956 -15.26242 -15.22685 -14.77176 -14.28733 -14.07373 -13.87379 -13.58999 -13.23574 -13.01336 -12.86965 -12.71738 -12.53293 -12.33650 -12.25888 -11.87111 -11.68252 -11.60267 -11.54626 -11.36761 -11.26962 -11.22851 -11.07023 -11.03769 -10.76604 -10.70137 -10.56017 -10.41306 -10.10511 -9.40449 -9.29779 -9.04322 -8.86591 -8.51186 -8.30608 -7.04916 -6.36987 -3.30835 2.74964 3.06074 3.36110 3.45848 3.61936 3.66884 3.86489 4.39174 4.45018 4.55907 4.64077 4.69940 4.77991 4.85714 4.88575 4.95601 5.06221 5.09287 5.15096 5.30008 5.30993 5.34201 5.38527 5.41956 5.50275 5.52918 5.55048 5.59704 5.61657 5.77009 5.79783 5.83360 5.86383 5.89057 5.98138 5.98856 6.02136 6.10145 6.19364 6.21670 6.36316 6.48453 6.54483 6.68366 6.70241 6.73813 6.96175 7.59187 7.69816 8.27238 8.42822 8.97250 9.47947 10.15362 11.13185 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004017 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.605340 B = 6968.713255 C = 7464.285694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.593 5.593 3 C 0.523 3.477 4 O -0.529 6.529 5 C 0.093 3.907 6 H 0.063 0.937 7 C -0.141 4.141 8 C -0.175 4.175 9 C -0.178 4.178 10 N -0.493 5.493 11 C 0.039 3.961 12 C -0.123 4.123 13 C -0.129 4.129 14 C 0.033 3.967 15 C 0.125 3.875 16 H 0.105 0.895 17 C -0.139 4.139 18 C 0.108 3.892 19 N -0.610 5.610 20 C -0.323 4.323 21 H 0.079 0.921 22 C -0.018 4.018 23 N -0.927 5.927 24 Si 1.072 2.928 25 H -0.303 1.303 26 H -0.298 1.298 27 H -0.289 1.289 28 C 0.126 3.874 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.046 0.954 48 H 0.029 0.971 49 H 0.262 0.738 50 H 0.036 0.964 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 18.675 6.523 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.326 5.326 3 C 0.310 3.690 4 O -0.404 6.404 5 C -0.019 4.019 6 H 0.081 0.919 7 C -0.159 4.159 8 C -0.212 4.212 9 C -0.215 4.215 10 N -0.218 5.218 11 C -0.088 4.088 12 C -0.161 4.161 13 C -0.167 4.167 14 C -0.094 4.094 15 C 0.021 3.979 16 H 0.123 0.877 17 C -0.178 4.178 18 C -0.016 4.016 19 N -0.338 5.338 20 C -0.450 4.450 21 H 0.097 0.903 22 C -0.218 4.218 23 N -0.568 5.568 24 Si 0.906 3.094 25 H -0.231 1.231 26 H -0.227 1.227 27 H -0.216 1.216 28 C -0.001 4.001 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.072 0.928 50 H 0.054 0.946 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.252 17.691 7.346 20.482 hybrid contribution -0.234 0.652 -0.853 1.099 sum 7.018 18.343 6.493 20.685 Atomic orbital electron populations 1.22321 0.79113 1.04588 1.02641 1.47703 1.07286 1.05089 1.72491 1.20239 0.87873 0.84504 0.76395 1.90643 1.13881 1.87002 1.48923 1.21420 0.95539 0.91134 0.93839 0.91904 1.22036 0.97436 1.03805 0.92665 1.23097 0.93942 1.00252 1.03945 1.23185 1.03423 0.96851 0.98045 1.64606 1.47934 1.02036 1.07194 1.23213 0.96476 0.90628 0.98516 1.22470 1.01749 0.97132 0.94730 1.22374 1.02277 0.94301 0.97740 1.22898 1.01853 0.97027 0.87664 1.22257 0.96751 0.82633 0.96273 0.87669 1.22946 0.98598 0.98809 0.97457 1.22038 0.95743 0.97521 0.86340 1.44969 1.18191 1.70732 0.99938 1.20145 1.01400 1.30170 0.93313 0.90344 1.25837 0.93425 0.97096 1.05408 1.70893 1.23673 1.45850 1.16411 0.83802 0.73625 0.76068 0.75894 1.23106 1.22703 1.21626 1.21963 0.89565 0.93688 0.94879 0.93362 0.92179 0.86291 0.86438 0.88783 0.88426 0.88373 0.87764 0.89765 0.93624 0.91046 0.90643 0.91512 0.90912 0.93922 0.89946 0.91225 0.90409 0.93577 0.95413 0.92791 0.94628 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 7.20 59.85 0.43 1.32 16 2 N -0.59 -9.64 2.87 -171.33 -0.49 -10.13 16 3 C 0.52 8.48 5.40 -10.98 -0.06 8.42 16 4 O -0.53 -10.21 16.23 5.56 0.09 -10.12 16 5 C 0.09 1.22 1.16 -68.86 -0.08 1.14 16 6 H 0.06 0.80 5.71 -51.93 -0.30 0.50 16 7 C -0.14 -1.68 4.36 -90.62 -0.39 -2.07 16 8 C -0.18 -1.76 10.02 -26.69 -0.27 -2.03 16 9 C -0.18 -2.17 9.36 -26.69 -0.25 -2.42 16 10 N -0.49 -6.15 4.91 -223.88 -1.10 -7.25 16 11 C 0.04 0.38 5.72 -1.90 -0.01 0.36 16 12 C -0.12 -1.00 7.06 -24.87 -0.18 -1.18 16 13 C -0.13 -1.14 6.93 -25.38 -0.18 -1.32 16 14 C 0.03 0.39 6.01 -2.75 -0.02 0.38 16 15 C 0.13 2.15 3.67 -65.66 -0.24 1.91 16 16 H 0.11 1.81 7.02 -51.93 -0.36 1.45 16 17 C -0.14 -2.34 6.48 -24.90 -0.16 -2.50 16 18 C 0.11 2.24 3.62 -3.06 -0.01 2.23 16 19 N -0.61 -13.94 1.81 -169.93 -0.31 -14.24 16 20 C -0.32 -8.72 10.08 -15.06 -0.15 -8.87 16 21 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 22 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 23 N -0.93 -28.15 13.70 55.49 0.76 -27.39 16 24 Si 1.07 26.17 24.52 -169.99 -4.17 22.00 16 25 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.30 -7.13 6.81 56.52 0.38 -6.74 16 27 H -0.29 -6.41 5.51 56.52 0.31 -6.10 16 28 C 0.13 2.46 6.39 -2.41 -0.02 2.45 16 29 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 30 H 0.06 0.83 4.34 -51.93 -0.23 0.60 16 31 H 0.12 2.32 5.10 -51.93 -0.27 2.05 16 32 H 0.12 1.44 8.11 -51.93 -0.42 1.01 16 33 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.10 1.46 5.61 -51.93 -0.29 1.17 16 37 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 38 H 0.05 0.42 8.02 -51.93 -0.42 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.04 0.51 7.65 -51.93 -0.40 0.11 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.05 0.98 5.69 -51.93 -0.30 0.69 16 48 H 0.03 0.63 3.75 -51.93 -0.19 0.43 16 49 H 0.26 7.86 8.73 -40.82 -0.36 7.50 16 50 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -31.23 373.36 -9.99 -41.22 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.72 Total: 3.06 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.68 Total: -2.77 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -1.14 Total: -59.01 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -4.17 Total: 22.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.23 -9.99 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.870 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds