Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99929 * 2 1 4 4 O 1.21277 * 119.99951 * 185.69955 * 3 2 1 5 5 C 1.50703 * 119.99996 * 5.69737 * 3 2 1 6 6 H 1.08995 * 109.46941 * 337.97060 * 5 3 2 7 7 C 1.53001 * 109.46665 * 97.96134 * 5 3 2 8 8 C 1.53003 * 117.50212 * 2.76636 * 7 5 3 9 9 C 1.52997 * 117.50406 * 294.13811 * 7 5 3 10 10 N 1.46897 * 109.47203 * 217.96082 * 5 3 2 11 11 C 1.48525 * 111.00049 * 288.15363 * 10 5 3 12 12 C 1.54943 * 103.22627 * 159.72242 * 11 10 5 13 13 C 1.54595 * 102.91922 * 322.58128 * 12 11 10 14 14 C 1.47901 * 110.99590 * 45.54887 * 10 5 3 15 15 C 1.46504 * 120.00030 * 180.02562 * 2 1 3 16 16 H 1.09001 * 110.88683 * 176.12046 * 15 2 1 17 17 C 1.55157 * 111.00051 * 299.99932 * 15 2 1 18 18 C 1.54331 * 102.94165 * 82.61290 * 17 15 2 19 19 N 1.47022 * 107.27147 * 22.19084 * 18 17 15 20 20 C 1.36932 * 125.64848 * 181.02319 * 19 18 17 21 21 H 1.07995 * 120.00128 * 179.81662 * 20 19 18 22 22 C 1.38811 * 119.99634 * 359.82255 * 20 19 18 23 23 N 1.31625 * 119.99862 * 211.50433 * 22 20 19 24 24 Si 1.86795 * 120.00317 * 31.50958 * 22 20 19 25 25 H 1.48504 * 109.46813 * 273.67183 * 24 22 20 26 26 H 1.48500 * 109.47204 * 33.67187 * 24 22 20 27 27 H 1.48507 * 109.47359 * 153.67475 * 24 22 20 28 28 C 1.47429 * 108.70215 * 1.28617 * 19 18 17 29 29 H 1.09001 * 109.47174 * 274.17416 * 1 2 3 30 30 H 1.08999 * 109.47296 * 34.17756 * 1 2 3 31 31 H 1.09002 * 109.47173 * 154.17327 * 1 2 3 32 32 H 1.09007 * 115.54469 * 148.46672 * 7 5 3 33 33 H 1.08998 * 117.49382 * 359.97438 * 8 7 5 34 34 H 1.09002 * 117.50142 * 145.01761 * 8 7 5 35 35 H 1.09000 * 117.49867 * 214.97703 * 9 7 5 36 36 H 1.08998 * 117.49873 * 359.97438 * 9 7 5 37 37 H 1.09005 * 110.66733 * 278.15048 * 11 10 5 38 38 H 1.08998 * 110.67187 * 41.28386 * 11 10 5 39 39 H 1.09001 * 110.72158 * 204.22456 * 12 11 10 40 40 H 1.08997 * 110.87825 * 81.00914 * 12 11 10 41 41 H 1.09002 * 110.30625 * 263.04315 * 13 12 11 42 42 H 1.09001 * 110.39093 * 140.91836 * 13 12 11 43 43 H 1.09000 * 109.91827 * 333.50352 * 14 10 5 44 44 H 1.09000 * 109.91632 * 94.80303 * 14 10 5 45 45 H 1.08992 * 110.72297 * 324.24757 * 17 15 2 46 46 H 1.09008 * 110.71464 * 200.97228 * 17 15 2 47 47 H 1.08996 * 109.88023 * 262.76801 * 18 17 15 48 48 H 1.09007 * 109.87816 * 141.60625 * 18 17 15 49 49 H 0.97003 * 119.99893 * 354.94725 * 23 22 20 50 50 H 1.09001 * 110.36372 * 94.48409 * 28 19 18 51 51 H 1.09001 * 110.36626 * 216.80829 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3471 1.1698 -0.1043 5 6 1.3909 2.4691 0.1296 6 1 0.3545 2.3246 -0.1755 7 6 1.4333 2.9388 1.5851 8 6 2.2349 2.0938 2.5772 9 6 0.7056 2.0842 2.6248 10 7 2.0180 3.4817 -0.7302 11 6 3.3272 3.9128 -0.1771 12 6 4.0467 4.5249 -1.4053 13 6 3.6089 3.5959 -2.5608 14 6 2.3085 2.9314 -2.0719 15 6 2.1975 -1.2688 -0.0006 16 1 3.2718 -1.0972 -0.0694 17 6 1.8483 -2.1130 1.2535 18 6 0.5316 -2.8076 0.8469 19 7 0.4803 -2.8203 -0.6224 20 6 -0.5388 -3.3310 -1.3811 21 1 -0.4829 -3.2894 -2.4588 22 6 -1.6438 -3.9020 -0.7648 23 7 -2.2856 -4.8911 -1.3499 24 14 -2.2201 -3.2667 0.8946 25 1 -1.4731 -3.9582 1.9759 26 1 -1.9722 -1.8050 0.9783 27 1 -3.6731 -3.5321 1.0489 28 6 1.7109 -2.1977 -1.1437 29 1 -0.3633 0.0748 1.0249 30 1 -0.3634 0.8502 -0.5773 31 1 -0.3634 -0.9250 -0.4477 32 1 1.4308 4.0191 1.7306 33 1 2.7318 1.2029 2.1929 34 1 2.7601 2.6180 3.3756 35 1 0.2248 2.6022 3.4546 36 1 0.1963 1.1875 2.2718 37 1 3.1879 4.6637 0.6007 38 1 3.8828 3.0575 0.2075 39 1 5.1283 4.4935 -1.2739 40 1 3.7106 5.5463 -1.5832 41 1 4.3721 2.8407 -2.7490 42 1 3.4208 4.1761 -3.4642 43 1 2.4442 1.8517 -2.0090 44 1 1.4920 3.1666 -2.7546 45 1 1.6937 -1.4704 2.1202 46 1 2.6274 -2.8492 1.4519 47 1 -0.3183 -2.2517 1.2427 48 1 0.5186 -3.8292 1.2271 49 1 -2.0326 -5.1724 -2.2431 50 1 2.4591 -2.9601 -1.3606 51 1 1.4915 -1.6148 -2.0382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033296170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = 37.849837 kcal Electronic energy + Delta-G solvation = -30221.808380 eV Core-core repulsion = 26544.199746 eV Total energy + Delta-G solvation = -3677.608634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.28848 -40.17194 -38.45701 -37.79736 -35.93066 -34.37349 -33.01615 -31.51187 -30.11967 -29.83325 -27.89505 -27.46953 -25.64184 -23.61368 -23.33697 -22.58421 -22.47018 -21.57326 -21.06893 -19.61409 -19.51116 -18.54988 -18.00235 -17.67970 -16.97105 -16.41100 -16.31371 -15.98256 -15.59107 -15.35574 -15.24311 -15.06810 -14.70674 -14.43384 -14.11742 -13.80466 -13.67788 -13.45471 -13.26929 -13.23802 -13.03814 -12.77454 -12.70616 -12.52425 -12.48762 -12.31714 -12.22655 -12.08766 -11.97055 -11.90077 -11.69601 -11.56390 -11.30547 -11.23961 -11.09640 -10.81899 -10.55085 -9.78887 -9.32863 -9.03532 -8.68931 -5.36544 1.42263 1.45607 1.51274 1.70655 1.90815 2.54879 2.74574 2.89560 2.96282 3.35726 3.46427 3.55520 3.69209 3.74401 3.79037 3.88631 3.94601 4.01742 4.08700 4.10614 4.22777 4.31011 4.33745 4.43972 4.46279 4.50662 4.54339 4.64435 4.70565 4.73175 4.79039 4.82412 4.84559 4.90449 4.92938 4.98414 5.02745 5.05818 5.07420 5.13876 5.16941 5.19298 5.28704 5.33112 5.51517 5.57567 5.78646 5.87853 6.08123 6.37200 6.82683 7.05963 7.47686 8.13239 8.83462 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.004365 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.473145 B = 6412.423155 C = 6938.313424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.590 5.590 3 C 0.501 3.499 4 O -0.565 6.565 5 C 0.083 3.917 6 H 0.108 0.892 7 C -0.138 4.138 8 C -0.181 4.181 9 C -0.171 4.171 10 N -0.488 5.488 11 C 0.022 3.978 12 C -0.116 4.116 13 C -0.123 4.123 14 C 0.026 3.974 15 C 0.132 3.868 16 H 0.109 0.891 17 C -0.123 4.123 18 C 0.104 3.896 19 N -0.617 5.617 20 C -0.326 4.326 21 H 0.043 0.957 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 1.098 2.902 25 H -0.279 1.279 26 H -0.250 1.250 27 H -0.311 1.311 28 C 0.129 3.871 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.026 0.974 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.039 0.961 48 H 0.025 0.975 49 H 0.249 0.751 50 H 0.038 0.962 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.385 20.564 7.501 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.322 5.322 3 C 0.290 3.710 4 O -0.445 6.445 5 C -0.029 4.029 6 H 0.126 0.874 7 C -0.156 4.156 8 C -0.218 4.218 9 C -0.208 4.208 10 N -0.211 5.211 11 C -0.105 4.105 12 C -0.154 4.154 13 C -0.161 4.161 14 C -0.102 4.102 15 C 0.027 3.973 16 H 0.127 0.873 17 C -0.162 4.162 18 C -0.020 4.020 19 N -0.345 5.345 20 C -0.454 4.454 21 H 0.061 0.939 22 C -0.264 4.264 23 N -0.591 5.591 24 Si 0.925 3.075 25 H -0.205 1.205 26 H -0.176 1.176 27 H -0.240 1.240 28 C 0.003 3.997 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.489 20.724 8.519 24.334 hybrid contribution 1.242 -1.450 -2.019 2.779 sum 10.732 19.274 6.501 22.998 Atomic orbital electron populations 1.22435 0.78869 1.05187 1.02466 1.47946 1.07450 1.05211 1.71565 1.21917 0.88210 0.86322 0.74555 1.90605 1.15152 1.87090 1.51667 1.21822 0.99567 0.86571 0.94959 0.87421 1.22069 1.06826 0.99352 0.87368 1.23101 0.94765 1.01762 1.02186 1.23227 0.94469 1.01894 1.01204 1.65277 1.23202 1.31060 1.01533 1.23490 0.88948 1.00117 0.97934 1.22440 1.00184 0.99256 0.93528 1.22295 0.95575 0.98729 0.99489 1.22995 0.98831 0.97097 0.91318 1.22119 0.96890 0.82959 0.95365 0.87289 1.22889 0.96863 0.98907 0.97503 1.21866 0.97587 0.98141 0.84449 1.44795 1.17949 1.70550 1.01231 1.19726 0.99260 1.36605 0.89806 0.93854 1.26895 0.96007 0.94667 1.08828 1.71046 1.50435 1.22454 1.15125 0.83516 0.74247 0.77314 0.72377 1.20544 1.17557 1.24014 1.21990 0.88564 0.93678 0.95476 0.91457 0.90588 0.89209 0.84794 0.90795 0.87081 0.86165 0.89234 0.89276 0.91988 0.90552 0.89887 0.92638 0.89784 0.95530 0.90047 0.89006 0.88624 0.94380 0.95716 0.94165 0.94392 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.61 7.80 127.77 1.00 2.61 16 2 N -0.59 -17.73 2.91 -814.39 -2.37 -20.10 16 3 C 0.50 14.26 2.79 87.66 0.24 14.51 16 4 O -0.57 -18.44 11.95 -3.02 -0.04 -18.48 16 5 C 0.08 1.97 2.50 44.17 0.11 2.08 16 6 H 0.11 2.54 5.66 -2.39 -0.01 2.53 16 7 C -0.14 -2.67 4.66 -10.79 -0.05 -2.72 16 8 C -0.18 -3.62 9.64 30.60 0.29 -3.33 16 9 C -0.17 -3.07 10.13 30.60 0.31 -2.76 16 10 N -0.49 -11.37 5.41 -862.24 -4.67 -16.04 16 11 C 0.02 0.48 5.15 86.65 0.45 0.92 16 12 C -0.12 -2.14 7.06 31.80 0.22 -1.92 16 13 C -0.12 -2.57 6.93 31.47 0.22 -2.35 16 14 C 0.03 0.63 6.18 86.45 0.53 1.17 16 15 C 0.13 4.21 3.66 46.46 0.17 4.38 16 16 H 0.11 3.44 7.02 -2.39 -0.02 3.43 16 17 C -0.12 -3.71 6.48 31.79 0.21 -3.50 16 18 C 0.10 4.08 3.83 86.73 0.33 4.41 16 19 N -0.62 -28.22 1.83 -691.53 -1.26 -29.48 16 20 C -0.33 -18.11 9.94 84.03 0.84 -17.27 16 21 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 22 C -0.07 -3.94 5.43 84.86 0.46 -3.48 16 23 N -0.95 -59.46 13.70 21.65 0.30 -59.17 16 24 Si 1.10 50.40 24.56 68.60 1.69 52.08 16 25 H -0.28 -12.06 6.61 99.48 0.66 -11.40 16 26 H -0.25 -9.77 5.98 99.48 0.60 -9.17 16 27 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 28 C 0.13 5.04 6.46 86.93 0.56 5.60 16 29 H 0.07 1.83 5.89 -2.39 -0.01 1.82 16 30 H 0.08 2.04 6.15 -2.39 -0.01 2.02 16 31 H 0.09 3.47 4.08 -2.39 -0.01 3.46 16 32 H 0.13 2.24 7.58 -2.38 -0.02 2.23 16 33 H 0.07 1.88 6.09 -2.39 -0.01 1.87 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.84 5.52 -2.39 -0.01 1.82 16 37 H 0.09 1.62 7.50 -2.38 -0.02 1.61 16 38 H 0.06 1.65 5.51 -2.39 -0.01 1.64 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.03 0.81 5.41 -2.39 -0.01 0.79 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 47 H 0.04 1.50 3.09 -2.39 -0.01 1.49 16 48 H 0.02 1.06 7.29 -2.38 -0.02 1.05 16 49 H 0.25 15.79 8.73 -92.71 -0.81 14.98 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.09 361.86 0.27 -65.82 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.73 Total: 27.00 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.90 Total: -1.64 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -8.01 Total: -124.78 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.04 Total: -18.48 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.69 Total: 52.08 kcal Total: -66.09 0.27 -65.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.669 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds