Wall clock time and date at job start Fri Apr 10 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48505 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47157 * 299.99743 * 3 2 1 6 6 H 1.48502 * 109.47214 * 59.99689 * 3 2 1 7 7 C 1.38817 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49574 * 0.02562 * 9 7 2 11 11 C 1.53941 * 86.11592 * 155.35839 * 10 9 7 12 12 C 1.47583 * 134.48923 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.87086 * 90.32551 * 12 9 7 14 14 C 1.53002 * 113.77114 * 318.94099 * 12 9 7 15 15 N 1.46494 * 109.47098 * 78.50316 * 14 12 9 16 16 C 1.34776 * 120.00121 * 179.97438 * 15 14 12 17 17 O 1.21278 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99861 * 180.02562 * 16 15 14 19 19 C 1.53128 * 109.52051 * 180.02562 * 18 16 15 20 20 C 1.53039 * 109.27651 * 182.44093 * 19 18 16 21 21 N 1.46845 * 109.52258 * 59.18029 * 20 19 18 22 22 C 1.46899 * 110.99993 * 174.15877 * 21 20 19 23 23 C 1.53003 * 109.47402 * 169.99581 * 22 21 20 24 24 C 1.53000 * 117.49792 * 175.00016 * 23 22 21 25 25 C 1.53002 * 60.02940 * 107.48056 * 24 23 22 26 26 C 1.46851 * 111.19675 * 298.25194 * 21 20 19 27 27 C 1.53040 * 109.51942 * 61.75086 * 26 21 20 28 28 H 0.96999 * 119.99876 * 0.02562 * 1 2 3 29 29 H 1.08996 * 113.76751 * 41.05860 * 10 9 7 30 30 H 1.09002 * 113.76907 * 269.65994 * 10 9 7 31 31 H 1.08998 * 113.74406 * 269.25870 * 11 10 9 32 32 H 1.09001 * 113.83634 * 137.96661 * 11 10 9 33 33 H 1.09001 * 109.47054 * 318.50478 * 14 12 9 34 34 H 1.08994 * 109.47184 * 198.50933 * 14 12 9 35 35 H 0.97004 * 120.00264 * 0.02562 * 15 14 12 36 36 H 1.08998 * 109.52691 * 300.12624 * 18 16 15 37 37 H 1.08996 * 109.50305 * 62.49860 * 19 18 16 38 38 H 1.09008 * 109.53337 * 302.39701 * 19 18 16 39 39 H 1.08998 * 109.46231 * 299.16358 * 20 19 18 40 40 H 1.09001 * 109.45050 * 179.18636 * 20 19 18 41 41 H 1.09011 * 109.47085 * 49.99469 * 22 21 20 42 42 H 1.09003 * 109.47583 * 289.99940 * 22 21 20 43 43 H 1.08999 * 115.55832 * 29.31633 * 23 22 21 44 44 H 1.09002 * 117.49833 * 214.98161 * 24 23 22 45 45 H 1.09002 * 117.49953 * 359.97438 * 24 23 22 46 46 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 47 47 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 48 48 H 1.08999 * 109.46049 * 181.76012 * 26 21 20 49 49 H 1.08998 * 109.46593 * 301.73165 * 26 21 20 50 50 H 1.09004 * 109.49735 * 180.88077 * 27 26 21 51 51 H 1.08991 * 109.50657 * 60.75940 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1034 -2.7574 -0.0004 11 6 0.3475 -4.0832 -0.6398 12 6 1.7201 -3.8102 0.0005 13 1 1.8326 -4.2367 0.9973 14 6 2.9024 -4.1221 -0.9192 15 7 4.1496 -3.7189 -0.2650 16 6 5.3286 -3.8999 -0.8923 17 8 5.3571 -4.3962 -1.9986 18 6 6.6117 -3.4856 -0.2191 19 6 7.7958 -3.7972 -1.1387 20 6 9.0994 -3.4308 -0.4256 21 7 9.2093 -4.1989 0.8212 22 6 10.5117 -3.9766 1.4633 23 6 10.4986 -4.5846 2.8673 24 6 11.8072 -4.5609 3.6596 25 6 10.6588 -3.6293 4.0526 26 6 8.1086 -3.8807 1.7397 27 6 6.7755 -4.2606 1.0912 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7164 -2.1394 -0.6564 30 1 -0.5280 -2.8726 0.9969 31 1 0.3603 -4.0628 -1.7295 32 1 -0.1583 -4.9608 -0.2372 33 1 2.7892 -3.5745 -1.8548 34 1 2.9297 -5.1920 -1.1256 35 1 4.1269 -3.3223 0.6199 36 1 6.5847 -2.4161 -0.0104 37 1 7.7070 -3.2155 -2.0562 38 1 7.7996 -4.8601 -1.3805 39 1 9.1011 -2.3651 -0.1969 40 1 9.9450 -3.6650 -1.0722 41 1 10.7046 -2.9059 1.5327 42 1 11.2947 -4.4490 0.8701 43 1 9.8453 -5.4469 3.0002 44 1 12.0148 -5.4076 4.3139 45 1 12.6776 -4.1125 3.1805 46 1 10.1109 -3.8631 4.9654 47 1 10.7735 -2.5681 3.8317 48 1 8.2348 -4.4415 2.6658 49 1 8.1150 -2.8128 1.9581 50 1 5.9577 -4.0099 1.7670 51 1 6.7629 -5.3308 0.8851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038903448.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:23 Heat of formation + Delta-G solvation = 37.187671 kcal Electronic energy + Delta-G solvation = -27700.205904 eV Core-core repulsion = 24022.568557 eV Total energy + Delta-G solvation = -3677.637348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.14358 -38.91347 -37.94627 -36.96568 -34.05368 -33.31110 -32.18430 -30.96788 -28.39417 -27.87444 -26.91505 -23.99770 -23.43005 -23.37890 -22.64089 -22.05607 -20.67347 -20.25686 -19.62830 -19.03982 -17.32758 -16.72514 -16.24930 -15.71656 -15.37212 -15.30179 -14.97190 -14.93279 -14.61704 -14.11039 -13.90120 -13.79739 -13.51285 -13.30762 -13.01395 -12.95020 -12.69167 -12.19298 -11.88258 -11.81772 -11.69473 -11.44927 -11.39414 -11.21205 -11.10657 -11.03032 -10.78859 -10.75892 -10.60670 -10.54641 -10.51184 -10.22628 -10.00142 -9.75538 -9.58703 -9.21485 -8.81853 -8.53506 -8.50200 -6.90643 -5.78181 -3.10440 3.00245 3.35625 3.40323 3.40372 3.43565 3.58478 3.65708 4.35142 4.41191 4.57920 4.59841 4.66592 4.72999 4.85680 5.02218 5.08512 5.12228 5.21057 5.25154 5.29245 5.33719 5.39129 5.40414 5.45832 5.53996 5.57128 5.61863 5.62215 5.71543 5.73115 5.76412 5.85886 5.89069 5.92056 5.98092 6.10799 6.12460 6.32427 6.33225 6.40847 6.62126 6.72960 6.87823 6.90779 6.93317 7.23919 7.40796 7.58324 7.94254 7.97138 8.61755 9.02838 9.69576 10.58262 11.38753 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.002911 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.990251 B = 9617.230781 C =10433.821595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.714 5.714 16 C 0.516 3.484 17 O -0.551 6.551 18 C -0.110 4.110 19 C -0.093 4.093 20 C 0.056 3.944 21 N -0.536 5.536 22 C 0.086 3.914 23 C -0.152 4.152 24 C -0.178 4.178 25 C -0.183 4.183 26 C 0.056 3.944 27 C -0.107 4.107 28 H 0.252 0.748 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.614 -9.822 5.769 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.363 5.363 16 C 0.302 3.698 17 O -0.430 6.430 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.072 4.072 21 N -0.261 5.261 22 C -0.041 4.041 23 C -0.170 4.170 24 C -0.215 4.215 25 C -0.220 4.220 26 C -0.072 4.072 27 C -0.145 4.145 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.235 0.765 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.053 0.947 50 H 0.091 0.909 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.602 -10.305 4.842 21.810 hybrid contribution 0.447 2.171 0.848 2.373 sum 19.049 -8.134 5.690 21.481 Atomic orbital electron populations 1.69825 1.04963 1.25121 1.56784 1.24760 0.95619 0.97402 1.02682 0.86128 0.78683 0.84128 0.77294 1.20611 1.21725 1.21792 1.18980 0.90142 0.81917 1.43441 0.90364 1.46083 1.02310 0.98602 1.85949 1.22199 0.87941 0.89627 0.96892 1.23764 0.96225 0.98945 1.00586 1.22491 0.92416 0.87590 0.95625 0.93368 1.21733 0.82505 0.98618 0.97298 1.45986 1.06106 1.62955 1.21292 1.20474 0.85122 0.78364 0.85884 1.90655 1.87532 1.44755 1.20021 1.21394 0.93403 1.01646 0.96701 1.21367 0.91106 1.03474 0.97187 1.22125 0.98707 0.95117 0.91201 1.62013 1.01876 1.57048 1.05181 1.21688 0.91712 0.97934 0.92799 1.22367 1.00852 1.01934 0.91860 1.22949 0.92493 1.02421 1.03655 1.23096 1.02798 0.96875 0.99243 1.22126 0.90242 0.99075 0.95714 1.21585 0.96903 1.01092 0.94912 0.93741 0.90833 0.95576 0.90528 0.92809 0.91107 0.92292 0.76450 0.88931 0.90772 0.90236 0.94801 0.90503 0.94779 0.90340 0.86853 0.88725 0.88889 0.88752 0.88956 0.89886 0.94707 0.90857 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.38 55.49 0.63 -26.32 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -5.80 10.51 -15.06 -0.16 -5.96 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 N -0.60 -14.64 3.58 -170.79 -0.61 -15.25 16 10 C 0.16 3.64 7.51 -2.98 -0.02 3.61 16 11 C -0.16 -2.86 7.86 -25.83 -0.20 -3.06 16 12 C 0.13 2.42 4.33 -66.88 -0.29 2.13 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.24 5.54 -4.04 -0.02 2.22 16 15 N -0.71 -11.95 5.43 -60.30 -0.33 -12.27 16 16 C 0.52 8.59 7.15 -10.98 -0.08 8.52 16 17 O -0.55 -11.02 15.98 5.56 0.09 -10.93 16 18 C -0.11 -1.42 2.59 -91.64 -0.24 -1.66 16 19 C -0.09 -1.14 4.68 -26.64 -0.12 -1.27 16 20 C 0.06 0.57 5.42 -3.83 -0.02 0.55 16 21 N -0.54 -5.30 4.81 -234.66 -1.13 -6.43 16 22 C 0.09 0.72 5.55 -3.82 -0.02 0.70 16 23 C -0.15 -1.15 4.25 -90.58 -0.38 -1.53 16 24 C -0.18 -1.16 10.25 -26.73 -0.27 -1.43 16 25 C -0.18 -1.28 10.18 -26.69 -0.27 -1.55 16 26 C 0.06 0.55 5.08 -3.83 -0.02 0.53 16 27 C -0.11 -1.17 5.26 -26.65 -0.14 -1.31 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 6.34 7.96 -40.82 -0.33 6.01 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.07 8.04 -51.92 -0.42 0.66 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.03 0.29 7.81 -51.92 -0.41 -0.12 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 0.92 7.31 -51.93 -0.38 0.54 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 48 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 49 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 51 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -31.35 400.04 -12.04 -43.39 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -9.33 Total: 4.73 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.36 Total: 0.15 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -1.43 Total: -60.29 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.35 -12.04 -43.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038903448.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.580 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds