Wall clock time and date at job start Fri Apr 10 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48505 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47157 * 299.99743 * 3 2 1 6 6 H 1.48502 * 109.47214 * 59.99689 * 3 2 1 7 7 C 1.38817 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49574 * 0.02562 * 9 7 2 11 11 C 1.53941 * 86.11592 * 155.35839 * 10 9 7 12 12 C 1.47583 * 134.48923 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.87086 * 90.32551 * 12 9 7 14 14 C 1.53002 * 113.77114 * 318.94099 * 12 9 7 15 15 N 1.46494 * 109.47098 * 78.50316 * 14 12 9 16 16 C 1.34776 * 120.00121 * 179.97438 * 15 14 12 17 17 O 1.21278 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99861 * 180.02562 * 16 15 14 19 19 C 1.53128 * 109.52051 * 180.02562 * 18 16 15 20 20 C 1.53039 * 109.27651 * 182.44093 * 19 18 16 21 21 N 1.46845 * 109.52258 * 59.18029 * 20 19 18 22 22 C 1.46899 * 110.99993 * 174.15877 * 21 20 19 23 23 C 1.53003 * 109.47402 * 169.99581 * 22 21 20 24 24 C 1.53000 * 117.49792 * 175.00016 * 23 22 21 25 25 C 1.53002 * 60.02940 * 107.48056 * 24 23 22 26 26 C 1.46851 * 111.19675 * 298.25194 * 21 20 19 27 27 C 1.53040 * 109.51942 * 61.75086 * 26 21 20 28 28 H 0.96999 * 119.99876 * 0.02562 * 1 2 3 29 29 H 1.08996 * 113.76751 * 41.05860 * 10 9 7 30 30 H 1.09002 * 113.76907 * 269.65994 * 10 9 7 31 31 H 1.08998 * 113.74406 * 269.25870 * 11 10 9 32 32 H 1.09001 * 113.83634 * 137.96661 * 11 10 9 33 33 H 1.09001 * 109.47054 * 318.50478 * 14 12 9 34 34 H 1.08994 * 109.47184 * 198.50933 * 14 12 9 35 35 H 0.97004 * 120.00264 * 0.02562 * 15 14 12 36 36 H 1.08998 * 109.52691 * 300.12624 * 18 16 15 37 37 H 1.08996 * 109.50305 * 62.49860 * 19 18 16 38 38 H 1.09008 * 109.53337 * 302.39701 * 19 18 16 39 39 H 1.08998 * 109.46231 * 299.16358 * 20 19 18 40 40 H 1.09001 * 109.45050 * 179.18636 * 20 19 18 41 41 H 1.09011 * 109.47085 * 49.99469 * 22 21 20 42 42 H 1.09003 * 109.47583 * 289.99940 * 22 21 20 43 43 H 1.08999 * 115.55832 * 29.31633 * 23 22 21 44 44 H 1.09002 * 117.49833 * 214.98161 * 24 23 22 45 45 H 1.09002 * 117.49953 * 359.97438 * 24 23 22 46 46 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 47 47 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 48 48 H 1.08999 * 109.46049 * 181.76012 * 26 21 20 49 49 H 1.08998 * 109.46593 * 301.73165 * 26 21 20 50 50 H 1.09004 * 109.49735 * 180.88077 * 27 26 21 51 51 H 1.08991 * 109.50657 * 60.75940 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1034 -2.7574 -0.0004 11 6 0.3475 -4.0832 -0.6398 12 6 1.7201 -3.8102 0.0005 13 1 1.8326 -4.2367 0.9973 14 6 2.9024 -4.1221 -0.9192 15 7 4.1496 -3.7189 -0.2650 16 6 5.3286 -3.8999 -0.8923 17 8 5.3571 -4.3962 -1.9986 18 6 6.6117 -3.4856 -0.2191 19 6 7.7958 -3.7972 -1.1387 20 6 9.0994 -3.4308 -0.4256 21 7 9.2093 -4.1989 0.8212 22 6 10.5117 -3.9766 1.4633 23 6 10.4986 -4.5846 2.8673 24 6 11.8072 -4.5609 3.6596 25 6 10.6588 -3.6293 4.0526 26 6 8.1086 -3.8807 1.7397 27 6 6.7755 -4.2606 1.0912 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7164 -2.1394 -0.6564 30 1 -0.5280 -2.8726 0.9969 31 1 0.3603 -4.0628 -1.7295 32 1 -0.1583 -4.9608 -0.2372 33 1 2.7892 -3.5745 -1.8548 34 1 2.9297 -5.1920 -1.1256 35 1 4.1269 -3.3223 0.6199 36 1 6.5847 -2.4161 -0.0104 37 1 7.7070 -3.2155 -2.0562 38 1 7.7996 -4.8601 -1.3805 39 1 9.1011 -2.3651 -0.1969 40 1 9.9450 -3.6650 -1.0722 41 1 10.7046 -2.9059 1.5327 42 1 11.2947 -4.4490 0.8701 43 1 9.8453 -5.4469 3.0002 44 1 12.0148 -5.4076 4.3139 45 1 12.6776 -4.1125 3.1805 46 1 10.1109 -3.8631 4.9654 47 1 10.7735 -2.5681 3.8317 48 1 8.2348 -4.4415 2.6658 49 1 8.1150 -2.8128 1.9581 50 1 5.9577 -4.0099 1.7670 51 1 6.7629 -5.3308 0.8851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038903448.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:22 Heat of formation + Delta-G solvation = 17.521583 kcal Electronic energy + Delta-G solvation = -27701.058690 eV Core-core repulsion = 24022.568557 eV Total energy + Delta-G solvation = -3678.490133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29141 -40.01265 -39.42504 -37.72511 -35.52823 -34.31779 -34.09170 -31.84104 -29.96290 -29.52632 -27.92810 -25.29427 -25.00258 -24.25719 -23.53159 -23.15610 -21.77003 -21.06199 -20.86437 -20.52015 -18.82048 -18.03436 -17.35464 -17.09859 -16.98924 -16.29202 -16.10062 -15.82835 -15.67271 -15.56689 -15.27291 -15.05369 -14.72226 -14.43567 -14.11510 -14.09511 -13.68959 -13.45435 -13.24400 -13.03105 -12.97598 -12.68645 -12.57977 -12.50401 -12.35371 -12.27802 -12.21792 -12.09876 -11.84177 -11.70465 -11.51778 -11.42757 -11.29627 -11.18028 -10.84822 -10.80340 -10.61408 -9.98707 -9.24910 -8.88197 -7.86797 -5.18264 1.42688 1.44287 1.52651 1.67285 2.26001 2.47708 2.80844 2.99549 3.33104 3.38961 3.61433 3.71746 3.81788 3.86747 3.99956 4.05133 4.10722 4.13800 4.25521 4.30700 4.35911 4.40243 4.44030 4.47498 4.61405 4.64764 4.66737 4.71367 4.76605 4.81377 4.85286 4.87865 4.92367 4.98036 5.05760 5.06140 5.09959 5.12742 5.17711 5.27656 5.30908 5.34351 5.34852 5.49997 5.62157 5.75711 5.98615 6.13154 6.16464 6.60088 6.95991 7.27869 7.65856 8.60753 9.30497 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.002911 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.990251 B = 9617.230781 C =10433.821595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.300 1.300 6 H -0.293 1.293 7 C -0.210 4.210 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.134 3.866 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.711 5.711 16 C 0.513 3.487 17 O -0.588 6.588 18 C -0.104 4.104 19 C -0.089 4.089 20 C 0.062 3.938 21 N -0.545 5.545 22 C 0.088 3.912 23 C -0.158 4.158 24 C -0.172 4.172 25 C -0.184 4.184 26 C 0.061 3.939 27 C -0.100 4.100 28 H 0.245 0.755 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.407 0.593 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.035 0.965 50 H 0.082 0.918 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.630 -10.869 7.039 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.338 4.338 8 H 0.103 0.897 9 N -0.357 5.357 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.090 0.910 14 C 0.007 3.993 15 N -0.361 5.361 16 C 0.301 3.699 17 O -0.468 6.468 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.066 4.066 21 N -0.270 5.270 22 C -0.039 4.039 23 C -0.176 4.176 24 C -0.209 4.209 25 C -0.221 4.221 26 C -0.067 4.067 27 C -0.138 4.138 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.243 0.757 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.113 0.887 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.651 -11.384 6.135 24.366 hybrid contribution -0.171 2.404 0.436 2.449 sum 20.481 -8.980 6.571 23.309 Atomic orbital electron populations 1.70006 1.06316 1.25081 1.59166 1.25518 0.96415 1.00523 1.04055 0.85184 0.78394 0.80422 0.76455 1.18893 1.22740 1.22033 1.19339 0.90685 0.83029 1.40774 0.89678 1.46438 1.03279 1.00033 1.85925 1.22169 0.87147 0.91779 0.96478 1.23564 0.95278 0.97848 1.00389 1.22653 0.93207 0.84541 0.96800 0.91000 1.21510 0.82917 0.99189 0.95676 1.45973 1.05810 1.62852 1.21467 1.21119 0.86019 0.77361 0.85407 1.90638 1.88074 1.46425 1.21698 1.21409 0.91460 1.02083 0.97534 1.21303 0.92131 1.02300 0.96991 1.22051 0.97726 0.95282 0.91494 1.62008 1.02657 1.57110 1.05216 1.21697 0.90871 0.98106 0.93213 1.22295 1.01747 1.01986 0.91606 1.23023 0.92263 1.02450 1.03167 1.23129 1.03112 0.96788 0.99074 1.22097 0.89468 0.99210 0.95936 1.21557 0.98147 1.00257 0.93861 0.94623 0.94391 0.95887 0.90556 0.88736 0.94327 0.90412 0.75718 0.88410 0.91877 0.91699 0.94482 0.89363 0.94680 0.89948 0.87359 0.88011 0.88330 0.88363 0.89077 0.88741 0.94703 0.89911 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.50 11.38 21.65 0.25 -57.25 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.21 -11.15 10.51 84.03 0.88 -10.27 16 8 H 0.09 4.29 7.80 -2.91 -0.02 4.27 16 9 N -0.63 -30.30 3.58 -694.26 -2.48 -32.78 16 10 C 0.15 6.86 7.51 86.48 0.65 7.51 16 11 C -0.13 -4.56 7.86 31.24 0.25 -4.32 16 12 C 0.13 4.85 4.33 45.08 0.20 5.05 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.13 4.61 5.54 86.38 0.48 5.09 16 15 N -0.71 -22.79 5.43 -463.08 -2.52 -25.30 16 16 C 0.51 16.66 7.15 87.66 0.63 17.29 16 17 O -0.59 -23.41 15.98 -3.02 -0.05 -23.46 16 18 C -0.10 -2.55 2.59 -11.46 -0.03 -2.58 16 19 C -0.09 -2.12 4.68 30.65 0.14 -1.97 16 20 C 0.06 1.16 5.42 86.33 0.47 1.63 16 21 N -0.54 -9.71 4.81 -896.32 -4.31 -14.02 16 22 C 0.09 1.29 5.55 86.30 0.48 1.77 16 23 C -0.16 -2.06 4.25 -10.77 -0.05 -2.10 16 24 C -0.17 -1.85 10.25 30.60 0.31 -1.54 16 25 C -0.18 -2.18 10.18 30.62 0.31 -1.87 16 26 C 0.06 1.05 5.08 86.33 0.44 1.49 16 27 C -0.10 -1.99 5.26 30.65 0.16 -1.83 16 28 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.04 2.00 7.16 -2.39 -0.02 1.98 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 32 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.41 12.07 7.96 -92.71 -0.74 11.33 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.73 8.04 -2.38 -0.02 1.71 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 41 H 0.03 0.51 7.81 -2.38 -0.02 0.49 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.11 1.54 7.31 -2.39 -0.02 1.52 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.09 1.11 8.03 -2.39 -0.02 1.09 16 48 H 0.09 1.45 6.02 -2.39 -0.01 1.43 16 49 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.08 1.49 7.67 -2.39 -0.02 1.47 16 51 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -68.44 400.04 -1.14 -69.57 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.15 Total: 25.96 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.79 Total: 9.71 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -9.06 Total: -129.36 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.44 -1.14 -69.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038903448.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.097 kcal (2) G-P(sol) polarization free energy of solvation -68.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds