Wall clock time and date at job start Fri Apr 10 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.06301 * 2 1 4 4 C 1.53992 * 109.92004 * 238.79272 * 2 1 3 5 5 H 1.08991 * 110.39456 * 120.46235 * 4 2 1 6 6 C 1.50704 * 110.30639 * 358.33845 * 4 2 1 7 7 O 1.21275 * 120.00305 * 312.82830 * 6 4 2 8 8 N 1.34783 * 119.99787 * 132.83555 * 6 4 2 9 9 C 1.46944 * 120.44294 * 174.70220 * 8 6 4 10 10 C 1.53591 * 108.52391 * 125.71619 * 9 8 6 11 11 H 1.08998 * 110.59663 * 172.17808 * 10 9 8 12 12 C 1.53368 * 109.19862 * 294.10262 * 10 9 8 13 13 C 1.54675 * 108.58854 * 60.06253 * 12 10 9 14 14 C 1.53011 * 109.71927 * 60.85020 * 13 12 10 15 15 C 1.53377 * 109.24824 * 299.33611 * 14 13 12 16 16 H 1.09001 * 111.08476 * 177.84777 * 15 14 13 17 17 C 1.46944 * 120.44224 * 354.67169 * 8 6 4 18 18 N 1.47565 * 107.76850 * 51.15802 * 10 9 8 19 19 C 1.36944 * 121.60958 * 120.45060 * 18 10 9 20 20 H 1.07998 * 119.99831 * 338.54077 * 19 18 10 21 21 C 1.38809 * 120.00004 * 158.53585 * 19 18 10 22 22 N 1.31620 * 119.99869 * 328.24734 * 21 19 18 23 23 Si 1.86800 * 120.00281 * 148.24628 * 21 19 18 24 24 H 1.48499 * 109.46752 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47319 * 119.99911 * 23 21 19 26 26 H 1.48502 * 109.47418 * 240.00316 * 23 21 19 27 27 C 1.54599 * 105.14264 * 239.42320 * 4 2 1 28 28 C 1.54938 * 102.91871 * 338.04310 * 27 4 2 29 29 N 1.47904 * 109.91432 * 121.20525 * 2 1 3 30 30 C 1.46900 * 110.99622 * 265.19759 * 29 2 1 31 31 H 1.09009 * 109.47139 * 190.17435 * 1 2 3 32 32 H 1.08996 * 109.47606 * 310.17862 * 1 2 3 33 33 H 1.09001 * 109.46903 * 70.18308 * 1 2 3 34 34 H 1.09006 * 109.63192 * 5.99925 * 9 8 6 35 35 H 1.09008 * 109.62878 * 245.42382 * 9 8 6 36 36 H 1.08996 * 109.50632 * 180.52809 * 12 10 9 37 37 H 1.09001 * 109.50199 * 300.64275 * 12 10 9 38 38 H 1.09005 * 109.51626 * 300.73594 * 13 12 10 39 39 H 1.08997 * 109.39070 * 180.88615 * 13 12 10 40 40 H 1.08999 * 109.51007 * 179.40229 * 14 13 12 41 41 H 1.09003 * 109.54556 * 59.28320 * 14 13 12 42 42 H 1.08995 * 109.62747 * 353.97976 * 17 8 6 43 43 H 1.09002 * 109.62042 * 114.35644 * 17 8 6 44 44 H 0.97003 * 120.00381 * 355.77828 * 22 21 19 45 45 H 1.09003 * 110.71900 * 96.39789 * 27 4 2 46 46 H 1.08996 * 110.72192 * 219.68347 * 27 4 2 47 47 H 1.09007 * 110.66662 * 155.84666 * 28 27 4 48 48 H 1.09000 * 110.66972 * 278.97840 * 28 27 4 49 49 H 1.09002 * 109.47190 * 302.48029 * 30 29 2 50 50 H 1.09001 * 109.47394 * 62.48241 * 30 29 2 51 51 H 1.09000 * 109.47047 * 182.48151 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0547 -0.7502 -1.2383 5 1 2.6710 -0.0906 -1.8490 6 6 0.9046 -1.2894 -2.0493 7 8 0.0018 -1.8846 -1.5003 8 7 0.8795 -1.1102 -3.3849 9 6 -0.1748 -1.7300 -4.1996 10 6 -0.8592 -0.6331 -5.0287 11 1 -1.5526 -1.0713 -5.7464 12 6 -1.5941 0.3274 -4.0856 13 6 -0.5617 0.9590 -3.1224 14 6 0.4794 1.7434 -3.9237 15 6 1.2082 0.7884 -4.8772 16 1 1.9323 1.3241 -5.4911 17 6 1.9056 -0.2919 -4.0458 18 7 0.1954 0.1296 -5.7243 19 6 0.2355 0.2169 -7.0904 20 1 -0.2684 -0.5237 -7.6938 21 6 0.9236 1.2572 -7.6995 22 7 0.9961 2.4321 -7.1106 23 14 1.7470 0.9897 -9.3548 24 1 1.5193 -0.4083 -9.8006 25 1 1.1700 1.9268 -10.3518 26 1 3.2056 1.2381 -9.2281 27 6 2.9060 -1.9118 -0.6761 28 6 3.2681 -1.4185 0.7473 29 7 2.0338 -0.7205 1.1894 30 6 2.3210 0.2123 2.2873 31 1 -0.3634 -1.0116 0.1815 32 1 -0.3634 0.6630 0.7851 33 1 -0.3633 0.3484 -0.9668 34 1 -0.9072 -2.2078 -3.5488 35 1 0.2657 -2.4716 -4.8661 36 1 -2.0896 1.1029 -4.6696 37 1 -2.3364 -0.2251 -3.5095 38 1 -0.0647 0.1725 -2.5546 39 1 -1.0731 1.6330 -2.4351 40 1 1.1989 2.1957 -3.2412 41 1 -0.0166 2.5246 -4.4999 42 1 2.5409 0.1761 -3.2940 43 1 2.5120 -0.9213 -4.6972 44 1 0.5179 2.5894 -6.2814 45 1 2.3214 -2.8306 -0.6289 46 1 3.8053 -2.0558 -1.2749 47 1 3.4888 -2.2616 1.4021 48 1 4.1097 -0.7267 0.7122 49 1 3.0444 0.9558 1.9525 50 1 1.4006 0.7115 2.5902 51 1 2.7313 -0.3383 3.1339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039596110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:31 Heat of formation + Delta-G solvation = 41.883786 kcal Electronic energy + Delta-G solvation = -30837.774631 eV Core-core repulsion = 27160.340922 eV Total energy + Delta-G solvation = -3677.433709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.28466 -39.15907 -37.40122 -34.21356 -33.13676 -32.59075 -31.88146 -31.20488 -30.20805 -27.35805 -26.29727 -25.60498 -24.95486 -23.55675 -22.05609 -21.56307 -21.23129 -20.76354 -18.95587 -18.51571 -17.47041 -16.78310 -15.80251 -15.48003 -15.25119 -14.96185 -14.63202 -14.40249 -14.10727 -13.87590 -13.59568 -13.53606 -13.21681 -12.93362 -12.76933 -12.55954 -12.37720 -12.15818 -12.09001 -11.82345 -11.66860 -11.62485 -11.42514 -11.16165 -11.11355 -11.00476 -10.84474 -10.71662 -10.39893 -10.32302 -10.27158 -10.14334 -9.88527 -9.66886 -9.36585 -9.06804 -8.54995 -8.45038 -7.93431 -6.86649 -6.19008 -3.21605 2.84230 3.32421 3.48664 3.48796 3.63942 3.84682 4.41387 4.50434 4.55948 4.71691 4.86712 5.06309 5.12819 5.16103 5.25204 5.27956 5.30343 5.42018 5.55675 5.59543 5.61740 5.63109 5.65710 5.68514 5.72385 5.74160 5.79510 5.85949 5.97101 6.04848 6.07936 6.09035 6.14853 6.23080 6.25131 6.34961 6.42065 6.50934 6.63391 6.68794 6.79415 6.81651 6.86533 6.93777 6.97094 7.08910 7.14874 7.81231 7.89223 8.48428 8.50584 9.00542 9.75704 10.22602 11.12873 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004211 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.866559 B = 6647.238194 C = 6855.193716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.085 3.915 3 H 0.054 0.946 4 C -0.128 4.128 5 H 0.099 0.901 6 C 0.525 3.475 7 O -0.538 6.538 8 N -0.592 5.592 9 C 0.102 3.898 10 C 0.154 3.846 11 H 0.077 0.923 12 C -0.124 4.124 13 C -0.144 4.144 14 C -0.125 4.125 15 C 0.155 3.845 16 H 0.108 0.892 17 C 0.089 3.911 18 N -0.585 5.585 19 C -0.350 4.350 20 H 0.061 0.939 21 C -0.022 4.022 22 N -0.911 5.911 23 Si 1.061 2.939 24 H -0.292 1.292 25 H -0.295 1.295 26 H -0.290 1.290 27 C -0.106 4.106 28 C 0.036 3.964 29 N -0.513 5.513 30 C 0.017 3.983 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.273 0.727 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.046 0.954 49 H 0.026 0.974 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -4.874 13.878 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 H 0.072 0.928 4 C -0.150 4.150 5 H 0.117 0.883 6 C 0.314 3.686 7 O -0.417 6.417 8 N -0.325 5.325 9 C -0.022 4.022 10 C 0.046 3.954 11 H 0.095 0.905 12 C -0.163 4.163 13 C -0.181 4.181 14 C -0.165 4.165 15 C 0.047 3.953 16 H 0.126 0.874 17 C -0.035 4.035 18 N -0.307 5.307 19 C -0.478 4.478 20 H 0.079 0.921 21 C -0.224 4.224 22 N -0.552 5.552 23 Si 0.891 3.109 24 H -0.219 1.219 25 H -0.223 1.223 26 H -0.217 1.217 27 C -0.144 4.144 28 C -0.092 4.092 29 N -0.237 5.237 30 C -0.132 4.132 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.045 0.955 50 H 0.087 0.913 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.591 -4.851 13.120 14.722 hybrid contribution -0.353 0.194 0.754 0.855 sum 4.238 -4.656 13.874 15.236 Atomic orbital electron populations 1.22430 0.92938 1.04336 1.01756 1.22187 0.97564 0.94837 0.87806 0.92790 1.22422 0.96681 0.99039 0.96867 0.88317 1.19910 0.86922 0.79837 0.81942 1.90642 1.38089 1.43186 1.69745 1.48211 1.28733 1.49601 1.05925 1.22191 0.90257 0.96046 0.93684 1.21197 0.90350 0.91302 0.92543 0.90490 1.22224 0.97126 0.99403 0.97539 1.22588 0.97492 1.00137 0.97928 1.22005 0.97854 0.98734 0.97869 1.21178 0.92230 0.91189 0.90709 0.87443 1.22527 0.90196 0.94452 0.96368 1.44499 1.24709 1.59404 1.02103 1.19982 1.37043 1.09800 0.80970 0.92073 1.25657 1.01165 0.91243 1.04372 1.70760 1.44436 1.19703 1.20340 0.83599 0.76889 0.74795 0.75605 1.21857 1.22286 1.21708 1.22411 0.99028 0.97854 0.95129 1.23232 0.91475 0.98505 0.95950 1.64749 1.26055 1.26379 1.06560 1.22512 1.00744 0.95135 0.94832 0.88707 0.94301 0.91088 0.89856 0.91911 0.92522 0.93524 0.88774 0.94685 0.93825 0.91783 0.90703 0.91468 0.91462 0.89860 0.90465 0.89778 0.93620 0.95517 0.91285 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.03 37.16 0.30 -2.05 16 2 C 0.08 1.12 3.08 -66.64 -0.21 0.91 16 3 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 4 C -0.13 -1.72 3.09 -90.41 -0.28 -2.00 16 5 H 0.10 1.24 5.21 -51.93 -0.27 0.97 16 6 C 0.52 8.50 3.30 -10.98 -0.04 8.47 16 7 O -0.54 -9.96 12.79 5.56 0.07 -9.89 16 8 N -0.59 -10.05 1.65 -172.53 -0.28 -10.33 16 9 C 0.10 1.84 5.91 -3.49 -0.02 1.82 16 10 C 0.15 3.09 3.58 -66.85 -0.24 2.85 16 11 H 0.08 1.56 8.01 -51.93 -0.42 1.14 16 12 C -0.12 -2.37 5.72 -25.66 -0.15 -2.52 16 13 C -0.14 -2.63 4.40 -25.84 -0.11 -2.75 16 14 C -0.13 -2.44 5.35 -26.53 -0.14 -2.59 16 15 C 0.15 3.22 2.47 -67.09 -0.17 3.06 16 16 H 0.11 2.57 5.90 -51.93 -0.31 2.26 16 17 C 0.09 1.52 5.75 -3.74 -0.02 1.50 16 18 N -0.59 -13.39 2.44 -155.71 -0.38 -13.77 16 19 C -0.35 -9.12 9.59 -15.06 -0.14 -9.26 16 20 H 0.06 1.63 8.00 -52.49 -0.42 1.21 16 21 C -0.02 -0.59 4.66 -17.43 -0.08 -0.67 16 22 N -0.91 -25.55 12.24 55.49 0.68 -24.87 16 23 Si 1.06 24.11 30.02 -169.99 -5.10 19.01 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.11 -1.22 6.60 -24.87 -0.16 -1.38 16 28 C 0.04 0.37 6.56 -1.90 -0.01 0.36 16 29 N -0.51 -6.20 5.18 -230.78 -1.20 -7.40 16 30 C 0.02 0.16 9.41 60.06 0.57 0.73 16 31 H 0.09 1.62 6.18 -51.92 -0.32 1.30 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.15 3.78 -51.93 -0.20 0.95 16 34 H 0.08 1.48 6.98 -51.93 -0.36 1.12 16 35 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.64 1.15 -52.45 -0.06 1.58 16 39 H 0.03 0.62 7.82 -51.93 -0.41 0.21 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.42 6.59 -51.93 -0.34 1.08 16 42 H 0.08 1.09 5.09 -51.93 -0.26 0.83 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.27 7.62 5.39 -40.82 -0.22 7.40 16 45 H 0.08 1.09 7.81 -51.93 -0.41 0.69 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.42 8.00 -51.93 -0.42 0.00 16 49 H 0.03 0.24 7.99 -51.93 -0.42 -0.17 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -28.97 356.15 -10.00 -38.97 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.24 Total: 6.44 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.91 Total: -3.53 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -1.18 Total: -56.37 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.10 Total: 19.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.97 -10.00 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039596110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.854 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds