Wall clock time and date at job start Fri Apr 10 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.06301 * 2 1 4 4 C 1.53992 * 109.92004 * 238.79272 * 2 1 3 5 5 H 1.08991 * 110.39456 * 120.46235 * 4 2 1 6 6 C 1.50704 * 110.30639 * 358.33845 * 4 2 1 7 7 O 1.21275 * 120.00305 * 312.82830 * 6 4 2 8 8 N 1.34783 * 119.99787 * 132.83555 * 6 4 2 9 9 C 1.46944 * 120.44294 * 174.70220 * 8 6 4 10 10 C 1.53591 * 108.52391 * 125.71619 * 9 8 6 11 11 H 1.08998 * 110.59663 * 172.17808 * 10 9 8 12 12 C 1.53368 * 109.19862 * 294.10262 * 10 9 8 13 13 C 1.54675 * 108.58854 * 60.06253 * 12 10 9 14 14 C 1.53011 * 109.71927 * 60.85020 * 13 12 10 15 15 C 1.53377 * 109.24824 * 299.33611 * 14 13 12 16 16 H 1.09001 * 111.08476 * 177.84777 * 15 14 13 17 17 C 1.46944 * 120.44224 * 354.67169 * 8 6 4 18 18 N 1.47565 * 107.76850 * 51.15802 * 10 9 8 19 19 C 1.36944 * 121.60958 * 120.45060 * 18 10 9 20 20 H 1.07998 * 119.99831 * 338.54077 * 19 18 10 21 21 C 1.38809 * 120.00004 * 158.53585 * 19 18 10 22 22 N 1.31620 * 119.99869 * 328.24734 * 21 19 18 23 23 Si 1.86800 * 120.00281 * 148.24628 * 21 19 18 24 24 H 1.48499 * 109.46752 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47319 * 119.99911 * 23 21 19 26 26 H 1.48502 * 109.47418 * 240.00316 * 23 21 19 27 27 C 1.54599 * 105.14264 * 239.42320 * 4 2 1 28 28 C 1.54938 * 102.91871 * 338.04310 * 27 4 2 29 29 N 1.47904 * 109.91432 * 121.20525 * 2 1 3 30 30 C 1.46900 * 110.99622 * 265.19759 * 29 2 1 31 31 H 1.09009 * 109.47139 * 190.17435 * 1 2 3 32 32 H 1.08996 * 109.47606 * 310.17862 * 1 2 3 33 33 H 1.09001 * 109.46903 * 70.18308 * 1 2 3 34 34 H 1.09006 * 109.63192 * 5.99925 * 9 8 6 35 35 H 1.09008 * 109.62878 * 245.42382 * 9 8 6 36 36 H 1.08996 * 109.50632 * 180.52809 * 12 10 9 37 37 H 1.09001 * 109.50199 * 300.64275 * 12 10 9 38 38 H 1.09005 * 109.51626 * 300.73594 * 13 12 10 39 39 H 1.08997 * 109.39070 * 180.88615 * 13 12 10 40 40 H 1.08999 * 109.51007 * 179.40229 * 14 13 12 41 41 H 1.09003 * 109.54556 * 59.28320 * 14 13 12 42 42 H 1.08995 * 109.62747 * 353.97976 * 17 8 6 43 43 H 1.09002 * 109.62042 * 114.35644 * 17 8 6 44 44 H 0.97003 * 120.00381 * 355.77828 * 22 21 19 45 45 H 1.09003 * 110.71900 * 96.39789 * 27 4 2 46 46 H 1.08996 * 110.72192 * 219.68347 * 27 4 2 47 47 H 1.09007 * 110.66662 * 155.84666 * 28 27 4 48 48 H 1.09000 * 110.66972 * 278.97840 * 28 27 4 49 49 H 1.09002 * 109.47190 * 302.48029 * 30 29 2 50 50 H 1.09001 * 109.47394 * 62.48241 * 30 29 2 51 51 H 1.09000 * 109.47047 * 182.48151 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0547 -0.7502 -1.2383 5 1 2.6710 -0.0906 -1.8490 6 6 0.9046 -1.2894 -2.0493 7 8 0.0018 -1.8846 -1.5003 8 7 0.8795 -1.1102 -3.3849 9 6 -0.1748 -1.7300 -4.1996 10 6 -0.8592 -0.6331 -5.0287 11 1 -1.5526 -1.0713 -5.7464 12 6 -1.5941 0.3274 -4.0856 13 6 -0.5617 0.9590 -3.1224 14 6 0.4794 1.7434 -3.9237 15 6 1.2082 0.7884 -4.8772 16 1 1.9323 1.3241 -5.4911 17 6 1.9056 -0.2919 -4.0458 18 7 0.1954 0.1296 -5.7243 19 6 0.2355 0.2169 -7.0904 20 1 -0.2684 -0.5237 -7.6938 21 6 0.9236 1.2572 -7.6995 22 7 0.9961 2.4321 -7.1106 23 14 1.7470 0.9897 -9.3548 24 1 1.5193 -0.4083 -9.8006 25 1 1.1700 1.9268 -10.3518 26 1 3.2056 1.2381 -9.2281 27 6 2.9060 -1.9118 -0.6761 28 6 3.2681 -1.4185 0.7473 29 7 2.0338 -0.7205 1.1894 30 6 2.3210 0.2123 2.2873 31 1 -0.3634 -1.0116 0.1815 32 1 -0.3634 0.6630 0.7851 33 1 -0.3633 0.3484 -0.9668 34 1 -0.9072 -2.2078 -3.5488 35 1 0.2657 -2.4716 -4.8661 36 1 -2.0896 1.1029 -4.6696 37 1 -2.3364 -0.2251 -3.5095 38 1 -0.0647 0.1725 -2.5546 39 1 -1.0731 1.6330 -2.4351 40 1 1.1989 2.1957 -3.2412 41 1 -0.0166 2.5246 -4.4999 42 1 2.5409 0.1761 -3.2940 43 1 2.5120 -0.9213 -4.6972 44 1 0.5179 2.5894 -6.2814 45 1 2.3214 -2.8306 -0.6289 46 1 3.8053 -2.0558 -1.2749 47 1 3.4888 -2.2616 1.4021 48 1 4.1097 -0.7267 0.7122 49 1 3.0444 0.9558 1.9525 50 1 1.4006 0.7115 2.5902 51 1 2.7313 -0.3383 3.1339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039596110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:30 Heat of formation + Delta-G solvation = 25.418734 kcal Electronic energy + Delta-G solvation = -30838.488609 eV Core-core repulsion = 27160.340922 eV Total energy + Delta-G solvation = -3678.147687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.62412 -40.39482 -38.68151 -35.84137 -34.74325 -33.97371 -33.05019 -32.31441 -31.94923 -28.73857 -27.69351 -26.97862 -25.84957 -25.30147 -23.35370 -23.17329 -22.55749 -21.79659 -20.52429 -20.02091 -18.76703 -18.28136 -16.95339 -16.74055 -16.57986 -16.18903 -15.97966 -15.85994 -15.56297 -15.37530 -15.15091 -14.74252 -14.59896 -14.31440 -14.11393 -13.99198 -13.76117 -13.45078 -13.29985 -13.10685 -12.86929 -12.80710 -12.66220 -12.53973 -12.32763 -12.30126 -12.12116 -12.03615 -11.97214 -11.91622 -11.84727 -11.56309 -11.51605 -11.28714 -11.05209 -10.44504 -10.33958 -9.52487 -9.37892 -8.67974 -8.23574 -5.24163 1.56321 1.62812 1.67666 1.85012 1.97488 2.67331 2.99759 3.18150 3.35802 3.38396 3.56547 3.69450 3.90703 3.98686 4.04884 4.07802 4.10779 4.21499 4.25234 4.30217 4.40423 4.45428 4.47879 4.53208 4.59484 4.62286 4.67865 4.71388 4.74828 4.78566 4.82825 4.86762 4.89147 4.94484 4.99123 5.02505 5.05038 5.06646 5.14103 5.17921 5.27112 5.31389 5.45309 5.58434 5.61528 5.87625 5.93595 6.12282 6.44678 6.49034 7.06805 7.18952 7.80996 8.29027 9.05743 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004211 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.866559 B = 6647.238194 C = 6855.193716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.085 3.915 3 H 0.066 0.934 4 C -0.127 4.127 5 H 0.113 0.887 6 C 0.526 3.474 7 O -0.560 6.560 8 N -0.594 5.594 9 C 0.112 3.888 10 C 0.149 3.851 11 H 0.067 0.933 12 C -0.120 4.120 13 C -0.138 4.138 14 C -0.117 4.117 15 C 0.152 3.848 16 H 0.076 0.924 17 C 0.099 3.901 18 N -0.600 5.600 19 C -0.353 4.353 20 H 0.049 0.951 21 C -0.066 4.066 22 N -0.937 5.937 23 Si 1.108 2.892 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.285 1.285 27 C -0.103 4.103 28 C 0.040 3.960 29 N -0.532 5.532 30 C 0.016 3.984 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.263 0.737 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.065 0.935 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.472 -5.492 15.625 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 H 0.084 0.916 4 C -0.149 4.149 5 H 0.130 0.870 6 C 0.317 3.683 7 O -0.440 6.440 8 N -0.327 5.327 9 C -0.012 4.012 10 C 0.042 3.958 11 H 0.085 0.915 12 C -0.160 4.160 13 C -0.176 4.176 14 C -0.157 4.157 15 C 0.045 3.955 16 H 0.094 0.906 17 C -0.024 4.024 18 N -0.323 5.323 19 C -0.483 4.483 20 H 0.067 0.933 21 C -0.264 4.264 22 N -0.580 5.580 23 Si 0.935 3.065 24 H -0.205 1.205 25 H -0.227 1.227 26 H -0.211 1.211 27 C -0.142 4.142 28 C -0.087 4.087 29 N -0.257 5.257 30 C -0.132 4.132 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.118 0.882 47 H 0.113 0.887 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.084 0.916 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.538 -5.489 14.903 17.175 hybrid contribution -1.060 0.357 0.271 1.151 sum 5.478 -5.132 15.174 16.929 Atomic orbital electron populations 1.22294 0.94576 1.02877 1.01097 1.22153 0.96249 0.95597 0.88347 0.91592 1.22498 0.95691 1.00000 0.96671 0.86971 1.20452 0.87332 0.79126 0.81398 1.90652 1.39237 1.44097 1.69964 1.48227 1.28443 1.49689 1.06305 1.21956 0.90631 0.95076 0.93558 1.21301 0.90051 0.91799 0.92692 0.91487 1.22162 0.97610 0.98705 0.97485 1.22596 0.96985 1.00458 0.97548 1.21901 0.98339 0.97722 0.97708 1.21158 0.91487 0.92196 0.90661 0.90561 1.22376 0.89921 0.93329 0.96811 1.44654 1.26200 1.59862 1.01570 1.20140 1.36475 1.08926 0.82716 0.93333 1.26751 1.01870 0.90839 1.06920 1.70845 1.45777 1.20673 1.20718 0.82942 0.76146 0.75141 0.72296 1.20473 1.22680 1.21119 1.22442 0.99192 0.96182 0.96351 1.23284 0.91255 0.99068 0.95125 1.64709 1.27420 1.27027 1.06539 1.22557 1.00959 0.95187 0.94510 0.91080 0.93408 0.92613 0.89454 0.91887 0.94957 0.92076 0.87326 0.93931 0.91346 0.95257 0.87335 0.91506 0.92525 0.91764 0.88233 0.88691 0.91772 0.94517 0.91641 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.03 71.98 0.58 -3.67 16 2 C 0.09 2.00 3.08 45.06 0.14 2.14 16 3 H 0.07 1.41 7.70 -2.39 -0.02 1.39 16 4 C -0.13 -3.00 3.09 -10.66 -0.03 -3.03 16 5 H 0.11 2.33 5.21 -2.39 -0.01 2.32 16 6 C 0.53 15.99 3.30 87.66 0.29 16.28 16 7 O -0.56 -20.01 12.79 -3.01 -0.04 -20.05 16 8 N -0.59 -19.20 1.65 -818.16 -1.35 -20.55 16 9 C 0.11 3.96 5.91 86.49 0.51 4.47 16 10 C 0.15 6.04 3.58 45.11 0.16 6.20 16 11 H 0.07 2.80 8.01 -2.39 -0.02 2.78 16 12 C -0.12 -4.67 5.72 31.29 0.18 -4.49 16 13 C -0.14 -4.97 4.40 31.17 0.14 -4.83 16 14 C -0.12 -4.55 5.35 30.72 0.16 -4.39 16 15 C 0.15 6.33 2.47 44.95 0.11 6.44 16 16 H 0.08 3.70 5.90 -2.39 -0.01 3.68 16 17 C 0.10 3.23 5.75 86.33 0.50 3.72 16 18 N -0.60 -27.92 2.44 -646.54 -1.58 -29.50 16 19 C -0.35 -18.82 9.59 84.03 0.81 -18.02 16 20 H 0.05 2.65 8.00 -2.91 -0.02 2.63 16 21 C -0.07 -3.57 4.66 84.86 0.40 -3.18 16 22 N -0.94 -53.83 12.24 21.65 0.27 -53.57 16 23 Si 1.11 49.20 30.02 68.60 2.06 51.26 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 C -0.10 -2.04 6.60 31.80 0.21 -1.83 16 28 C 0.04 0.67 6.56 86.65 0.57 1.24 16 29 N -0.53 -11.22 5.18 -884.05 -4.58 -15.80 16 30 C 0.02 0.26 9.41 127.69 1.20 1.46 16 31 H 0.07 2.35 6.18 -2.38 -0.01 2.34 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.71 3.78 -2.39 -0.01 1.70 16 34 H 0.09 3.03 6.98 -2.38 -0.02 3.01 16 35 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.11 3.63 1.15 -3.41 0.00 3.63 16 39 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.03 1.33 6.59 -2.39 -0.02 1.31 16 42 H 0.11 2.79 5.09 -2.39 -0.01 2.78 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.26 15.24 5.39 -92.71 -0.50 14.74 16 45 H 0.06 1.54 7.81 -2.39 -0.02 1.52 16 46 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.06 0.87 8.00 -2.39 -0.02 0.85 16 49 H 0.04 0.52 7.99 -2.39 -0.02 0.50 16 50 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -63.82 356.15 1.88 -61.94 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 1.19 Total: 27.76 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.91 Total: -1.49 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -7.25 Total: -119.43 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.04 Total: -20.05 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.06 Total: 51.26 kcal Total: -63.82 1.88 -61.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039596110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.359 kcal (2) G-P(sol) polarization free energy of solvation -63.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds