Wall clock time and date at job start Fri Apr 10 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.62649 * 2 1 4 4 C 1.54318 * 110.70822 * 236.89436 * 2 1 3 5 5 N 1.47446 * 107.23110 * 219.33301 * 4 2 1 6 6 C 1.46895 * 110.99838 * 236.74015 * 5 4 2 7 7 C 1.47838 * 108.57070 * 359.00958 * 5 4 2 8 8 C 1.54916 * 104.79542 * 24.09510 * 7 5 4 9 9 H 1.08996 * 110.98529 * 81.02199 * 8 7 5 10 10 C 1.50693 * 110.99151 * 204.84081 * 8 7 5 11 11 O 1.21282 * 120.00140 * 112.26459 * 10 8 7 12 12 N 1.34784 * 120.00006 * 292.26972 * 10 8 7 13 13 C 1.46944 * 120.44153 * 180.02562 * 12 10 8 14 14 C 1.53595 * 108.52729 * 125.74719 * 13 12 10 15 15 H 1.08997 * 110.59659 * 172.77469 * 14 13 12 16 16 C 1.53361 * 108.69200 * 294.36654 * 14 13 12 17 17 C 1.53007 * 109.27767 * 60.31098 * 16 14 13 18 18 C 1.53005 * 109.80345 * 60.55774 * 17 16 14 19 19 C 1.53376 * 109.25012 * 299.42557 * 18 17 16 20 20 H 1.09002 * 110.59429 * 177.53874 * 19 18 17 21 21 C 1.46943 * 120.43845 * 359.72093 * 12 10 8 22 22 N 1.47571 * 107.98469 * 56.38584 * 19 18 17 23 23 C 1.36928 * 121.61128 * 122.22547 * 22 19 18 24 24 H 1.08001 * 120.00212 * 206.99713 * 23 22 19 25 25 C 1.38815 * 120.00331 * 27.00381 * 23 22 19 26 26 N 1.31620 * 119.99396 * 18.49554 * 25 23 22 27 27 Si 1.86795 * 120.00106 * 198.49771 * 25 23 22 28 28 H 1.48502 * 109.46988 * 59.99942 * 27 25 23 29 29 H 1.48500 * 109.46916 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47524 * 299.99781 * 27 25 23 31 31 H 1.09009 * 109.47223 * 181.64997 * 1 2 3 32 32 H 1.08998 * 109.47770 * 301.64987 * 1 2 3 33 33 H 1.08997 * 109.47417 * 61.65769 * 1 2 3 34 34 H 1.08997 * 109.88831 * 338.73757 * 4 2 1 35 35 H 1.09000 * 109.89206 * 99.92848 * 4 2 1 36 36 H 1.08994 * 109.47644 * 59.87337 * 6 5 4 37 37 H 1.09000 * 109.47377 * 179.87913 * 6 5 4 38 38 H 1.09008 * 109.47286 * 299.87210 * 6 5 4 39 39 H 1.08998 * 110.37997 * 142.92116 * 7 5 4 40 40 H 1.09002 * 110.37486 * 265.26671 * 7 5 4 41 41 H 1.09000 * 109.62766 * 245.46079 * 13 12 10 42 42 H 1.09007 * 109.63004 * 5.84594 * 13 12 10 43 43 H 1.09002 * 109.50366 * 180.25166 * 16 14 13 44 44 H 1.09000 * 109.50765 * 300.36771 * 16 14 13 45 45 H 1.09003 * 109.41748 * 180.65830 * 17 16 14 46 46 H 1.09004 * 109.41416 * 300.45422 * 17 16 14 47 47 H 1.09006 * 109.50663 * 59.35329 * 18 17 16 48 48 H 1.08993 * 109.51353 * 179.49127 * 18 17 16 49 49 H 1.08997 * 109.62480 * 353.94626 * 21 12 10 50 50 H 1.09002 * 109.61966 * 114.51257 * 21 12 10 51 51 H 0.97002 * 119.99510 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0756 -0.7884 -1.2092 5 7 3.2490 -1.5489 -0.7412 6 6 4.4406 -1.2190 -1.5344 7 6 3.4651 -1.2477 0.6899 8 6 2.0785 -0.7966 1.2130 9 1 1.4460 -1.6563 1.4338 10 6 2.2204 0.0913 2.4223 11 8 1.9178 1.2637 2.3527 12 7 2.6838 -0.4174 3.5812 13 6 2.8256 0.4395 4.7665 14 6 2.0589 -0.2064 5.9302 15 1 2.2455 0.3331 6.8587 16 6 0.5623 -0.2022 5.5953 17 6 0.3291 -1.0063 4.3146 18 6 0.7884 -2.4514 4.5189 19 6 2.2861 -2.4641 4.8491 20 1 2.6277 -3.4811 5.0419 21 6 3.0477 -1.8378 3.6781 22 7 2.4987 -1.6112 6.0345 23 6 3.0755 -2.1000 7.1761 24 1 2.8447 -1.6530 8.1318 25 6 3.9571 -3.1699 7.1052 26 7 4.5215 -3.4825 5.9580 27 14 4.3423 -4.1659 8.6378 28 1 3.0908 -4.7665 9.1653 29 1 5.3039 -5.2452 8.2980 30 1 4.9379 -3.2781 9.6684 31 1 -0.3634 -1.0273 0.0296 32 1 -0.3634 0.5392 0.8748 33 1 -0.3634 0.4879 -0.9044 34 1 1.3133 -1.4737 -1.5796 35 1 2.3721 -0.0980 -1.9988 36 1 4.6536 -0.1539 -1.4444 37 1 5.2918 -1.7921 -1.1669 38 1 4.2606 -1.4664 -2.5806 39 1 3.7984 -2.1402 1.2195 40 1 4.1930 -0.4443 0.8030 41 1 3.8797 0.5308 5.0284 42 1 2.4138 1.4266 4.5562 43 1 0.0046 -0.6543 6.4155 44 1 0.2253 0.8238 5.4473 45 1 -0.7326 -0.9950 4.0680 46 1 0.8946 -0.5584 3.4975 47 1 0.2304 -2.8977 5.3422 48 1 0.6118 -3.0219 3.6072 49 1 2.7785 -2.3485 2.7535 50 1 4.1198 -1.9299 3.8517 51 1 5.1378 -4.2300 5.9085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039914327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:45 Heat of formation + Delta-G solvation = 20.017275 kcal Electronic energy + Delta-G solvation = -30587.152046 eV Core-core repulsion = 26908.770134 eV Total energy + Delta-G solvation = -3678.381912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.92767 -39.01695 -37.34694 -33.90675 -33.29423 -32.98614 -32.00242 -30.28399 -30.01442 -27.14484 -26.76726 -25.58296 -24.86772 -23.52375 -21.92332 -21.46954 -21.25202 -20.35815 -18.96623 -18.25808 -17.43942 -16.06686 -15.77232 -15.65089 -14.90067 -14.70251 -14.51663 -14.25649 -13.99820 -13.76325 -13.48458 -13.41402 -13.09870 -12.84403 -12.78713 -12.74532 -12.55007 -12.20107 -12.14057 -11.93047 -11.71945 -11.37708 -11.26243 -11.06173 -10.93048 -10.89898 -10.82326 -10.71465 -10.58322 -10.35825 -10.19341 -10.11218 -10.03841 -9.59213 -9.50299 -9.17802 -8.66831 -8.39509 -7.76527 -6.65389 -5.89659 -3.28972 2.98122 3.34089 3.40303 3.41639 3.47832 4.00328 4.42229 4.44520 4.65130 4.82639 5.10826 5.16920 5.22236 5.27351 5.30701 5.32407 5.39919 5.51246 5.56005 5.66956 5.71306 5.73555 5.76480 5.78569 5.84359 5.87280 5.91473 5.94996 6.01612 6.09565 6.20962 6.25466 6.34949 6.36162 6.41657 6.46926 6.52102 6.60247 6.67031 6.73459 6.82703 6.86281 6.94964 7.01736 7.09762 7.24509 7.49187 7.71231 8.01402 8.31696 8.61597 9.09039 9.71133 10.32725 11.19023 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.004614 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.451365 B = 6067.088314 C = 6918.215846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.087 0.913 4 C 0.044 3.956 5 N -0.532 5.532 6 C 0.019 3.981 7 C 0.053 3.947 8 C -0.115 4.115 9 H 0.108 0.892 10 C 0.522 3.478 11 O -0.560 6.560 12 N -0.586 5.586 13 C 0.100 3.900 14 C 0.154 3.846 15 H 0.077 0.923 16 C -0.121 4.121 17 C -0.139 4.139 18 C -0.134 4.134 19 C 0.177 3.823 20 H 0.116 0.884 21 C 0.099 3.901 22 N -0.579 5.579 23 C -0.247 4.247 24 H 0.066 0.934 25 C 0.005 3.995 26 N -0.902 5.902 27 Si 0.903 3.097 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.031 0.969 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 3.594 -12.161 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.105 0.895 4 C -0.084 4.084 5 N -0.255 5.255 6 C -0.129 4.129 7 C -0.075 4.075 8 C -0.137 4.137 9 H 0.126 0.874 10 C 0.311 3.689 11 O -0.440 6.440 12 N -0.317 5.317 13 C -0.024 4.024 14 C 0.046 3.954 15 H 0.095 0.905 16 C -0.160 4.160 17 C -0.177 4.177 18 C -0.173 4.173 19 C 0.070 3.930 20 H 0.134 0.866 21 C -0.025 4.025 22 N -0.300 5.300 23 C -0.377 4.377 24 H 0.084 0.916 25 C -0.194 4.194 26 N -0.546 5.546 27 Si 0.733 3.267 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.105 0.895 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.273 3.513 -12.247 13.438 hybrid contribution 0.461 0.183 0.950 1.072 sum -3.812 3.695 -11.296 12.482 Atomic orbital electron populations 1.21696 0.93944 1.01831 1.02049 1.22215 0.96838 0.99659 0.92585 0.89476 1.22992 0.93348 0.95476 0.96603 1.63624 1.04229 1.55090 1.02582 1.22549 0.93193 0.98862 0.98309 1.23128 0.95112 1.00865 0.88415 1.22530 0.98589 0.99073 0.93504 0.87366 1.19969 0.77089 0.87962 0.83922 1.90635 1.51766 1.17196 1.84362 1.48246 1.61971 1.11642 1.09869 1.22225 1.00782 0.93655 0.85755 1.21216 0.91511 0.87431 0.95291 0.90488 1.21905 0.98179 0.98289 0.97664 1.22093 0.99040 0.96866 0.99660 1.22148 0.99998 0.95609 0.99541 1.21030 0.89300 0.97606 0.85101 0.86606 1.22436 1.02100 0.78499 0.99416 1.44359 1.69424 1.03370 1.12808 1.19119 1.19114 1.13883 0.85553 0.91601 1.24933 0.96346 1.01290 0.96814 1.69930 1.30346 1.29927 1.24440 0.86356 0.77637 0.79916 0.82769 1.21144 1.21657 1.21008 0.92516 0.91983 0.92634 0.90189 0.92703 0.95525 0.91191 0.91397 0.88699 0.93180 0.91866 0.90517 0.92705 0.93523 0.94976 0.89771 0.92769 0.93749 0.91572 0.89503 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.13 37.16 0.34 -1.25 16 2 C -0.09 -1.20 2.66 -88.80 -0.24 -1.43 16 3 H 0.09 1.26 7.40 -51.93 -0.38 0.88 16 4 C 0.04 0.49 6.50 -2.83 -0.02 0.47 16 5 N -0.53 -6.53 5.44 -239.52 -1.30 -7.83 16 6 C 0.02 0.20 9.12 60.06 0.55 0.75 16 7 C 0.05 0.72 5.52 -2.30 -0.01 0.71 16 8 C -0.12 -1.66 1.80 -89.63 -0.16 -1.82 16 9 H 0.11 1.55 7.42 -51.93 -0.39 1.16 16 10 C 0.52 9.10 4.38 -10.99 -0.05 9.05 16 11 O -0.56 -11.08 15.11 5.56 0.08 -11.00 16 12 N -0.59 -10.75 1.66 -172.56 -0.29 -11.03 16 13 C 0.10 1.93 5.89 -3.49 -0.02 1.91 16 14 C 0.15 3.08 3.61 -66.85 -0.24 2.84 16 15 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 16 C -0.12 -2.24 5.58 -26.54 -0.15 -2.38 16 17 C -0.14 -2.50 5.55 -26.73 -0.15 -2.64 16 18 C -0.13 -2.50 5.57 -26.53 -0.15 -2.65 16 19 C 0.18 3.74 2.64 -67.11 -0.18 3.56 16 20 H 0.12 2.79 5.91 -51.93 -0.31 2.48 16 21 C 0.10 1.87 5.02 -3.76 -0.02 1.85 16 22 N -0.58 -13.20 2.54 -155.72 -0.40 -13.60 16 23 C -0.25 -6.29 9.73 -15.06 -0.15 -6.44 16 24 H 0.07 1.68 7.90 -52.49 -0.41 1.26 16 25 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16 26 N -0.90 -23.47 10.73 55.49 0.60 -22.87 16 27 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 31 H 0.06 0.61 8.13 -51.92 -0.42 0.19 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.84 7.82 -51.93 -0.41 0.43 16 35 H 0.05 0.55 7.58 -51.93 -0.39 0.16 16 36 H 0.03 0.27 8.11 -51.93 -0.42 -0.15 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.09 1.33 6.52 -51.93 -0.34 0.99 16 40 H 0.05 0.72 7.67 -51.93 -0.40 0.33 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.45 6.99 -51.92 -0.36 1.08 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 1.53 2.50 -52.42 -0.13 1.40 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 1.11 4.55 -51.93 -0.24 0.87 16 50 H 0.09 1.89 7.74 -51.93 -0.40 1.49 16 51 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -27.10 368.05 -10.30 -37.40 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.78 Total: 5.25 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.73 Total: 2.55 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -1.39 Total: -55.34 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.10 -10.30 -37.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039914327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.415 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds