Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.62649 * 2 1 4 4 C 1.54318 * 110.70822 * 236.89436 * 2 1 3 5 5 N 1.47446 * 107.23110 * 219.33301 * 4 2 1 6 6 C 1.46895 * 110.99838 * 236.74015 * 5 4 2 7 7 C 1.47838 * 108.57070 * 359.00958 * 5 4 2 8 8 C 1.54916 * 104.79542 * 24.09510 * 7 5 4 9 9 H 1.08996 * 110.98529 * 81.02199 * 8 7 5 10 10 C 1.50693 * 110.99151 * 204.84081 * 8 7 5 11 11 O 1.21282 * 120.00140 * 112.26459 * 10 8 7 12 12 N 1.34784 * 120.00006 * 292.26972 * 10 8 7 13 13 C 1.46944 * 120.44153 * 180.02562 * 12 10 8 14 14 C 1.53595 * 108.52729 * 125.74719 * 13 12 10 15 15 H 1.08997 * 110.59659 * 172.77469 * 14 13 12 16 16 C 1.53361 * 108.69200 * 294.36654 * 14 13 12 17 17 C 1.53007 * 109.27767 * 60.31098 * 16 14 13 18 18 C 1.53005 * 109.80345 * 60.55774 * 17 16 14 19 19 C 1.53376 * 109.25012 * 299.42557 * 18 17 16 20 20 H 1.09002 * 110.59429 * 177.53874 * 19 18 17 21 21 C 1.46943 * 120.43845 * 359.72093 * 12 10 8 22 22 N 1.47571 * 107.98469 * 56.38584 * 19 18 17 23 23 C 1.36928 * 121.61128 * 122.22547 * 22 19 18 24 24 H 1.08001 * 120.00212 * 206.99713 * 23 22 19 25 25 C 1.38815 * 120.00331 * 27.00381 * 23 22 19 26 26 N 1.31620 * 119.99396 * 18.49554 * 25 23 22 27 27 Si 1.86795 * 120.00106 * 198.49771 * 25 23 22 28 28 H 1.48502 * 109.46988 * 59.99942 * 27 25 23 29 29 H 1.48500 * 109.46916 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47524 * 299.99781 * 27 25 23 31 31 H 1.09009 * 109.47223 * 181.64997 * 1 2 3 32 32 H 1.08998 * 109.47770 * 301.64987 * 1 2 3 33 33 H 1.08997 * 109.47417 * 61.65769 * 1 2 3 34 34 H 1.08997 * 109.88831 * 338.73757 * 4 2 1 35 35 H 1.09000 * 109.89206 * 99.92848 * 4 2 1 36 36 H 1.08994 * 109.47644 * 59.87337 * 6 5 4 37 37 H 1.09000 * 109.47377 * 179.87913 * 6 5 4 38 38 H 1.09008 * 109.47286 * 299.87210 * 6 5 4 39 39 H 1.08998 * 110.37997 * 142.92116 * 7 5 4 40 40 H 1.09002 * 110.37486 * 265.26671 * 7 5 4 41 41 H 1.09000 * 109.62766 * 245.46079 * 13 12 10 42 42 H 1.09007 * 109.63004 * 5.84594 * 13 12 10 43 43 H 1.09002 * 109.50366 * 180.25166 * 16 14 13 44 44 H 1.09000 * 109.50765 * 300.36771 * 16 14 13 45 45 H 1.09003 * 109.41748 * 180.65830 * 17 16 14 46 46 H 1.09004 * 109.41416 * 300.45422 * 17 16 14 47 47 H 1.09006 * 109.50663 * 59.35329 * 18 17 16 48 48 H 1.08993 * 109.51353 * 179.49127 * 18 17 16 49 49 H 1.08997 * 109.62480 * 353.94626 * 21 12 10 50 50 H 1.09002 * 109.61966 * 114.51257 * 21 12 10 51 51 H 0.97002 * 119.99510 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0756 -0.7884 -1.2092 5 7 3.2490 -1.5489 -0.7412 6 6 4.4406 -1.2190 -1.5344 7 6 3.4651 -1.2477 0.6899 8 6 2.0785 -0.7966 1.2130 9 1 1.4460 -1.6563 1.4338 10 6 2.2204 0.0913 2.4223 11 8 1.9178 1.2637 2.3527 12 7 2.6838 -0.4174 3.5812 13 6 2.8256 0.4395 4.7665 14 6 2.0589 -0.2064 5.9302 15 1 2.2455 0.3331 6.8587 16 6 0.5623 -0.2022 5.5953 17 6 0.3291 -1.0063 4.3146 18 6 0.7884 -2.4514 4.5189 19 6 2.2861 -2.4641 4.8491 20 1 2.6277 -3.4811 5.0419 21 6 3.0477 -1.8378 3.6781 22 7 2.4987 -1.6112 6.0345 23 6 3.0755 -2.1000 7.1761 24 1 2.8447 -1.6530 8.1318 25 6 3.9571 -3.1699 7.1052 26 7 4.5215 -3.4825 5.9580 27 14 4.3423 -4.1659 8.6378 28 1 3.0908 -4.7665 9.1653 29 1 5.3039 -5.2452 8.2980 30 1 4.9379 -3.2781 9.6684 31 1 -0.3634 -1.0273 0.0296 32 1 -0.3634 0.5392 0.8748 33 1 -0.3634 0.4879 -0.9044 34 1 1.3133 -1.4737 -1.5796 35 1 2.3721 -0.0980 -1.9988 36 1 4.6536 -0.1539 -1.4444 37 1 5.2918 -1.7921 -1.1669 38 1 4.2606 -1.4664 -2.5806 39 1 3.7984 -2.1402 1.2195 40 1 4.1930 -0.4443 0.8030 41 1 3.8797 0.5308 5.0284 42 1 2.4138 1.4266 4.5562 43 1 0.0046 -0.6543 6.4155 44 1 0.2253 0.8238 5.4473 45 1 -0.7326 -0.9950 4.0680 46 1 0.8946 -0.5584 3.4975 47 1 0.2304 -2.8977 5.3422 48 1 0.6118 -3.0219 3.6072 49 1 2.7785 -2.3485 2.7535 50 1 4.1198 -1.9299 3.8517 51 1 5.1378 -4.2300 5.9085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039914327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = 5.474109 kcal Electronic energy + Delta-G solvation = -30587.782685 eV Core-core repulsion = 26908.770134 eV Total energy + Delta-G solvation = -3679.012551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.35912 -40.24619 -38.75625 -35.56721 -34.67083 -34.29844 -33.53359 -32.04030 -31.18970 -28.58717 -27.83921 -27.08115 -26.07680 -25.15378 -23.35096 -22.97800 -22.56110 -21.46564 -20.31218 -19.93555 -18.87852 -17.63206 -17.23392 -16.81001 -16.58895 -16.09136 -15.80973 -15.71906 -15.31326 -15.15308 -14.81408 -14.65735 -14.49917 -14.34976 -14.15227 -13.96476 -13.76579 -13.70520 -13.48359 -13.20898 -13.01962 -12.82574 -12.70130 -12.48667 -12.41236 -12.30761 -12.11931 -11.93467 -11.86586 -11.84147 -11.71603 -11.70577 -11.53862 -11.15117 -11.12241 -10.73659 -10.52122 -9.40889 -9.33975 -8.44301 -7.83285 -5.23956 1.49995 1.52946 1.57196 1.58127 2.04648 2.54640 2.98534 3.31366 3.39226 3.50418 3.61073 3.66198 4.02388 4.12103 4.14956 4.17231 4.23383 4.26491 4.34948 4.40478 4.46322 4.49218 4.50217 4.57552 4.64180 4.69831 4.75885 4.78171 4.83453 4.84553 4.89282 4.98528 4.99566 5.04415 5.05347 5.08946 5.15060 5.22330 5.26985 5.31865 5.41255 5.47506 5.51104 5.62166 5.69169 5.86167 5.86779 6.05503 6.41236 6.54353 7.16206 7.18971 7.84882 8.44031 9.22026 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.004614 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.451365 B = 6067.088314 C = 6918.215846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.068 0.932 4 C 0.048 3.952 5 N -0.537 5.537 6 C 0.018 3.982 7 C 0.058 3.942 8 C -0.113 4.113 9 H 0.116 0.884 10 C 0.525 3.475 11 O -0.581 6.581 12 N -0.588 5.588 13 C 0.107 3.893 14 C 0.149 3.851 15 H 0.073 0.927 16 C -0.115 4.115 17 C -0.135 4.135 18 C -0.125 4.125 19 C 0.173 3.827 20 H 0.086 0.914 21 C 0.117 3.883 22 N -0.592 5.592 23 C -0.260 4.260 24 H 0.059 0.941 25 C -0.035 4.035 26 N -0.917 5.917 27 Si 0.957 3.043 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.283 1.283 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.068 0.932 49 H 0.091 0.909 50 H 0.055 0.945 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.457 3.409 -14.011 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.080 4.080 5 N -0.261 5.261 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.134 4.134 9 H 0.134 0.866 10 C 0.316 3.684 11 O -0.462 6.462 12 N -0.319 5.319 13 C -0.018 4.018 14 C 0.042 3.958 15 H 0.092 0.908 16 C -0.154 4.154 17 C -0.173 4.173 18 C -0.164 4.164 19 C 0.066 3.934 20 H 0.104 0.896 21 C -0.006 4.006 22 N -0.314 5.314 23 C -0.390 4.390 24 H 0.077 0.923 25 C -0.232 4.232 26 N -0.562 5.562 27 Si 0.787 3.213 28 H -0.212 1.212 29 H -0.220 1.220 30 H -0.210 1.210 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.074 0.926 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.529 3.341 -14.113 15.521 hybrid contribution 0.862 0.303 1.518 1.771 sum -4.666 3.644 -12.596 13.918 Atomic orbital electron populations 1.21672 0.92782 1.02536 1.02125 1.22193 0.97775 0.98552 0.92423 0.91388 1.23034 0.93163 0.95747 0.96022 1.63659 1.05308 1.55414 1.01700 1.22623 0.92560 0.98803 0.99079 1.23015 0.94292 1.00040 0.89716 1.22557 0.99357 0.98902 0.92611 0.86568 1.20468 0.75858 0.87997 0.84125 1.90625 1.52530 1.18374 1.84670 1.48229 1.62381 1.11197 1.10088 1.22039 0.99617 0.94055 0.86102 1.21321 0.92789 0.86169 0.95559 0.90840 1.21823 0.96512 0.99234 0.97832 1.22066 1.00058 0.96008 0.99204 1.22030 0.97676 0.96531 1.00165 1.20984 0.91196 0.96006 0.85238 0.89645 1.22117 0.99845 0.78957 0.99721 1.44510 1.69507 1.04690 1.12699 1.19303 1.19115 1.14185 0.86373 0.92312 1.25480 0.96655 1.02158 0.98902 1.70052 1.30691 1.29960 1.25528 0.85508 0.77065 0.78483 0.80261 1.21174 1.21990 1.20974 0.91312 0.93952 0.90692 0.88694 0.91307 0.95682 0.91176 0.89454 0.89290 0.94455 0.93618 0.89929 0.93234 0.92129 0.93246 0.89779 0.93969 0.91336 0.89054 0.92636 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.13 71.98 0.66 -2.06 16 2 C -0.09 -2.09 2.66 -9.61 -0.03 -2.12 16 3 H 0.07 1.87 7.40 -2.38 -0.02 1.85 16 4 C 0.05 0.92 6.50 86.65 0.56 1.48 16 5 N -0.54 -11.89 5.44 -911.71 -4.96 -16.86 16 6 C 0.02 0.32 9.12 127.69 1.16 1.49 16 7 C 0.06 1.50 5.52 86.78 0.48 1.98 16 8 C -0.11 -3.04 1.80 -10.15 -0.02 -3.05 16 9 H 0.12 3.00 7.42 -2.39 -0.02 2.98 16 10 C 0.53 17.78 4.38 87.65 0.38 18.17 16 11 O -0.58 -22.48 15.11 -3.04 -0.05 -22.53 16 12 N -0.59 -21.37 1.66 -818.23 -1.36 -22.73 16 13 C 0.11 4.13 5.89 86.49 0.51 4.64 16 14 C 0.15 6.00 3.61 45.11 0.16 6.16 16 15 H 0.07 2.95 8.03 -2.39 -0.02 2.93 16 16 C -0.11 -4.11 5.58 30.72 0.17 -3.94 16 17 C -0.14 -4.61 5.55 30.60 0.17 -4.44 16 18 C -0.13 -4.51 5.57 30.72 0.17 -4.34 16 19 C 0.17 7.32 2.64 44.94 0.12 7.44 16 20 H 0.09 4.19 5.91 -2.39 -0.01 4.18 16 21 C 0.12 4.44 5.02 86.32 0.43 4.87 16 22 N -0.59 -27.41 2.54 -646.59 -1.64 -29.05 16 23 C -0.26 -13.46 9.73 84.04 0.82 -12.64 16 24 H 0.06 3.06 7.90 -2.91 -0.02 3.03 16 25 C -0.04 -1.83 4.97 84.86 0.42 -1.41 16 26 N -0.92 -48.74 10.73 21.65 0.23 -48.51 16 27 Si 0.96 42.98 29.59 68.60 2.03 45.01 16 28 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 30 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 31 H 0.07 1.23 8.13 -2.38 -0.02 1.21 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.59 7.82 -2.39 -0.02 1.58 16 35 H 0.07 1.16 7.58 -2.39 -0.02 1.14 16 36 H 0.02 0.47 8.11 -2.39 -0.02 0.45 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.09 2.41 6.52 -2.39 -0.02 2.39 16 40 H 0.04 1.06 7.67 -2.39 -0.02 1.04 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 3.10 6.99 -2.38 -0.02 3.08 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 2.90 2.50 -3.36 -0.01 2.89 16 47 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.09 2.96 4.55 -2.39 -0.01 2.95 16 50 H 0.06 2.47 7.74 -2.39 -0.02 2.46 16 51 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -58.09 368.05 1.33 -56.75 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.90 Total: 25.69 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.18 Total: 12.22 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -7.73 Total: -117.15 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -58.09 1.33 -56.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039914327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.226 kcal (2) G-P(sol) polarization free energy of solvation -58.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds