Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.36544 * 2 1 4 4 C 1.54381 * 110.32441 * 122.18254 * 2 1 3 5 5 N 1.48562 * 104.69672 * 142.68664 * 4 2 1 6 6 C 1.46900 * 111.00313 * 201.01515 * 5 4 2 7 7 C 1.48674 * 104.17159 * 320.67785 * 5 4 2 8 8 C 1.54269 * 110.32317 * 237.82242 * 2 1 3 9 9 H 1.08994 * 110.32163 * 122.20585 * 8 2 1 10 10 C 1.50698 * 110.32300 * 0.09996 * 8 2 1 11 11 O 1.21285 * 120.00200 * 313.51547 * 10 8 2 12 12 N 1.34774 * 119.99697 * 133.51727 * 10 8 2 13 13 C 1.46951 * 120.43781 * 184.94878 * 12 10 8 14 14 C 1.53596 * 108.52823 * 125.75450 * 13 12 10 15 15 H 1.09003 * 110.59525 * 172.15912 * 14 13 12 16 16 C 1.53371 * 108.68549 * 293.74497 * 14 13 12 17 17 C 1.54195 * 109.08198 * 61.78501 * 16 14 13 18 18 C 1.53005 * 110.61646 * 58.98018 * 17 16 14 19 19 C 1.53368 * 109.25947 * 300.28423 * 18 17 16 20 20 H 1.09001 * 110.60090 * 177.53093 * 19 18 17 21 21 C 1.46946 * 120.44553 * 4.67135 * 12 10 8 22 22 N 1.47566 * 107.77074 * 51.14134 * 14 13 12 23 23 C 1.36933 * 121.61175 * 120.50509 * 22 14 13 24 24 H 1.08000 * 119.99988 * 212.99662 * 23 22 14 25 25 C 1.38817 * 120.00076 * 32.99368 * 23 22 14 26 26 N 1.31618 * 119.99669 * 13.20076 * 25 23 22 27 27 Si 1.86797 * 119.99993 * 193.19183 * 25 23 22 28 28 H 1.48492 * 109.47179 * 60.00295 * 27 25 23 29 29 H 1.48499 * 109.47306 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47085 * 300.00256 * 27 25 23 31 31 H 1.08998 * 109.46988 * 309.37884 * 1 2 3 32 32 H 1.09001 * 109.47273 * 69.38271 * 1 2 3 33 33 H 1.09002 * 109.47109 * 189.37463 * 1 2 3 34 34 H 1.08993 * 110.41404 * 261.52571 * 4 2 1 35 35 H 1.09002 * 110.40699 * 23.85543 * 4 2 1 36 36 H 1.09009 * 109.46330 * 59.87746 * 6 5 4 37 37 H 1.08993 * 109.47292 * 179.87600 * 6 5 4 38 38 H 1.09003 * 109.47082 * 299.88620 * 6 5 4 39 39 H 1.09000 * 110.29889 * 280.55157 * 7 5 4 40 40 H 1.08996 * 110.54238 * 158.20580 * 7 5 4 41 41 H 1.09005 * 109.62202 * 245.45868 * 13 12 10 42 42 H 1.08993 * 109.63314 * 5.84399 * 13 12 10 43 43 H 1.08994 * 109.50396 * 180.23399 * 16 14 13 44 44 H 1.09002 * 109.50504 * 300.35641 * 16 14 13 45 45 H 1.09006 * 108.30211 * 299.07635 * 17 16 14 46 46 H 1.08992 * 109.64583 * 179.74147 * 17 16 14 47 47 H 1.08996 * 109.50362 * 180.35201 * 18 17 16 48 48 H 1.08997 * 109.50924 * 60.21608 * 18 17 16 49 49 H 1.09002 * 109.62265 * 353.95224 * 21 12 10 50 50 H 1.08998 * 109.61936 * 114.52169 * 21 12 10 51 51 H 0.97000 * 119.99820 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 1.2253 5 7 3.2689 -1.4851 0.7245 6 6 3.6034 -2.6240 1.5899 7 6 2.8806 -1.9422 -0.6360 8 6 2.0658 -0.7704 -1.2244 9 1 2.7081 -0.1267 -1.8253 10 6 0.9224 -1.2911 -2.0566 11 8 -0.0101 -1.8530 -1.5220 12 7 0.9360 -1.1324 -3.3949 13 6 -0.2212 -1.5383 -4.2046 14 6 -0.6667 -0.3392 -5.0548 15 1 -1.4336 -0.6394 -5.7689 16 6 -1.1980 0.7551 -4.1207 17 6 -0.0625 1.2126 -3.1832 18 6 1.1214 1.7470 -3.9918 19 6 1.6441 0.6398 -4.9155 20 1 2.4613 1.0105 -5.5342 21 6 2.1058 -0.5455 -4.0632 22 7 0.5220 0.1813 -5.7573 23 6 0.5810 0.2367 -7.1242 24 1 1.5246 0.0952 -7.6302 25 6 -0.5721 0.4746 -7.8596 26 7 -1.6611 0.9015 -7.2561 27 14 -0.5781 0.1891 -9.7056 28 1 -0.2601 -1.2337 -9.9875 29 1 -1.9197 0.5147 -10.2526 30 1 0.4411 1.0601 -10.3445 31 1 -0.3633 0.6520 0.7943 32 1 -0.3634 0.3619 -0.9618 33 1 -0.3633 -1.0140 0.1674 34 1 2.3394 -0.0780 2.0209 35 1 1.3221 -1.4834 1.5815 36 1 2.7655 -3.3209 1.6133 37 1 4.4861 -3.1302 1.1992 38 1 3.8066 -2.2661 2.5992 39 1 2.2648 -2.8392 -0.5721 40 1 3.7659 -2.1321 -1.2428 41 1 0.0604 -2.3651 -4.8568 42 1 -1.0352 -1.8492 -3.5499 43 1 -1.5222 1.6119 -4.7113 44 1 -2.0405 0.3673 -3.5481 45 1 0.2598 0.3553 -2.5921 46 1 -0.4292 1.9942 -2.5179 47 1 1.9147 2.0590 -3.3126 48 1 0.7984 2.5984 -4.5909 49 1 2.8198 -0.2006 -3.3154 50 1 2.5744 -1.2927 -4.7038 51 1 -2.4667 1.0681 -7.7700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039914328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 33.477502 kcal Electronic energy + Delta-G solvation = -30675.552007 eV Core-core repulsion = 26997.753774 eV Total energy + Delta-G solvation = -3677.798233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.14948 -38.99439 -37.27786 -34.04515 -33.38088 -32.64275 -31.92125 -30.52405 -29.89047 -27.28903 -26.63807 -25.67923 -24.76710 -23.57777 -21.82374 -21.51576 -21.21933 -20.69311 -18.69804 -18.22438 -17.41625 -16.47778 -15.84833 -15.37355 -15.11048 -14.80205 -14.61583 -14.31955 -14.18099 -13.80595 -13.64744 -13.37114 -13.09436 -12.90167 -12.67111 -12.46713 -12.38649 -12.09302 -11.90974 -11.75653 -11.65678 -11.53169 -11.27657 -11.15433 -11.04819 -10.97303 -10.76364 -10.73472 -10.45204 -10.32191 -10.12170 -10.07362 -9.89325 -9.51194 -9.41766 -9.01891 -8.66361 -8.52046 -7.82655 -6.56633 -5.84831 -3.34727 2.89539 3.33921 3.38041 3.40372 3.41905 3.94124 4.41190 4.46650 4.61201 4.78975 4.96148 5.11930 5.16085 5.27166 5.31366 5.31727 5.40541 5.53807 5.60945 5.66277 5.66977 5.68638 5.71347 5.74749 5.85105 5.88380 5.88939 5.94564 6.03538 6.13333 6.17886 6.25888 6.31316 6.46303 6.49155 6.50252 6.57374 6.61138 6.68573 6.73049 6.82444 6.89763 6.97614 7.09748 7.13941 7.50002 7.60909 7.73216 7.92768 8.38440 8.56981 9.11885 9.72036 10.36871 11.21647 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.003924 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.663404 B = 7133.499653 C = 7370.638188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 H 0.082 0.918 4 C 0.037 3.963 5 N -0.515 5.515 6 C 0.014 3.986 7 C 0.049 3.951 8 C -0.120 4.120 9 H 0.103 0.897 10 C 0.521 3.479 11 O -0.548 6.548 12 N -0.587 5.587 13 C 0.092 3.908 14 C 0.182 3.818 15 H 0.109 0.891 16 C -0.114 4.114 17 C -0.141 4.141 18 C -0.122 4.122 19 C 0.150 3.850 20 H 0.077 0.923 21 C 0.090 3.910 22 N -0.577 5.577 23 C -0.256 4.256 24 H 0.064 0.936 25 C 0.010 3.990 26 N -0.895 5.895 27 Si 0.903 3.097 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.031 0.969 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -3.091 13.875 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.094 4.094 3 H 0.100 0.900 4 C -0.090 4.090 5 N -0.239 5.239 6 C -0.135 4.135 7 C -0.079 4.079 8 C -0.141 4.141 9 H 0.121 0.879 10 C 0.310 3.690 11 O -0.428 6.428 12 N -0.319 5.319 13 C -0.032 4.032 14 C 0.074 3.926 15 H 0.127 0.873 16 C -0.153 4.153 17 C -0.179 4.179 18 C -0.161 4.161 19 C 0.042 3.958 20 H 0.096 0.904 21 C -0.034 4.034 22 N -0.298 5.298 23 C -0.385 4.385 24 H 0.082 0.918 25 C -0.189 4.189 26 N -0.538 5.538 27 Si 0.733 3.267 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.977 -3.025 14.007 16.400 hybrid contribution -0.730 -0.443 -1.052 1.354 sum 7.247 -3.468 12.955 15.244 Atomic orbital electron populations 1.22414 0.93504 1.03668 1.02227 1.21702 0.96848 0.98784 0.92021 0.89957 1.23248 0.90972 0.97406 0.97415 1.65392 1.33551 1.22771 1.02166 1.22502 1.00632 0.92647 0.97745 1.23002 0.98425 0.95821 0.90647 1.22280 0.96335 0.98361 0.97142 0.87876 1.20003 0.87474 0.79224 0.82250 1.90617 1.37189 1.43916 1.71036 1.48185 1.18098 1.60013 1.05606 1.22526 0.87591 0.99337 0.93726 1.21023 0.90561 0.89167 0.91799 0.87322 1.21988 0.95478 1.00938 0.96907 1.22363 0.96813 1.00330 0.98344 1.21928 0.97037 0.99275 0.97871 1.21152 0.92524 0.90707 0.91466 0.90444 1.22423 0.87058 0.97541 0.96409 1.44302 1.13315 1.70755 1.01411 1.19042 0.94894 1.43674 0.80931 0.91824 1.25174 0.97378 0.98553 0.97826 1.69938 1.02147 1.46810 1.34904 0.86375 0.76748 0.78159 0.85417 1.21000 1.21675 1.20906 0.93900 0.91331 0.89686 0.90144 0.93246 0.95218 0.91251 0.91266 0.92949 0.89665 0.92376 0.90337 0.90880 0.94403 0.90053 0.95048 0.94144 0.92210 0.90536 0.91584 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 7.66 37.16 0.28 -2.00 16 2 C -0.07 -0.93 3.65 -89.23 -0.33 -1.26 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.04 0.42 6.03 -2.18 -0.01 0.41 16 5 N -0.52 -5.86 5.66 -238.13 -1.35 -7.21 16 6 C 0.01 0.13 9.53 60.06 0.57 0.70 16 7 C 0.05 0.60 6.04 -2.12 -0.01 0.59 16 8 C -0.12 -1.59 2.90 -90.39 -0.26 -1.85 16 9 H 0.10 1.30 5.36 -51.93 -0.28 1.02 16 10 C 0.52 8.54 3.37 -10.99 -0.04 8.50 16 11 O -0.55 -10.32 12.73 5.55 0.07 -10.25 16 12 N -0.59 -10.11 1.66 -172.53 -0.29 -10.40 16 13 C 0.09 1.79 5.88 -3.49 -0.02 1.77 16 14 C 0.18 4.03 2.58 -66.85 -0.17 3.86 16 15 H 0.11 2.76 6.13 -51.93 -0.32 2.44 16 16 C -0.11 -2.44 5.62 -25.91 -0.15 -2.59 16 17 C -0.14 -2.62 4.57 -26.10 -0.12 -2.74 16 18 C -0.12 -2.22 5.63 -26.54 -0.15 -2.37 16 19 C 0.15 2.82 3.58 -67.09 -0.24 2.58 16 20 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 21 C 0.09 1.43 5.77 -3.74 -0.02 1.41 16 22 N -0.58 -13.15 2.51 -155.70 -0.39 -13.54 16 23 C -0.26 -6.51 9.69 -15.06 -0.15 -6.66 16 24 H 0.06 1.60 7.86 -52.49 -0.41 1.19 16 25 C 0.01 0.27 5.05 -17.43 -0.09 0.18 16 26 N -0.90 -24.28 10.79 55.49 0.60 -23.68 16 27 Si 0.90 20.76 29.57 -169.99 -5.03 15.73 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.11 4.54 -51.93 -0.24 0.88 16 33 H 0.08 1.35 5.94 -51.93 -0.31 1.05 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.59 7.54 -51.93 -0.39 0.19 16 36 H 0.03 0.28 7.98 -51.92 -0.41 -0.13 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.71 7.58 -51.93 -0.39 0.32 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.56 7.01 -51.93 -0.36 1.19 16 43 H 0.07 1.79 7.73 -51.93 -0.40 1.38 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.43 1.24 -51.93 -0.06 1.36 16 46 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.08 1.01 5.09 -51.93 -0.26 0.74 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -27.82 359.74 -10.32 -38.14 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.47 Total: 5.24 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.90 Total: 0.54 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -1.43 Total: -54.82 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.82 -10.32 -38.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039914328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.620 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds