Wall clock time and date at job start Fri Apr 10 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.36544 * 2 1 4 4 C 1.54381 * 110.32441 * 122.18254 * 2 1 3 5 5 N 1.48562 * 104.69672 * 142.68664 * 4 2 1 6 6 C 1.46900 * 111.00313 * 201.01515 * 5 4 2 7 7 C 1.48674 * 104.17159 * 320.67785 * 5 4 2 8 8 C 1.54269 * 110.32317 * 237.82242 * 2 1 3 9 9 H 1.08994 * 110.32163 * 122.20585 * 8 2 1 10 10 C 1.50698 * 110.32300 * 0.09996 * 8 2 1 11 11 O 1.21285 * 120.00200 * 313.51547 * 10 8 2 12 12 N 1.34774 * 119.99697 * 133.51727 * 10 8 2 13 13 C 1.46951 * 120.43781 * 184.94878 * 12 10 8 14 14 C 1.53596 * 108.52823 * 125.75450 * 13 12 10 15 15 H 1.09003 * 110.59525 * 172.15912 * 14 13 12 16 16 C 1.53371 * 108.68549 * 293.74497 * 14 13 12 17 17 C 1.54195 * 109.08198 * 61.78501 * 16 14 13 18 18 C 1.53005 * 110.61646 * 58.98018 * 17 16 14 19 19 C 1.53368 * 109.25947 * 300.28423 * 18 17 16 20 20 H 1.09001 * 110.60090 * 177.53093 * 19 18 17 21 21 C 1.46946 * 120.44553 * 4.67135 * 12 10 8 22 22 N 1.47566 * 107.77074 * 51.14134 * 14 13 12 23 23 C 1.36933 * 121.61175 * 120.50509 * 22 14 13 24 24 H 1.08000 * 119.99988 * 212.99662 * 23 22 14 25 25 C 1.38817 * 120.00076 * 32.99368 * 23 22 14 26 26 N 1.31618 * 119.99669 * 13.20076 * 25 23 22 27 27 Si 1.86797 * 119.99993 * 193.19183 * 25 23 22 28 28 H 1.48492 * 109.47179 * 60.00295 * 27 25 23 29 29 H 1.48499 * 109.47306 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47085 * 300.00256 * 27 25 23 31 31 H 1.08998 * 109.46988 * 309.37884 * 1 2 3 32 32 H 1.09001 * 109.47273 * 69.38271 * 1 2 3 33 33 H 1.09002 * 109.47109 * 189.37463 * 1 2 3 34 34 H 1.08993 * 110.41404 * 261.52571 * 4 2 1 35 35 H 1.09002 * 110.40699 * 23.85543 * 4 2 1 36 36 H 1.09009 * 109.46330 * 59.87746 * 6 5 4 37 37 H 1.08993 * 109.47292 * 179.87600 * 6 5 4 38 38 H 1.09003 * 109.47082 * 299.88620 * 6 5 4 39 39 H 1.09000 * 110.29889 * 280.55157 * 7 5 4 40 40 H 1.08996 * 110.54238 * 158.20580 * 7 5 4 41 41 H 1.09005 * 109.62202 * 245.45868 * 13 12 10 42 42 H 1.08993 * 109.63314 * 5.84399 * 13 12 10 43 43 H 1.08994 * 109.50396 * 180.23399 * 16 14 13 44 44 H 1.09002 * 109.50504 * 300.35641 * 16 14 13 45 45 H 1.09006 * 108.30211 * 299.07635 * 17 16 14 46 46 H 1.08992 * 109.64583 * 179.74147 * 17 16 14 47 47 H 1.08996 * 109.50362 * 180.35201 * 18 17 16 48 48 H 1.08997 * 109.50924 * 60.21608 * 18 17 16 49 49 H 1.09002 * 109.62265 * 353.95224 * 21 12 10 50 50 H 1.08998 * 109.61936 * 114.52169 * 21 12 10 51 51 H 0.97000 * 119.99820 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 1.2253 5 7 3.2689 -1.4851 0.7245 6 6 3.6034 -2.6240 1.5899 7 6 2.8806 -1.9422 -0.6360 8 6 2.0658 -0.7704 -1.2244 9 1 2.7081 -0.1267 -1.8253 10 6 0.9224 -1.2911 -2.0566 11 8 -0.0101 -1.8530 -1.5220 12 7 0.9360 -1.1324 -3.3949 13 6 -0.2212 -1.5383 -4.2046 14 6 -0.6667 -0.3392 -5.0548 15 1 -1.4336 -0.6394 -5.7689 16 6 -1.1980 0.7551 -4.1207 17 6 -0.0625 1.2126 -3.1832 18 6 1.1214 1.7470 -3.9918 19 6 1.6441 0.6398 -4.9155 20 1 2.4613 1.0105 -5.5342 21 6 2.1058 -0.5455 -4.0632 22 7 0.5220 0.1813 -5.7573 23 6 0.5810 0.2367 -7.1242 24 1 1.5246 0.0952 -7.6302 25 6 -0.5721 0.4746 -7.8596 26 7 -1.6611 0.9015 -7.2561 27 14 -0.5781 0.1891 -9.7056 28 1 -0.2601 -1.2337 -9.9875 29 1 -1.9197 0.5147 -10.2526 30 1 0.4411 1.0601 -10.3445 31 1 -0.3633 0.6520 0.7943 32 1 -0.3634 0.3619 -0.9618 33 1 -0.3633 -1.0140 0.1674 34 1 2.3394 -0.0780 2.0209 35 1 1.3221 -1.4834 1.5815 36 1 2.7655 -3.3209 1.6133 37 1 4.4861 -3.1302 1.1992 38 1 3.8066 -2.2661 2.5992 39 1 2.2648 -2.8392 -0.5721 40 1 3.7659 -2.1321 -1.2428 41 1 0.0604 -2.3651 -4.8568 42 1 -1.0352 -1.8492 -3.5499 43 1 -1.5222 1.6119 -4.7113 44 1 -2.0405 0.3673 -3.5481 45 1 0.2598 0.3553 -2.5921 46 1 -0.4292 1.9942 -2.5179 47 1 1.9147 2.0590 -3.3126 48 1 0.7984 2.5984 -4.5909 49 1 2.8198 -0.2006 -3.3154 50 1 2.5744 -1.2927 -4.7038 51 1 -2.4667 1.0681 -7.7700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039914328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:48 Heat of formation + Delta-G solvation = 17.390867 kcal Electronic energy + Delta-G solvation = -30676.249576 eV Core-core repulsion = 26997.753774 eV Total energy + Delta-G solvation = -3678.495801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.47852 -40.24297 -38.56104 -35.66643 -34.53579 -34.19070 -33.47293 -32.23549 -31.02768 -28.61750 -27.83563 -27.14072 -25.95330 -25.20624 -23.22208 -22.96184 -22.47590 -21.84516 -20.15555 -19.77547 -18.68282 -18.01503 -16.99932 -16.65498 -16.55173 -16.41613 -15.79990 -15.64621 -15.48434 -15.21052 -14.96227 -14.81858 -14.53950 -14.29834 -14.02158 -13.88072 -13.48824 -13.40426 -13.28692 -13.07954 -13.00749 -12.91670 -12.68277 -12.44328 -12.43205 -12.35742 -12.17553 -12.06726 -11.88574 -11.80638 -11.70421 -11.56048 -11.43484 -11.14038 -11.04708 -10.47229 -10.33669 -9.53321 -9.36954 -8.38528 -7.80279 -5.32432 1.48796 1.50754 1.56285 1.60737 2.05153 2.52940 3.03327 3.33389 3.47389 3.53272 3.62531 3.69334 3.99080 4.16550 4.18685 4.22660 4.28060 4.30322 4.35103 4.40765 4.48570 4.53637 4.55233 4.61566 4.64234 4.74451 4.78031 4.79781 4.84978 4.87404 4.91263 4.95461 4.96463 5.02675 5.05698 5.10830 5.17821 5.23451 5.29142 5.37254 5.44410 5.55120 5.59133 5.70341 5.74056 5.75770 5.87508 6.00174 6.45403 6.57346 7.18139 7.23963 7.85319 8.46611 9.22289 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.003924 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.663404 B = 7133.499653 C = 7370.638188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.074 4.074 3 H 0.101 0.899 4 C 0.040 3.960 5 N -0.515 5.515 6 C 0.012 3.988 7 C 0.052 3.948 8 C -0.115 4.115 9 H 0.121 0.879 10 C 0.521 3.479 11 O -0.574 6.574 12 N -0.591 5.591 13 C 0.105 3.895 14 C 0.184 3.816 15 H 0.068 0.932 16 C -0.107 4.107 17 C -0.135 4.135 18 C -0.116 4.116 19 C 0.142 3.858 20 H 0.084 0.916 21 C 0.097 3.903 22 N -0.592 5.592 23 C -0.259 4.259 24 H 0.068 0.932 25 C -0.040 4.040 26 N -0.922 5.922 27 Si 0.961 3.039 28 H -0.281 1.281 29 H -0.300 1.300 30 H -0.277 1.277 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.022 0.978 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.098 0.902 46 H 0.037 0.963 47 H 0.082 0.918 48 H 0.029 0.971 49 H 0.117 0.883 50 H 0.071 0.929 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 -3.002 15.734 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.094 4.094 3 H 0.119 0.881 4 C -0.088 4.088 5 N -0.239 5.239 6 C -0.137 4.137 7 C -0.076 4.076 8 C -0.136 4.136 9 H 0.139 0.861 10 C 0.312 3.688 11 O -0.455 6.455 12 N -0.322 5.322 13 C -0.019 4.019 14 C 0.076 3.924 15 H 0.086 0.914 16 C -0.147 4.147 17 C -0.173 4.173 18 C -0.155 4.155 19 C 0.035 3.965 20 H 0.102 0.898 21 C -0.026 4.026 22 N -0.314 5.314 23 C -0.389 4.389 24 H 0.085 0.915 25 C -0.237 4.237 26 N -0.567 5.567 27 Si 0.790 3.210 28 H -0.207 1.207 29 H -0.227 1.227 30 H -0.203 1.203 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.056 0.944 47 H 0.101 0.899 48 H 0.048 0.952 49 H 0.135 0.865 50 H 0.089 0.911 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.207 -2.940 15.889 19.664 hybrid contribution -1.741 -0.495 -1.567 2.394 sum 9.466 -3.435 14.322 17.508 Atomic orbital electron populations 1.22287 0.95011 1.02492 1.01447 1.21772 0.95453 0.99887 0.92240 0.88095 1.23245 0.90820 0.97426 0.97282 1.65451 1.33055 1.23428 1.01957 1.22579 1.00760 0.92052 0.98268 1.23006 0.98568 0.94478 0.91584 1.22334 0.95140 0.99077 0.97058 0.86131 1.20628 0.87977 0.78412 0.81763 1.90628 1.38552 1.44905 1.71377 1.48218 1.17696 1.60371 1.05959 1.22105 0.88622 0.97778 0.93429 1.20783 0.89910 0.90298 0.91392 0.91368 1.21858 0.96641 0.99275 0.96890 1.22356 0.95935 1.01151 0.97821 1.21872 0.97780 0.97865 0.97968 1.21412 0.91298 0.92214 0.91596 0.89755 1.22443 0.86865 0.96247 0.97046 1.44463 1.14336 1.71412 1.01184 1.19354 0.94837 1.42184 0.82541 0.91467 1.25818 0.97387 0.99283 1.01218 1.70114 1.02359 1.48512 1.35727 0.85455 0.76082 0.77994 0.81464 1.20690 1.22709 1.20282 0.92270 0.93608 0.91878 0.88229 0.94299 0.95932 0.90145 0.89820 0.94802 0.87847 0.92824 0.91116 0.94722 0.94837 0.88422 0.94378 0.89940 0.95196 0.86489 0.91075 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 7.66 71.98 0.55 -3.57 16 2 C -0.07 -1.61 3.65 -9.89 -0.04 -1.65 16 3 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.04 0.77 6.03 86.45 0.52 1.29 16 5 N -0.52 -9.77 5.66 -907.30 -5.14 -14.91 16 6 C 0.01 0.18 9.53 127.69 1.22 1.40 16 7 C 0.05 1.09 6.04 86.43 0.52 1.61 16 8 C -0.11 -2.64 2.90 -10.64 -0.03 -2.67 16 9 H 0.12 2.35 5.36 -2.39 -0.01 2.34 16 10 C 0.52 16.06 3.37 87.66 0.30 16.36 16 11 O -0.57 -21.27 12.73 -3.04 -0.04 -21.31 16 12 N -0.59 -19.38 1.66 -818.15 -1.36 -20.74 16 13 C 0.11 4.17 5.88 86.49 0.51 4.68 16 14 C 0.18 8.44 2.58 45.11 0.12 8.55 16 15 H 0.07 3.69 6.13 -2.39 -0.01 3.68 16 16 C -0.11 -4.78 5.62 31.12 0.17 -4.61 16 17 C -0.13 -4.91 4.57 31.00 0.14 -4.77 16 18 C -0.12 -3.98 5.63 30.72 0.17 -3.81 16 19 C 0.14 5.08 3.58 44.95 0.16 5.24 16 20 H 0.08 2.91 8.01 -2.39 -0.02 2.89 16 21 C 0.10 2.79 5.77 86.34 0.50 3.29 16 22 N -0.59 -27.21 2.51 -646.51 -1.62 -28.83 16 23 C -0.26 -13.32 9.69 84.04 0.81 -12.51 16 24 H 0.07 3.35 7.86 -2.91 -0.02 3.33 16 25 C -0.04 -2.16 5.05 84.86 0.43 -1.73 16 26 N -0.92 -52.44 10.79 21.65 0.23 -52.21 16 27 Si 0.96 43.67 29.57 68.60 2.03 45.70 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 30 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.42 4.54 -2.39 -0.01 1.41 16 33 H 0.06 1.96 5.94 -2.39 -0.01 1.95 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 0.84 7.54 -2.39 -0.02 0.82 16 36 H 0.02 0.38 7.98 -2.38 -0.02 0.36 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.03 0.84 7.58 -2.39 -0.02 0.82 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.07 2.89 7.01 -2.39 -0.02 2.88 16 43 H 0.03 1.78 7.73 -2.39 -0.02 1.76 16 44 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.10 3.27 1.24 -2.39 0.00 3.26 16 46 H 0.04 1.32 8.06 -2.39 -0.02 1.31 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.12 2.44 5.09 -2.39 -0.01 2.43 16 50 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -63.00 359.74 1.08 -61.92 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.92 Total: 23.26 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.06 Total: 7.11 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -7.88 Total: -116.68 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -63.00 1.08 -61.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039914328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.310 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds