Wall clock time and date at job start Fri Apr 10 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.87561 * 2 1 4 4 C 1.54904 * 110.98843 * 123.88461 * 2 1 3 5 5 N 1.47844 * 104.79319 * 155.16119 * 4 2 1 6 6 C 1.46898 * 110.99996 * 213.63461 * 5 4 2 7 7 C 1.47437 * 108.56779 * 335.90340 * 5 4 2 8 8 C 1.54311 * 107.23394 * 0.99323 * 7 5 4 9 9 H 1.09008 * 110.70495 * 263.89934 * 8 7 5 10 10 C 1.50702 * 110.70858 * 140.66560 * 8 7 5 11 11 O 1.21281 * 120.00025 * 241.44969 * 10 8 7 12 12 N 1.34780 * 119.99899 * 61.44900 * 10 8 7 13 13 C 1.46946 * 120.44220 * 359.72823 * 12 10 8 14 14 C 1.54068 * 108.29774 * 125.71779 * 13 12 10 15 15 H 1.08994 * 110.52171 * 172.26447 * 14 13 12 16 16 C 1.53374 * 109.34621 * 294.23895 * 14 13 12 17 17 C 1.53006 * 109.24731 * 60.52691 * 16 14 13 18 18 C 1.54190 * 110.61841 * 59.72453 * 17 16 14 19 19 C 1.53363 * 109.08717 * 301.01831 * 18 17 16 20 20 H 1.09005 * 110.59516 * 176.61417 * 19 18 17 21 21 C 1.46946 * 120.43938 * 180.02562 * 12 10 8 22 22 N 1.47566 * 108.50047 * 55.13383 * 19 18 17 23 23 C 1.36939 * 121.61068 * 122.02940 * 22 19 18 24 24 H 1.08000 * 119.99913 * 27.63598 * 23 22 19 25 25 C 1.38811 * 119.99949 * 207.63695 * 23 22 19 26 26 N 1.31622 * 120.00014 * 18.82475 * 25 23 22 27 27 Si 1.86800 * 120.00031 * 198.82604 * 25 23 22 28 28 H 1.48504 * 109.46957 * 94.26504 * 27 25 23 29 29 H 1.48497 * 109.47237 * 214.26168 * 27 25 23 30 30 H 1.48498 * 109.47179 * 334.26476 * 27 25 23 31 31 H 1.09001 * 109.47355 * 183.84459 * 1 2 3 32 32 H 1.08999 * 109.47356 * 303.84918 * 1 2 3 33 33 H 1.09000 * 109.47352 * 63.84510 * 1 2 3 34 34 H 1.09000 * 110.37352 * 36.33494 * 4 2 1 35 35 H 1.09001 * 110.37581 * 273.99073 * 4 2 1 36 36 H 1.09000 * 109.47255 * 180.84387 * 6 5 4 37 37 H 1.09002 * 109.47380 * 60.84327 * 6 5 4 38 38 H 1.08999 * 109.47696 * 300.84364 * 6 5 4 39 39 H 1.09010 * 109.88626 * 120.39423 * 7 5 4 40 40 H 1.09000 * 109.88888 * 241.57822 * 7 5 4 41 41 H 1.09001 * 109.62076 * 245.48234 * 13 12 10 42 42 H 1.08995 * 109.62346 * 6.04854 * 13 12 10 43 43 H 1.09001 * 109.50724 * 180.46092 * 16 14 13 44 44 H 1.08995 * 109.50691 * 300.59611 * 16 14 13 45 45 H 1.09003 * 109.41443 * 180.68381 * 17 16 14 46 46 H 1.08998 * 109.42407 * 300.54789 * 17 16 14 47 47 H 1.09005 * 110.81187 * 180.38891 * 18 17 16 48 48 H 1.09007 * 108.37701 * 60.17644 * 18 17 16 49 49 H 1.09001 * 109.63066 * 353.96508 * 21 12 10 50 50 H 1.08997 * 109.62900 * 114.54640 * 21 12 10 51 51 H 0.97003 * 119.99547 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0848 -0.8063 1.2006 5 7 3.4312 -1.2423 0.7727 6 6 3.7611 -2.5593 1.3335 7 6 3.4691 -1.2709 -0.7009 8 6 2.0857 -0.8067 -1.2029 9 1 1.4474 -1.6631 -1.4205 10 6 2.2278 0.0757 -2.4163 11 8 1.8369 1.2233 -2.3806 12 7 2.7891 -0.4104 -3.5411 13 6 3.2714 -1.7975 -3.5931 14 6 2.6104 -2.4946 -4.7976 15 1 3.0441 -3.4824 -4.9526 16 6 1.0994 -2.6004 -4.5570 17 6 0.5133 -1.1953 -4.4045 18 6 0.7680 -0.3599 -5.6752 19 6 2.2789 -0.2717 -5.9229 20 1 2.4850 0.2640 -6.8496 21 6 2.9329 0.4417 -4.7296 22 7 2.8244 -1.6415 -5.9825 23 6 3.4971 -2.0989 -7.0841 24 1 4.0268 -1.4050 -7.7201 25 6 3.4982 -3.4543 -7.3835 26 7 2.5842 -4.2444 -6.8611 27 14 4.7969 -4.1571 -8.5276 28 1 5.9327 -4.6791 -7.7259 29 1 4.2072 -5.2607 -9.3273 30 1 5.2832 -3.0904 -9.4390 31 1 -0.3634 -1.0253 0.0689 32 1 -0.3634 0.5724 0.8535 33 1 -0.3634 0.4530 -0.9224 34 1 1.4522 -1.6708 1.4020 35 1 2.1544 -0.1719 2.0842 36 1 4.7624 -2.8493 1.0153 37 1 3.0398 -3.2960 0.9797 38 1 3.7258 -2.5101 2.4218 39 1 4.2420 -0.5940 -1.0651 40 1 3.6682 -2.2851 -1.0470 41 1 4.3549 -1.8040 -3.7118 42 1 2.9980 -2.3148 -2.6735 43 1 0.6301 -3.1007 -5.4041 44 1 0.9148 -3.1724 -3.6477 45 1 -0.5588 -1.2678 -4.2213 46 1 0.9913 -0.6924 -3.5639 47 1 0.3576 0.6442 -5.5674 48 1 0.2898 -0.8606 -6.5172 49 1 2.4371 1.3970 -4.5575 50 1 3.9904 0.6067 -4.9361 51 1 2.5848 -5.1915 -7.0706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039914330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:56 Heat of formation + Delta-G solvation = 19.524798 kcal Electronic energy + Delta-G solvation = -30553.659961 eV Core-core repulsion = 26875.256694 eV Total energy + Delta-G solvation = -3678.403267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.95890 -38.99737 -37.37105 -34.03086 -33.31785 -32.84656 -31.96731 -30.35348 -30.02731 -27.22514 -26.81667 -25.57608 -24.92832 -23.61427 -21.80529 -21.39447 -21.27086 -20.50083 -19.03227 -18.28602 -17.43500 -16.10912 -15.87004 -15.74647 -14.94379 -14.70694 -14.53637 -14.39310 -14.02382 -13.80219 -13.50336 -13.32890 -13.25624 -12.94524 -12.81491 -12.58333 -12.35901 -12.24259 -12.04928 -11.95712 -11.72658 -11.60203 -11.31606 -11.22211 -11.03921 -10.93527 -10.80722 -10.73251 -10.64554 -10.30075 -10.14752 -10.06926 -10.02260 -9.61235 -9.41562 -9.26825 -8.55822 -8.45501 -7.89150 -6.66398 -5.88077 -3.30403 2.93996 3.31864 3.39255 3.40617 3.42794 3.86724 4.37687 4.40794 4.55230 4.79920 5.03738 5.10086 5.17318 5.23979 5.27542 5.30425 5.31893 5.46317 5.53969 5.65162 5.68320 5.69562 5.72983 5.73932 5.78276 5.82127 5.90634 5.94045 5.95174 6.03344 6.15041 6.19661 6.25833 6.32848 6.35611 6.43931 6.47182 6.58781 6.70703 6.77228 6.83025 6.90399 6.98025 7.05018 7.09939 7.42246 7.51914 7.70750 7.91245 8.31541 8.54790 9.08529 9.70670 10.32737 11.18749 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.004524 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.851905 B = 6187.626359 C = 6921.417158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 H 0.095 0.905 4 C 0.044 3.956 5 N -0.534 5.534 6 C 0.019 3.981 7 C 0.052 3.948 8 C -0.129 4.129 9 H 0.101 0.899 10 C 0.527 3.473 11 O -0.553 6.553 12 N -0.588 5.588 13 C 0.082 3.918 14 C 0.177 3.823 15 H 0.114 0.886 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.122 4.122 19 C 0.152 3.848 20 H 0.076 0.924 21 C 0.102 3.898 22 N -0.578 5.578 23 C -0.249 4.249 24 H 0.068 0.932 25 C 0.005 3.995 26 N -0.897 5.897 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.081 0.919 50 H 0.061 0.939 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 3.435 13.835 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.114 0.886 4 C -0.084 4.084 5 N -0.258 5.258 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.151 4.151 9 H 0.119 0.881 10 C 0.316 3.684 11 O -0.432 6.432 12 N -0.320 5.320 13 C -0.042 4.042 14 C 0.069 3.931 15 H 0.132 0.868 16 C -0.151 4.151 17 C -0.174 4.174 18 C -0.161 4.161 19 C 0.044 3.956 20 H 0.094 0.906 21 C -0.022 4.022 22 N -0.299 5.299 23 C -0.379 4.379 24 H 0.086 0.914 25 C -0.194 4.194 26 N -0.541 5.541 27 Si 0.731 3.269 28 H -0.215 1.215 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.041 4.181 13.952 14.602 hybrid contribution -0.034 -1.310 -1.037 1.671 sum -1.075 2.871 12.915 13.274 Atomic orbital electron populations 1.21690 0.94028 1.01475 1.02512 1.22140 0.96039 1.00055 0.91580 0.88624 1.23184 0.88335 0.98509 0.98338 1.63571 1.27616 1.26826 1.07759 1.22563 1.01031 0.89083 1.00308 1.22955 0.95846 1.01383 0.87380 1.22650 0.98768 0.99343 0.94371 0.88105 1.19937 0.77388 0.87526 0.83571 1.90646 1.50434 1.18657 1.83456 1.48125 1.58383 1.13552 1.11892 1.22896 0.99134 0.81090 1.01048 1.21208 0.92538 0.95984 0.83359 0.86831 1.21793 0.98445 0.94809 1.00075 1.22224 0.98333 0.97434 0.99421 1.22105 0.97981 0.97886 0.98177 1.21222 0.91203 0.88195 0.94966 0.90556 1.22232 1.00574 0.93913 0.85520 1.44392 1.63196 1.08583 1.13684 1.19176 1.23361 0.91707 1.03609 0.91447 1.24994 0.97841 0.97648 0.98910 1.69994 1.32169 1.04677 1.47250 0.86289 0.81503 0.78696 0.80367 1.21510 1.21872 1.20442 0.92963 0.92407 0.91690 0.93315 0.90058 0.91206 0.95273 0.91420 0.90006 0.91392 0.91740 0.91059 0.90606 0.94844 0.95105 0.90764 0.93698 0.92612 0.90054 0.92059 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.31 37.16 0.35 -1.23 16 2 C -0.08 -0.98 2.68 -88.49 -0.24 -1.21 16 3 H 0.10 1.36 7.49 -51.93 -0.39 0.97 16 4 C 0.04 0.47 6.20 -2.30 -0.01 0.45 16 5 N -0.53 -6.20 5.44 -239.53 -1.30 -7.50 16 6 C 0.02 0.18 9.12 60.06 0.55 0.72 16 7 C 0.05 0.66 5.20 -2.84 -0.01 0.64 16 8 C -0.13 -1.76 1.83 -89.96 -0.16 -1.92 16 9 H 0.10 1.36 7.71 -51.92 -0.40 0.96 16 10 C 0.53 8.82 4.31 -10.98 -0.05 8.78 16 11 O -0.55 -10.65 15.16 5.56 0.08 -10.57 16 12 N -0.59 -10.15 1.63 -171.92 -0.28 -10.43 16 13 C 0.08 1.42 5.18 -3.24 -0.02 1.41 16 14 C 0.18 3.70 2.63 -66.59 -0.18 3.53 16 15 H 0.11 2.72 5.89 -51.93 -0.31 2.42 16 16 C -0.11 -2.27 5.60 -26.53 -0.15 -2.42 16 17 C -0.14 -2.58 5.58 -26.11 -0.15 -2.73 16 18 C -0.12 -2.39 5.68 -25.92 -0.15 -2.53 16 19 C 0.15 3.05 3.58 -66.83 -0.24 2.81 16 20 H 0.08 1.52 8.01 -51.93 -0.42 1.10 16 21 C 0.10 1.84 5.89 -3.47 -0.02 1.82 16 22 N -0.58 -13.14 2.53 -155.13 -0.39 -13.53 16 23 C -0.25 -6.33 9.71 -15.06 -0.15 -6.47 16 24 H 0.07 1.71 7.90 -52.49 -0.41 1.30 16 25 C 0.00 0.13 4.97 -17.43 -0.09 0.04 16 26 N -0.90 -23.85 10.93 55.49 0.61 -23.25 16 27 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 31 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.48 7.63 -51.93 -0.40 0.08 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.14 7.81 -51.92 -0.41 0.73 16 40 H 0.07 0.80 6.10 -51.93 -0.32 0.49 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.06 4.28 -51.93 -0.22 0.84 16 43 H 0.08 1.79 7.90 -51.93 -0.41 1.38 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.36 2.63 -51.94 -0.14 1.23 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -27.76 368.45 -10.28 -38.04 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.80 Total: 4.45 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.71 Total: 1.68 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -1.37 Total: -54.71 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.76 -10.28 -38.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039914330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.566 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds