Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.87561 * 2 1 4 4 C 1.54904 * 110.98843 * 123.88461 * 2 1 3 5 5 N 1.47844 * 104.79319 * 155.16119 * 4 2 1 6 6 C 1.46898 * 110.99996 * 213.63461 * 5 4 2 7 7 C 1.47437 * 108.56779 * 335.90340 * 5 4 2 8 8 C 1.54311 * 107.23394 * 0.99323 * 7 5 4 9 9 H 1.09008 * 110.70495 * 263.89934 * 8 7 5 10 10 C 1.50702 * 110.70858 * 140.66560 * 8 7 5 11 11 O 1.21281 * 120.00025 * 241.44969 * 10 8 7 12 12 N 1.34780 * 119.99899 * 61.44900 * 10 8 7 13 13 C 1.46946 * 120.44220 * 359.72823 * 12 10 8 14 14 C 1.54068 * 108.29774 * 125.71779 * 13 12 10 15 15 H 1.08994 * 110.52171 * 172.26447 * 14 13 12 16 16 C 1.53374 * 109.34621 * 294.23895 * 14 13 12 17 17 C 1.53006 * 109.24731 * 60.52691 * 16 14 13 18 18 C 1.54190 * 110.61841 * 59.72453 * 17 16 14 19 19 C 1.53363 * 109.08717 * 301.01831 * 18 17 16 20 20 H 1.09005 * 110.59516 * 176.61417 * 19 18 17 21 21 C 1.46946 * 120.43938 * 180.02562 * 12 10 8 22 22 N 1.47566 * 108.50047 * 55.13383 * 19 18 17 23 23 C 1.36939 * 121.61068 * 122.02940 * 22 19 18 24 24 H 1.08000 * 119.99913 * 27.63598 * 23 22 19 25 25 C 1.38811 * 119.99949 * 207.63695 * 23 22 19 26 26 N 1.31622 * 120.00014 * 18.82475 * 25 23 22 27 27 Si 1.86800 * 120.00031 * 198.82604 * 25 23 22 28 28 H 1.48504 * 109.46957 * 94.26504 * 27 25 23 29 29 H 1.48497 * 109.47237 * 214.26168 * 27 25 23 30 30 H 1.48498 * 109.47179 * 334.26476 * 27 25 23 31 31 H 1.09001 * 109.47355 * 183.84459 * 1 2 3 32 32 H 1.08999 * 109.47356 * 303.84918 * 1 2 3 33 33 H 1.09000 * 109.47352 * 63.84510 * 1 2 3 34 34 H 1.09000 * 110.37352 * 36.33494 * 4 2 1 35 35 H 1.09001 * 110.37581 * 273.99073 * 4 2 1 36 36 H 1.09000 * 109.47255 * 180.84387 * 6 5 4 37 37 H 1.09002 * 109.47380 * 60.84327 * 6 5 4 38 38 H 1.08999 * 109.47696 * 300.84364 * 6 5 4 39 39 H 1.09010 * 109.88626 * 120.39423 * 7 5 4 40 40 H 1.09000 * 109.88888 * 241.57822 * 7 5 4 41 41 H 1.09001 * 109.62076 * 245.48234 * 13 12 10 42 42 H 1.08995 * 109.62346 * 6.04854 * 13 12 10 43 43 H 1.09001 * 109.50724 * 180.46092 * 16 14 13 44 44 H 1.08995 * 109.50691 * 300.59611 * 16 14 13 45 45 H 1.09003 * 109.41443 * 180.68381 * 17 16 14 46 46 H 1.08998 * 109.42407 * 300.54789 * 17 16 14 47 47 H 1.09005 * 110.81187 * 180.38891 * 18 17 16 48 48 H 1.09007 * 108.37701 * 60.17644 * 18 17 16 49 49 H 1.09001 * 109.63066 * 353.96508 * 21 12 10 50 50 H 1.08997 * 109.62900 * 114.54640 * 21 12 10 51 51 H 0.97003 * 119.99547 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0848 -0.8063 1.2006 5 7 3.4312 -1.2423 0.7727 6 6 3.7611 -2.5593 1.3335 7 6 3.4691 -1.2709 -0.7009 8 6 2.0857 -0.8067 -1.2029 9 1 1.4474 -1.6631 -1.4205 10 6 2.2278 0.0757 -2.4163 11 8 1.8369 1.2233 -2.3806 12 7 2.7891 -0.4104 -3.5411 13 6 3.2714 -1.7975 -3.5931 14 6 2.6104 -2.4946 -4.7976 15 1 3.0441 -3.4824 -4.9526 16 6 1.0994 -2.6004 -4.5570 17 6 0.5133 -1.1953 -4.4045 18 6 0.7680 -0.3599 -5.6752 19 6 2.2789 -0.2717 -5.9229 20 1 2.4850 0.2640 -6.8496 21 6 2.9329 0.4417 -4.7296 22 7 2.8244 -1.6415 -5.9825 23 6 3.4971 -2.0989 -7.0841 24 1 4.0268 -1.4050 -7.7201 25 6 3.4982 -3.4543 -7.3835 26 7 2.5842 -4.2444 -6.8611 27 14 4.7969 -4.1571 -8.5276 28 1 5.9327 -4.6791 -7.7259 29 1 4.2072 -5.2607 -9.3273 30 1 5.2832 -3.0904 -9.4390 31 1 -0.3634 -1.0253 0.0689 32 1 -0.3634 0.5724 0.8535 33 1 -0.3634 0.4530 -0.9224 34 1 1.4522 -1.6708 1.4020 35 1 2.1544 -0.1719 2.0842 36 1 4.7624 -2.8493 1.0153 37 1 3.0398 -3.2960 0.9797 38 1 3.7258 -2.5101 2.4218 39 1 4.2420 -0.5940 -1.0651 40 1 3.6682 -2.2851 -1.0470 41 1 4.3549 -1.8040 -3.7118 42 1 2.9980 -2.3148 -2.6735 43 1 0.6301 -3.1007 -5.4041 44 1 0.9148 -3.1724 -3.6477 45 1 -0.5588 -1.2678 -4.2213 46 1 0.9913 -0.6924 -3.5639 47 1 0.3576 0.6442 -5.5674 48 1 0.2898 -0.8606 -6.5172 49 1 2.4371 1.3970 -4.5575 50 1 3.9904 0.6067 -4.9361 51 1 2.5848 -5.1915 -7.0706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039914330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = 4.191650 kcal Electronic energy + Delta-G solvation = -30554.324856 eV Core-core repulsion = 26875.256694 eV Total energy + Delta-G solvation = -3679.068162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.32203 -40.18962 -38.73893 -35.63705 -34.55595 -34.25439 -33.51248 -32.12559 -31.14943 -28.51902 -27.93096 -27.06583 -26.09706 -25.18694 -23.30459 -22.94530 -22.39547 -21.60052 -20.31525 -19.97043 -18.84938 -17.60573 -17.29372 -16.84101 -16.51309 -16.13127 -15.81489 -15.71716 -15.29100 -15.20589 -14.82341 -14.59793 -14.56850 -14.45509 -14.14513 -13.86783 -13.66923 -13.46427 -13.32732 -13.13147 -13.06579 -13.01668 -12.75792 -12.56268 -12.45951 -12.39624 -12.10301 -12.01964 -11.83790 -11.73665 -11.70966 -11.66338 -11.57817 -11.20361 -11.10154 -10.72669 -10.42203 -9.46421 -9.29970 -8.46483 -7.81893 -5.26281 1.48451 1.52177 1.58822 1.60446 2.04187 2.53574 3.00236 3.29986 3.36298 3.49963 3.50873 3.75083 4.01490 4.10906 4.14926 4.16470 4.23903 4.27356 4.32386 4.37635 4.44742 4.50578 4.52998 4.60467 4.62978 4.71827 4.74183 4.80894 4.81845 4.83518 4.86111 4.89969 4.96634 5.01269 5.06738 5.09342 5.13183 5.23553 5.29026 5.34412 5.38485 5.42619 5.53959 5.68505 5.75310 5.85558 5.91176 6.10416 6.41541 6.51033 7.16964 7.18559 7.84345 8.43593 9.21282 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.004524 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.851905 B = 6187.626359 C = 6921.417158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 H 0.074 0.926 4 C 0.050 3.950 5 N -0.546 5.546 6 C 0.017 3.983 7 C 0.057 3.943 8 C -0.127 4.127 9 H 0.109 0.891 10 C 0.527 3.473 11 O -0.577 6.577 12 N -0.589 5.589 13 C 0.097 3.903 14 C 0.174 3.826 15 H 0.084 0.916 16 C -0.103 4.103 17 C -0.131 4.131 18 C -0.118 4.118 19 C 0.148 3.852 20 H 0.072 0.928 21 C 0.110 3.890 22 N -0.592 5.592 23 C -0.258 4.258 24 H 0.062 0.938 25 C -0.037 4.037 26 N -0.918 5.918 27 Si 0.958 3.042 28 H -0.286 1.286 29 H -0.300 1.300 30 H -0.276 1.276 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.035 0.965 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.030 0.970 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 3.369 16.046 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.092 0.908 4 C -0.077 4.077 5 N -0.270 5.270 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.149 4.149 9 H 0.127 0.873 10 C 0.318 3.682 11 O -0.457 6.457 12 N -0.321 5.321 13 C -0.027 4.027 14 C 0.067 3.933 15 H 0.102 0.898 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.158 4.158 19 C 0.040 3.960 20 H 0.090 0.910 21 C -0.014 4.014 22 N -0.313 5.313 23 C -0.388 4.388 24 H 0.080 0.920 25 C -0.234 4.234 26 N -0.564 5.564 27 Si 0.787 3.213 28 H -0.213 1.213 29 H -0.227 1.227 30 H -0.201 1.201 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.103 0.897 50 H 0.081 0.919 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.880 4.130 16.184 16.726 hybrid contribution -0.104 -1.226 -1.727 2.121 sum -0.984 2.904 14.457 14.778 Atomic orbital electron populations 1.21658 0.93174 1.02407 1.02075 1.22108 0.96723 0.98976 0.91846 0.90789 1.23184 0.87964 0.98905 0.97664 1.63569 1.28275 1.28300 1.06865 1.22631 1.01292 0.88059 1.01106 1.22859 0.94524 1.01353 0.88361 1.22687 0.99857 0.99106 0.93238 0.87260 1.20475 0.76223 0.87566 0.83961 1.90639 1.51260 1.19969 1.83876 1.48145 1.58599 1.13385 1.11981 1.22687 0.98656 0.80878 1.00434 1.21154 0.93074 0.94872 0.84237 0.89790 1.21648 0.97705 0.95460 0.99386 1.22197 0.98883 0.96516 0.99322 1.22055 0.97465 0.98595 0.97642 1.21322 0.91620 0.87142 0.95867 0.90972 1.22034 1.00457 0.93809 0.85114 1.44561 1.63449 1.09600 1.13709 1.19380 1.23286 0.91871 1.04221 0.92003 1.25557 0.99348 0.97961 1.00522 1.70132 1.33342 1.04385 1.48504 0.85406 0.79448 0.77643 0.78773 1.21283 1.22686 1.20086 0.91605 0.90757 0.93951 0.91750 0.89013 0.90996 0.94700 0.90029 0.91564 0.90459 0.91816 0.88222 0.94588 0.92616 0.94281 0.89653 0.92087 0.95064 0.89744 0.91864 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.31 71.98 0.67 -2.06 16 2 C -0.08 -1.73 2.68 -9.41 -0.03 -1.76 16 3 H 0.07 2.01 7.49 -2.39 -0.02 1.99 16 4 C 0.05 0.90 6.20 86.77 0.54 1.44 16 5 N -0.55 -11.08 5.44 -911.73 -4.96 -16.05 16 6 C 0.02 0.27 9.12 127.69 1.16 1.43 16 7 C 0.06 1.30 5.20 86.64 0.45 1.75 16 8 C -0.13 -3.15 1.83 -10.36 -0.02 -3.17 16 9 H 0.11 2.59 7.71 -2.38 -0.02 2.57 16 10 C 0.53 16.80 4.31 87.66 0.38 17.18 16 11 O -0.58 -21.54 15.16 -3.03 -0.05 -21.59 16 12 N -0.59 -19.58 1.63 -816.22 -1.33 -20.91 16 13 C 0.10 3.22 5.18 86.66 0.45 3.67 16 14 C 0.17 7.27 2.63 45.27 0.12 7.39 16 15 H 0.08 4.08 5.89 -2.39 -0.01 4.06 16 16 C -0.10 -4.12 5.60 30.72 0.17 -3.95 16 17 C -0.13 -4.85 5.58 31.00 0.17 -4.67 16 18 C -0.12 -4.61 5.68 31.12 0.18 -4.43 16 19 C 0.15 5.93 3.58 45.12 0.16 6.09 16 20 H 0.07 2.91 8.01 -2.38 -0.02 2.89 16 21 C 0.11 3.91 5.89 86.51 0.51 4.42 16 22 N -0.59 -27.18 2.53 -644.71 -1.63 -28.81 16 23 C -0.26 -13.27 9.71 84.03 0.82 -12.45 16 24 H 0.06 3.19 7.90 -2.91 -0.02 3.16 16 25 C -0.04 -1.94 4.97 84.86 0.42 -1.52 16 26 N -0.92 -49.91 10.93 21.65 0.24 -49.68 16 27 Si 0.96 42.84 29.59 68.60 2.03 44.87 16 28 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 30 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 31 H 0.06 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.99 7.63 -2.39 -0.02 0.97 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.03 0.51 8.10 -2.39 -0.02 0.49 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.72 7.81 -2.38 -0.02 1.70 16 40 H 0.08 1.59 6.10 -2.39 -0.01 1.58 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.10 2.73 4.28 -2.39 -0.01 2.72 16 43 H 0.04 1.72 7.90 -2.39 -0.02 1.70 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 2.99 2.63 -2.40 -0.01 2.99 16 47 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.08 2.97 6.98 -2.39 -0.02 2.95 16 50 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 Total: -1.00 -60.11 368.45 1.35 -58.77 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.90 Total: 24.04 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.15 Total: 9.35 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -7.69 Total: -115.45 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -60.11 1.35 -58.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039914330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.961 kcal (2) G-P(sol) polarization free energy of solvation -60.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds