Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47439 * 111.00036 * 2 1 4 4 C 1.54315 * 107.23357 * 123.25949 * 3 2 1 5 5 C 1.55428 * 103.04911 * 22.28183 * 4 3 2 6 6 H 1.09002 * 111.00258 * 82.38419 * 5 4 3 7 7 C 1.52994 * 111.10946 * 206.29676 * 5 4 3 8 8 C 1.50693 * 109.47416 * 178.62430 * 7 5 4 9 9 O 1.21286 * 120.00108 * 0.02562 * 8 7 5 10 10 N 1.34778 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.46940 * 120.44367 * 359.72301 * 10 8 7 12 12 C 1.54091 * 107.88284 * 124.78111 * 11 10 8 13 13 H 1.09004 * 110.49052 * 173.14458 * 12 11 10 14 14 C 1.53375 * 109.82936 * 295.41188 * 12 11 10 15 15 C 1.53005 * 109.25144 * 60.25365 * 14 12 11 16 16 C 1.53010 * 109.80368 * 60.57366 * 15 14 12 17 17 C 1.53371 * 109.27431 * 299.44436 * 16 15 14 18 18 H 1.08997 * 110.59511 * 178.09682 * 17 16 15 19 19 C 1.46953 * 120.44019 * 180.02562 * 10 8 7 20 20 N 1.47570 * 108.49877 * 56.61487 * 17 16 15 21 21 C 1.36944 * 121.61064 * 122.00895 * 20 17 16 22 22 H 1.07991 * 119.99987 * 152.15553 * 21 20 17 23 23 C 1.38811 * 119.99555 * 332.15372 * 21 20 17 24 24 N 1.31621 * 119.99616 * 145.71120 * 23 21 20 25 25 Si 1.86796 * 120.00437 * 325.70595 * 23 21 20 26 26 H 1.48496 * 109.47312 * 84.62449 * 25 23 21 27 27 H 1.48499 * 109.47211 * 204.63001 * 25 23 21 28 28 H 1.48509 * 109.47038 * 324.62385 * 25 23 21 29 29 C 1.47843 * 110.99814 * 120.84125 * 2 1 3 30 30 H 1.09001 * 109.46882 * 299.15686 * 1 2 3 31 31 H 1.08993 * 109.47241 * 59.15649 * 1 2 3 32 32 H 1.08995 * 109.46918 * 179.16077 * 1 2 3 33 33 H 1.09005 * 109.88387 * 242.66610 * 3 2 1 34 34 H 1.08999 * 109.88953 * 3.68704 * 3 2 1 35 35 H 1.09002 * 110.70385 * 140.66907 * 4 3 2 36 36 H 1.09000 * 110.70620 * 263.71976 * 4 3 2 37 37 H 1.09001 * 109.46825 * 298.62900 * 7 5 4 38 38 H 1.09000 * 109.47037 * 58.62400 * 7 5 4 39 39 H 1.09005 * 109.62877 * 245.49445 * 11 10 8 40 40 H 1.09003 * 109.62278 * 6.04874 * 11 10 8 41 41 H 1.08999 * 109.51286 * 300.31501 * 14 12 11 42 42 H 1.09007 * 109.54369 * 180.20655 * 14 12 11 43 43 H 1.08999 * 109.41696 * 300.47609 * 15 14 12 44 44 H 1.09003 * 109.41960 * 180.67369 * 15 14 12 45 45 H 1.08994 * 109.50663 * 179.50506 * 16 15 14 46 46 H 1.08991 * 109.53554 * 59.39857 * 16 15 14 47 47 H 1.08999 * 109.62790 * 353.95578 * 19 10 8 48 48 H 1.08995 * 109.62985 * 114.34594 * 19 10 8 49 49 H 0.96996 * 119.99826 * 179.97438 * 24 23 21 50 50 H 1.09000 * 110.37702 * 332.46466 * 29 2 1 51 51 H 1.09008 * 110.37462 * 94.69512 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3059 0.0419 1.5450 6 1 4.1309 -0.2864 0.9126 7 6 3.6491 -0.1347 3.0254 8 6 3.9882 -1.5783 3.2938 9 8 3.9588 -2.3863 2.3898 10 7 4.3241 -1.9715 4.5384 11 6 4.3688 -0.9996 5.6396 12 6 3.4514 -1.5167 6.7645 13 1 3.5454 -0.8904 7.6517 14 6 1.9974 -1.5472 6.2774 15 6 1.8892 -2.4815 5.0705 16 6 2.3085 -3.8973 5.4718 17 6 3.7635 -3.8761 5.9564 18 1 4.0744 -4.8695 6.2798 19 6 4.6571 -3.3766 4.8109 20 7 3.8731 -2.9104 7.0668 21 6 4.3247 -3.2869 8.3036 22 1 4.8163 -2.5671 8.9411 23 6 4.1503 -4.5938 8.7378 24 7 5.0612 -5.1611 9.4999 25 14 2.6229 -5.5474 8.2406 26 1 2.8356 -6.1616 6.9055 27 1 2.3581 -6.6137 9.2396 28 1 1.4607 -4.6247 8.1816 29 6 1.9988 -0.7076 1.1851 30 1 -0.3633 0.5007 0.8975 31 1 -0.3633 0.5268 -0.8823 32 1 -0.3633 -1.0275 -0.0151 33 1 2.5697 1.5539 -0.9106 34 1 1.1754 2.0892 0.0659 35 1 3.8001 2.1033 0.9904 36 1 2.3754 1.9575 2.0684 37 1 4.5043 0.4924 3.2774 38 1 2.7931 0.1566 3.6341 39 1 5.3942 -0.8951 5.9944 40 1 3.9989 -0.0351 5.2918 41 1 1.6890 -0.5424 5.9886 42 1 1.3522 -1.9101 7.0776 43 1 2.5415 -2.1224 4.2746 44 1 0.8590 -2.4960 4.7146 45 1 2.2213 -4.5604 4.6111 46 1 1.6631 -4.2551 6.2738 47 1 4.4769 -3.9753 3.9181 48 1 5.7053 -3.4553 5.0991 49 1 4.9392 -6.0742 9.8036 50 1 1.2890 -0.6501 2.0102 51 1 2.2129 -1.7483 0.9414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039969366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = 25.668307 kcal Electronic energy + Delta-G solvation = -30060.884246 eV Core-core repulsion = 26382.747381 eV Total energy + Delta-G solvation = -3678.136865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.93419 -39.20250 -37.75612 -34.14798 -33.47253 -32.91381 -32.15182 -30.99445 -30.03274 -27.91953 -26.74752 -25.95445 -24.91913 -23.38578 -22.05219 -21.57981 -21.08282 -20.69532 -19.31610 -18.31160 -17.29527 -16.53211 -16.34391 -15.65958 -15.31555 -15.18099 -14.96724 -14.41711 -13.99518 -13.91461 -13.74943 -13.60363 -13.45773 -13.29381 -12.97117 -12.78505 -12.52325 -12.32388 -12.21418 -12.16982 -11.89379 -11.68438 -11.55674 -11.37021 -11.32432 -11.13643 -10.94243 -10.76793 -10.72646 -10.50174 -10.39439 -10.15091 -9.90942 -9.80675 -9.49414 -9.30918 -8.65922 -8.46450 -8.00137 -6.96010 -6.11817 -3.33702 2.83709 3.26544 3.31273 3.47254 3.49576 3.87862 4.35432 4.48007 4.50702 4.63698 4.68854 4.83979 5.04742 5.09918 5.16283 5.22963 5.25141 5.30714 5.37241 5.42951 5.48001 5.50708 5.51456 5.52592 5.55643 5.60410 5.67441 5.70779 5.75714 5.79533 5.89685 6.03724 6.14583 6.17692 6.18833 6.23033 6.25684 6.31461 6.33127 6.53921 6.60364 6.66827 6.72188 6.80798 6.90844 6.92455 6.99036 7.74007 7.82506 8.21613 8.42695 8.81251 9.61598 10.07371 11.03161 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.003827 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.049367 B = 7314.344079 C = 7617.674889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.041 3.959 4 C -0.140 4.140 5 C -0.078 4.078 6 H 0.091 0.909 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.547 6.547 10 N -0.594 5.594 11 C 0.098 3.902 12 C 0.149 3.851 13 H 0.085 0.915 14 C -0.127 4.127 15 C -0.135 4.135 16 C -0.139 4.139 17 C 0.148 3.852 18 H 0.093 0.907 19 C 0.103 3.897 20 N -0.590 5.590 21 C -0.265 4.265 22 H 0.084 0.916 23 C 0.039 3.961 24 N -0.883 5.883 25 Si 0.853 3.147 26 H -0.280 1.280 27 H -0.303 1.303 28 H -0.274 1.274 29 C 0.049 3.951 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.036 0.964 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.264 0.736 50 H 0.042 0.958 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 13.759 -14.400 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.087 4.087 4 C -0.178 4.178 5 C -0.097 4.097 6 H 0.110 0.890 7 C -0.174 4.174 8 C 0.302 3.698 9 O -0.426 6.426 10 N -0.327 5.327 11 C -0.027 4.027 12 C 0.042 3.958 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.173 4.173 16 C -0.178 4.178 17 C 0.041 3.959 18 H 0.111 0.889 19 C -0.021 4.021 20 N -0.312 5.312 21 C -0.392 4.392 22 H 0.102 0.898 23 C -0.163 4.163 24 N -0.523 5.523 25 Si 0.682 3.318 26 H -0.207 1.207 27 H -0.231 1.231 28 H -0.200 1.200 29 C -0.078 4.078 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.209 12.928 -15.157 20.591 hybrid contribution -1.441 -0.275 0.837 1.689 sum -6.650 12.653 -14.320 20.233 Atomic orbital electron populations 1.22526 0.87916 1.02146 1.00222 1.63599 1.07732 1.13861 1.40888 1.22820 0.97779 0.89664 0.98414 1.22910 0.99970 0.96830 0.98093 1.22068 0.98739 0.94209 0.94684 0.89023 1.21738 1.03466 0.94665 0.97481 1.20308 0.76839 0.90546 0.82116 1.90677 1.53553 1.54836 1.43541 1.48190 1.66444 1.10215 1.07844 1.22477 1.01265 0.90735 0.88213 1.21586 0.90663 0.88395 0.95173 0.89675 1.21975 0.98529 0.97902 0.98217 1.22034 1.00004 0.96035 0.99204 1.22166 0.98782 0.96701 1.00132 1.21434 0.92191 0.94846 0.87437 0.88926 1.22253 0.99656 0.80867 0.99336 1.45058 1.74704 1.03809 1.07673 1.18709 1.31155 0.96288 0.93083 0.89835 1.25262 0.97544 0.96605 0.96857 1.70034 1.31342 1.13263 1.37628 0.87457 0.87747 0.79513 0.77044 1.20720 1.23109 1.19969 1.23169 0.94342 0.99869 0.90393 0.95643 0.91602 0.91377 0.90602 0.92886 0.90576 0.91355 0.88724 0.88997 0.90820 0.90810 0.93295 0.92095 0.89592 0.94479 0.92849 0.92277 0.89854 0.91284 0.92619 0.93994 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.13 60.07 0.55 0.74 16 2 N -0.54 -6.05 5.44 -239.52 -1.30 -7.36 16 3 C 0.04 0.37 6.90 -2.84 -0.02 0.36 16 4 C -0.14 -1.19 6.42 -24.75 -0.16 -1.35 16 5 C -0.08 -0.85 2.63 -88.33 -0.23 -1.08 16 6 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 7 C -0.13 -1.45 3.55 -27.89 -0.10 -1.55 16 8 C 0.51 7.67 4.79 -10.99 -0.05 7.61 16 9 O -0.55 -9.79 13.96 5.55 0.08 -9.71 16 10 N -0.59 -9.44 1.63 -171.91 -0.28 -9.72 16 11 C 0.10 1.41 5.91 -3.23 -0.02 1.39 16 12 C 0.15 2.60 3.62 -65.94 -0.24 2.36 16 13 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 14 C -0.13 -2.08 5.64 -26.53 -0.15 -2.23 16 15 C -0.13 -2.30 5.55 -26.72 -0.15 -2.45 16 16 C -0.14 -2.75 4.89 -26.53 -0.13 -2.88 16 17 C 0.15 3.12 2.36 -66.82 -0.16 2.96 16 18 H 0.09 2.18 4.96 -51.93 -0.26 1.93 16 19 C 0.10 1.90 5.88 -3.47 -0.02 1.88 16 20 N -0.59 -12.94 2.28 -154.24 -0.35 -13.29 16 21 C -0.27 -6.93 10.07 -15.06 -0.15 -7.08 16 22 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 23 C 0.04 1.06 4.97 -17.43 -0.09 0.98 16 24 N -0.88 -25.86 13.97 55.49 0.78 -25.08 16 25 Si 0.85 21.37 23.59 -169.99 -4.01 17.36 16 26 H -0.28 -6.77 6.15 56.52 0.35 -6.43 16 27 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.27 -6.87 6.52 56.52 0.37 -6.50 16 29 C 0.05 0.61 5.49 -2.30 -0.01 0.60 16 30 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.43 7.58 -51.93 -0.39 0.03 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 37 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 38 H 0.09 0.92 7.66 -51.93 -0.40 0.53 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.81 5.90 -51.93 -0.31 0.50 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.41 2.55 -52.03 -0.13 1.28 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.28 4.87 -51.93 -0.25 1.03 16 47 H 0.08 1.54 6.98 -51.93 -0.36 1.18 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.04 0.52 7.63 -51.93 -0.40 0.12 16 51 H 0.09 1.41 7.10 -51.92 -0.37 1.04 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -30.19 361.62 -9.60 -39.79 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.83 Total: 2.32 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.13 Total: 0.24 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -1.16 Total: -55.45 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.01 Total: 17.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.19 -9.60 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039969366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.461 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds