Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47439 * 111.00036 * 2 1 4 4 C 1.54315 * 107.23357 * 123.25949 * 3 2 1 5 5 C 1.55428 * 103.04911 * 22.28183 * 4 3 2 6 6 H 1.09002 * 111.00258 * 82.38419 * 5 4 3 7 7 C 1.52994 * 111.10946 * 206.29676 * 5 4 3 8 8 C 1.50693 * 109.47416 * 178.62430 * 7 5 4 9 9 O 1.21286 * 120.00108 * 0.02562 * 8 7 5 10 10 N 1.34778 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.46940 * 120.44367 * 359.72301 * 10 8 7 12 12 C 1.54091 * 107.88284 * 124.78111 * 11 10 8 13 13 H 1.09004 * 110.49052 * 173.14458 * 12 11 10 14 14 C 1.53375 * 109.82936 * 295.41188 * 12 11 10 15 15 C 1.53005 * 109.25144 * 60.25365 * 14 12 11 16 16 C 1.53010 * 109.80368 * 60.57366 * 15 14 12 17 17 C 1.53371 * 109.27431 * 299.44436 * 16 15 14 18 18 H 1.08997 * 110.59511 * 178.09682 * 17 16 15 19 19 C 1.46953 * 120.44019 * 180.02562 * 10 8 7 20 20 N 1.47570 * 108.49877 * 56.61487 * 17 16 15 21 21 C 1.36944 * 121.61064 * 122.00895 * 20 17 16 22 22 H 1.07991 * 119.99987 * 152.15553 * 21 20 17 23 23 C 1.38811 * 119.99555 * 332.15372 * 21 20 17 24 24 N 1.31621 * 119.99616 * 145.71120 * 23 21 20 25 25 Si 1.86796 * 120.00437 * 325.70595 * 23 21 20 26 26 H 1.48496 * 109.47312 * 84.62449 * 25 23 21 27 27 H 1.48499 * 109.47211 * 204.63001 * 25 23 21 28 28 H 1.48509 * 109.47038 * 324.62385 * 25 23 21 29 29 C 1.47843 * 110.99814 * 120.84125 * 2 1 3 30 30 H 1.09001 * 109.46882 * 299.15686 * 1 2 3 31 31 H 1.08993 * 109.47241 * 59.15649 * 1 2 3 32 32 H 1.08995 * 109.46918 * 179.16077 * 1 2 3 33 33 H 1.09005 * 109.88387 * 242.66610 * 3 2 1 34 34 H 1.08999 * 109.88953 * 3.68704 * 3 2 1 35 35 H 1.09002 * 110.70385 * 140.66907 * 4 3 2 36 36 H 1.09000 * 110.70620 * 263.71976 * 4 3 2 37 37 H 1.09001 * 109.46825 * 298.62900 * 7 5 4 38 38 H 1.09000 * 109.47037 * 58.62400 * 7 5 4 39 39 H 1.09005 * 109.62877 * 245.49445 * 11 10 8 40 40 H 1.09003 * 109.62278 * 6.04874 * 11 10 8 41 41 H 1.08999 * 109.51286 * 300.31501 * 14 12 11 42 42 H 1.09007 * 109.54369 * 180.20655 * 14 12 11 43 43 H 1.08999 * 109.41696 * 300.47609 * 15 14 12 44 44 H 1.09003 * 109.41960 * 180.67369 * 15 14 12 45 45 H 1.08994 * 109.50663 * 179.50506 * 16 15 14 46 46 H 1.08991 * 109.53554 * 59.39857 * 16 15 14 47 47 H 1.08999 * 109.62790 * 353.95578 * 19 10 8 48 48 H 1.08995 * 109.62985 * 114.34594 * 19 10 8 49 49 H 0.96996 * 119.99826 * 179.97438 * 24 23 21 50 50 H 1.09000 * 110.37702 * 332.46466 * 29 2 1 51 51 H 1.09008 * 110.37462 * 94.69512 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3059 0.0419 1.5450 6 1 4.1309 -0.2864 0.9126 7 6 3.6491 -0.1347 3.0254 8 6 3.9882 -1.5783 3.2938 9 8 3.9588 -2.3863 2.3898 10 7 4.3241 -1.9715 4.5384 11 6 4.3688 -0.9996 5.6396 12 6 3.4514 -1.5167 6.7645 13 1 3.5454 -0.8904 7.6517 14 6 1.9974 -1.5472 6.2774 15 6 1.8892 -2.4815 5.0705 16 6 2.3085 -3.8973 5.4718 17 6 3.7635 -3.8761 5.9564 18 1 4.0744 -4.8695 6.2798 19 6 4.6571 -3.3766 4.8109 20 7 3.8731 -2.9104 7.0668 21 6 4.3247 -3.2869 8.3036 22 1 4.8163 -2.5671 8.9411 23 6 4.1503 -4.5938 8.7378 24 7 5.0612 -5.1611 9.4999 25 14 2.6229 -5.5474 8.2406 26 1 2.8356 -6.1616 6.9055 27 1 2.3581 -6.6137 9.2396 28 1 1.4607 -4.6247 8.1816 29 6 1.9988 -0.7076 1.1851 30 1 -0.3633 0.5007 0.8975 31 1 -0.3633 0.5268 -0.8823 32 1 -0.3633 -1.0275 -0.0151 33 1 2.5697 1.5539 -0.9106 34 1 1.1754 2.0892 0.0659 35 1 3.8001 2.1033 0.9904 36 1 2.3754 1.9575 2.0684 37 1 4.5043 0.4924 3.2774 38 1 2.7931 0.1566 3.6341 39 1 5.3942 -0.8951 5.9944 40 1 3.9989 -0.0351 5.2918 41 1 1.6890 -0.5424 5.9886 42 1 1.3522 -1.9101 7.0776 43 1 2.5415 -2.1224 4.2746 44 1 0.8590 -2.4960 4.7146 45 1 2.2213 -4.5604 4.6111 46 1 1.6631 -4.2551 6.2738 47 1 4.4769 -3.9753 3.9181 48 1 5.7053 -3.4553 5.0991 49 1 4.9392 -6.0742 9.8036 50 1 1.2890 -0.6501 2.0102 51 1 2.2129 -1.7483 0.9414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039969366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 5.960995 kcal Electronic energy + Delta-G solvation = -30061.738819 eV Core-core repulsion = 26382.747381 eV Total energy + Delta-G solvation = -3678.991438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.23126 -40.15477 -38.99942 -35.68008 -34.61033 -34.38877 -33.53385 -32.78671 -30.84853 -29.09338 -28.01948 -27.22760 -25.87396 -25.05925 -23.50358 -23.08077 -21.93878 -21.55739 -20.52054 -19.86679 -18.71853 -18.00011 -17.31070 -16.92415 -16.62732 -16.52357 -16.08866 -15.67500 -15.55650 -15.35889 -15.02337 -14.71024 -14.68232 -14.42005 -14.25547 -14.06631 -13.91970 -13.68282 -13.48448 -13.30049 -13.13849 -13.06303 -12.74512 -12.50964 -12.40369 -12.27767 -12.13483 -12.04199 -11.89117 -11.88452 -11.74322 -11.53516 -11.45022 -11.28325 -11.20640 -10.71247 -10.54617 -9.54776 -9.23874 -8.69194 -8.25195 -5.39823 1.27885 1.37968 1.44064 1.68195 2.03728 2.40568 2.91890 3.10561 3.24582 3.45188 3.76769 3.80639 3.93894 3.97108 4.00796 4.06608 4.10496 4.24262 4.32999 4.35420 4.42964 4.47559 4.51910 4.52933 4.58353 4.66016 4.69459 4.71040 4.74871 4.78266 4.82873 4.84259 4.92847 4.95316 4.98202 5.04297 5.06940 5.09812 5.15678 5.24403 5.27875 5.31478 5.42956 5.47497 5.61308 5.85028 6.04340 6.13155 6.17482 6.54982 6.87013 7.23973 7.59923 8.11614 8.93947 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.003827 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.049367 B = 7314.344079 C = 7617.674889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.558 5.558 3 C 0.037 3.963 4 C -0.128 4.128 5 C -0.076 4.076 6 H 0.071 0.929 7 C -0.125 4.125 8 C 0.510 3.490 9 O -0.580 6.580 10 N -0.597 5.597 11 C 0.104 3.896 12 C 0.140 3.860 13 H 0.091 0.909 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.139 4.139 17 C 0.145 3.855 18 H 0.057 0.943 19 C 0.113 3.887 20 N -0.603 5.603 21 C -0.241 4.241 22 H 0.063 0.937 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.275 1.275 27 H -0.316 1.316 28 H -0.273 1.273 29 C 0.052 3.948 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.037 0.963 43 H 0.097 0.903 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.260 0.740 50 H 0.043 0.957 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 17.719 -16.149 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.282 5.282 3 C -0.090 4.090 4 C -0.166 4.166 5 C -0.096 4.096 6 H 0.090 0.910 7 C -0.165 4.165 8 C 0.302 3.698 9 O -0.460 6.460 10 N -0.330 5.330 11 C -0.019 4.019 12 C 0.035 3.965 13 H 0.109 0.891 14 C -0.159 4.159 15 C -0.169 4.169 16 C -0.178 4.178 17 C 0.037 3.963 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.326 5.326 21 C -0.371 4.371 22 H 0.081 0.919 23 C -0.209 4.209 24 N -0.574 5.574 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.245 1.245 28 H -0.199 1.199 29 C -0.076 4.076 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.097 0.903 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.453 16.939 -16.953 24.819 hybrid contribution -1.040 -1.454 1.276 2.197 sum -7.493 15.485 -15.676 23.274 Atomic orbital electron populations 1.22545 0.87071 1.01953 1.01194 1.63517 1.08736 1.15365 1.40603 1.22903 0.98457 0.88644 0.99001 1.22881 1.00602 0.94963 0.98178 1.22006 0.97231 0.95879 0.94454 0.91002 1.21814 1.05534 0.91444 0.97708 1.21128 0.75495 0.92195 0.80962 1.90686 1.54561 1.56309 1.44449 1.48239 1.66740 1.09068 1.08938 1.22518 1.00714 0.92074 0.86633 1.21917 0.92292 0.85483 0.96851 0.89128 1.21924 0.96939 1.00110 0.96961 1.22046 1.00858 0.94149 0.99865 1.22136 0.97297 0.99042 0.99337 1.21361 0.93557 0.93325 0.88031 0.92446 1.21857 0.98345 0.83076 0.97874 1.45153 1.75176 1.06016 1.06302 1.18723 1.29019 0.95421 0.93887 0.91933 1.25661 0.99353 0.97864 0.98006 1.70118 1.32975 1.13648 1.40679 0.86617 0.85216 0.78225 0.76453 1.20230 1.24455 1.19915 1.23015 0.95353 0.98410 0.90799 0.94870 0.90330 0.92264 0.90626 0.91419 0.88878 0.89633 0.85626 0.86641 0.91025 0.85676 0.88523 0.94397 0.88515 0.93274 0.92692 0.94485 0.90311 0.92350 0.93035 0.93851 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.13 127.69 1.17 1.51 16 2 N -0.56 -11.32 5.44 -911.69 -4.96 -16.29 16 3 C 0.04 0.55 6.90 86.65 0.60 1.15 16 4 C -0.13 -1.55 6.42 31.88 0.20 -1.34 16 5 C -0.08 -1.39 2.63 -9.31 -0.02 -1.42 16 6 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 7 C -0.13 -2.08 3.55 29.84 0.11 -1.98 16 8 C 0.51 13.69 4.79 87.65 0.42 14.11 16 9 O -0.58 -19.99 13.96 -3.05 -0.04 -20.04 16 10 N -0.60 -17.34 1.63 -816.19 -1.33 -18.67 16 11 C 0.10 2.55 5.91 86.66 0.51 3.07 16 12 C 0.14 4.47 3.62 45.06 0.16 4.63 16 13 H 0.09 2.81 8.03 -2.38 -0.02 2.79 16 14 C -0.12 -3.48 5.64 30.72 0.17 -3.30 16 15 C -0.13 -4.10 5.55 30.60 0.17 -3.94 16 16 C -0.14 -5.42 4.89 30.72 0.15 -5.27 16 17 C 0.14 6.10 2.36 45.12 0.11 6.20 16 18 H 0.06 2.80 4.96 -2.39 -0.01 2.79 16 19 C 0.11 4.15 5.88 86.51 0.51 4.66 16 20 N -0.60 -26.18 2.28 -641.90 -1.46 -27.64 16 21 C -0.24 -12.84 10.07 84.03 0.85 -12.00 16 22 H 0.06 3.55 8.06 -2.92 -0.02 3.52 16 23 C -0.01 -0.66 4.97 84.86 0.42 -0.24 16 24 N -0.93 -56.73 13.97 21.65 0.30 -56.43 16 25 Si 0.90 46.03 23.59 68.60 1.62 47.64 16 26 H -0.28 -13.57 6.15 99.48 0.61 -12.96 16 27 H -0.32 -16.52 7.11 99.48 0.71 -15.82 16 28 H -0.27 -13.67 6.52 99.48 0.65 -13.02 16 29 C 0.05 1.17 5.49 86.77 0.48 1.64 16 30 H 0.03 0.50 8.09 -2.39 -0.02 0.48 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 0.80 7.58 -2.39 -0.02 0.78 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.79 8.05 -2.39 -0.02 0.77 16 37 H 0.13 1.42 7.92 -2.39 -0.02 1.41 16 38 H 0.12 1.48 7.66 -2.39 -0.02 1.46 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.13 1.85 5.90 -2.39 -0.01 1.84 16 41 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.10 2.84 2.55 -2.59 -0.01 2.84 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.04 1.59 4.87 -2.39 -0.01 1.58 16 47 H 0.08 2.94 6.98 -2.39 -0.02 2.93 16 48 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 50 H 0.04 0.94 7.63 -2.39 -0.02 0.92 16 51 H 0.06 1.72 7.10 -2.38 -0.02 1.71 16 Total: -1.00 -69.94 361.62 0.86 -69.08 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.75 Total: 14.86 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.00 Total: 7.49 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -7.46 Total: -119.03 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.04 Total: -20.04 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.62 Total: 47.64 kcal Total: -69.94 0.86 -69.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039969366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.041 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds