Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48556 * 111.00508 * 2 1 4 4 C 1.54376 * 104.59503 * 200.95767 * 3 2 1 5 5 C 1.54260 * 105.06149 * 23.85215 * 4 3 2 6 6 C 1.48563 * 111.00234 * 244.57424 * 2 1 3 7 7 H 1.09002 * 110.50573 * 40.21798 * 6 2 1 8 8 C 1.50694 * 110.41393 * 277.82521 * 6 2 1 9 9 O 1.21287 * 120.00318 * 344.82404 * 8 6 2 10 10 N 1.34771 * 120.00208 * 164.82279 * 8 6 2 11 11 C 1.48167 * 127.02701 * 359.97438 * 10 8 6 12 12 C 1.55042 * 103.31914 * 140.99636 * 11 10 8 13 13 C 1.54157 * 102.73468 * 36.98750 * 12 11 10 14 14 C 1.47612 * 127.03127 * 180.02562 * 10 8 6 15 15 C 1.52497 * 110.05250 * 219.41280 * 13 12 11 16 16 C 1.53129 * 109.60898 * 178.25681 * 15 13 12 17 17 C 1.52758 * 109.35213 * 60.39004 * 16 15 13 18 18 N 1.46930 * 109.12667 * 305.15068 * 17 16 15 19 19 C 1.36940 * 120.67679 * 234.00399 * 18 17 16 20 20 H 1.08002 * 119.99957 * 152.09936 * 19 18 17 21 21 C 1.38810 * 120.00123 * 331.82327 * 19 18 17 22 22 N 1.31613 * 119.99717 * 342.54674 * 21 19 18 23 23 Si 1.86803 * 120.00138 * 162.55027 * 21 19 18 24 24 H 1.48502 * 109.47273 * 94.09451 * 23 21 19 25 25 H 1.48494 * 109.46820 * 214.09704 * 23 21 19 26 26 H 1.48505 * 109.46774 * 334.09728 * 23 21 19 27 27 C 1.47031 * 118.64318 * 53.72497 * 18 17 16 28 28 H 1.08996 * 109.47426 * 175.42046 * 1 2 3 29 29 H 1.09003 * 109.46935 * 295.42687 * 1 2 3 30 30 H 1.08999 * 109.46606 * 55.41907 * 1 2 3 31 31 H 1.09003 * 110.41257 * 82.17750 * 3 2 1 32 32 H 1.08998 * 110.41067 * 319.73334 * 3 2 1 33 33 H 1.09000 * 110.32854 * 264.95498 * 4 3 2 34 34 H 1.09006 * 110.40850 * 142.79031 * 4 3 2 35 35 H 1.09004 * 110.32021 * 241.10195 * 5 4 3 36 36 H 1.09002 * 110.32576 * 118.89722 * 5 4 3 37 37 H 1.09004 * 110.64968 * 259.45350 * 11 10 8 38 38 H 1.08999 * 110.64733 * 22.36727 * 11 10 8 39 39 H 1.09008 * 110.75294 * 278.67735 * 12 11 10 40 40 H 1.08996 * 110.76011 * 155.30199 * 12 11 10 41 41 H 1.08989 * 109.97551 * 85.98536 * 14 10 8 42 42 H 1.09002 * 109.96725 * 324.71130 * 14 10 8 43 43 H 1.09006 * 109.44434 * 298.29819 * 15 13 12 44 44 H 1.09002 * 109.45164 * 58.23848 * 15 13 12 45 45 H 1.09003 * 109.50284 * 180.45587 * 16 15 13 46 46 H 1.08998 * 109.49971 * 300.54038 * 16 15 13 47 47 H 1.09002 * 109.49047 * 185.22952 * 17 16 15 48 48 H 1.09007 * 109.41463 * 65.02120 * 17 16 15 49 49 H 0.97009 * 120.00119 * 180.02562 * 22 21 19 50 50 H 1.08995 * 109.58109 * 67.25732 * 27 18 17 51 51 H 1.09004 * 109.58492 * 187.67534 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3868 0.0000 4 6 3.4434 1.2499 -0.5344 5 6 3.4433 -0.0541 -1.3584 6 6 2.0015 -0.5955 -1.2526 7 1 1.4105 -0.2731 -2.1099 8 6 2.0103 -2.0994 -1.1573 9 8 1.8828 -2.6395 -0.0789 10 7 2.1600 -2.8443 -2.2704 11 6 2.3264 -2.3518 -3.6579 12 6 3.3724 -3.3254 -4.2595 13 6 2.9884 -4.6744 -3.6198 14 6 2.1907 -4.3176 -2.3567 15 6 4.2455 -5.4546 -3.2505 16 6 3.8529 -6.7727 -2.5770 17 6 3.0129 -7.6048 -3.5442 18 7 1.8671 -6.8046 -3.9978 19 6 0.5892 -7.2807 -3.8728 20 1 -0.2359 -6.5917 -3.7684 21 6 0.3537 -8.6486 -3.8860 22 7 1.2704 -9.4696 -4.3525 23 14 -1.2643 -9.3241 -3.2416 24 1 -2.2164 -9.4884 -4.3694 25 1 -1.0291 -10.6407 -2.5965 26 1 -1.8337 -8.3799 -2.2467 27 6 2.1202 -5.4797 -4.5830 28 1 -0.3634 -1.0243 -0.0820 29 1 -0.3633 0.4413 0.9282 30 1 -0.3632 0.5833 -0.8461 31 1 2.0080 1.7916 1.0121 32 1 1.4101 2.0211 -0.6603 33 1 4.1484 1.1746 0.2935 34 1 3.6956 2.0991 -1.1695 35 1 4.1483 -0.7695 -0.9350 36 1 3.6938 0.1552 -2.3984 37 1 1.3847 -2.4142 -4.2035 38 1 2.7033 -1.3291 -3.6601 39 1 4.3822 -3.0342 -3.9702 40 1 3.2782 -3.3714 -5.3444 41 1 1.1758 -4.7072 -2.4346 42 1 2.6824 -4.7318 -1.4765 43 1 4.8201 -5.6651 -4.1526 44 1 4.8513 -4.8631 -2.5641 45 1 4.7527 -7.3252 -2.3065 46 1 3.2707 -6.5634 -1.6797 47 1 2.6546 -8.5005 -3.0368 48 1 3.6226 -7.8884 -4.4021 49 1 1.1058 -10.4256 -4.3621 50 1 2.6395 -5.5939 -5.5345 51 1 1.1735 -4.9630 -4.7408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040116424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = -21.532414 kcal Electronic energy + Delta-G solvation = -29155.906512 eV Core-core repulsion = 25475.722870 eV Total energy + Delta-G solvation = -3680.183642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.65193 -40.37332 -38.68668 -37.28478 -34.86065 -33.23675 -32.62034 -32.35756 -30.62887 -29.91589 -27.34129 -27.01951 -26.55531 -24.56114 -23.86930 -22.83057 -22.07641 -21.88522 -20.07012 -19.52933 -18.62817 -18.30601 -17.11261 -16.93798 -16.81784 -16.52517 -15.79182 -15.52154 -15.37481 -15.20707 -15.08471 -14.76730 -14.61367 -14.51608 -14.31225 -13.94112 -13.63045 -13.39879 -13.22149 -13.02578 -13.00472 -12.87167 -12.76764 -12.61434 -12.54247 -12.37634 -12.33110 -12.08741 -12.04779 -11.92448 -11.82992 -11.53460 -11.48227 -11.07538 -11.02964 -10.75947 -10.52010 -9.68591 -9.47699 -8.66015 -7.88536 -5.31920 1.41105 1.44447 1.53346 1.60749 1.89187 2.48524 3.03835 3.25835 3.39428 3.59699 3.60057 3.72215 3.82898 3.88121 3.95793 4.02439 4.24452 4.27206 4.33782 4.37287 4.38732 4.42536 4.48270 4.54089 4.58715 4.68465 4.73188 4.73781 4.88470 4.89243 4.92041 4.95049 4.98784 5.02141 5.07772 5.08908 5.12029 5.14577 5.20470 5.25187 5.34847 5.39856 5.48692 5.56893 5.64594 5.76672 5.77430 5.97734 6.38354 6.62385 7.14790 7.20987 7.86977 8.37711 9.17376 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003508 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.094163 B = 7979.105714 C = 8847.632554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.526 5.526 3 C 0.032 3.968 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.054 3.946 7 H 0.094 0.906 8 C 0.529 3.471 9 O -0.580 6.580 10 N -0.621 5.621 11 C 0.097 3.903 12 C -0.113 4.113 13 C -0.077 4.077 14 C 0.136 3.864 15 C -0.086 4.086 16 C -0.138 4.138 17 C 0.178 3.822 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.059 0.941 21 C -0.047 4.047 22 N -0.930 5.930 23 Si 0.956 3.044 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.162 3.838 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.037 0.963 47 H 0.046 0.954 48 H 0.002 0.998 49 H 0.249 0.751 50 H 0.028 0.972 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 25.324 0.704 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.058 4.058 7 H 0.112 0.888 8 C 0.318 3.682 9 O -0.459 6.459 10 N -0.355 5.355 11 C -0.024 4.024 12 C -0.151 4.151 13 C -0.080 4.080 14 C 0.013 3.987 15 C -0.124 4.124 16 C -0.177 4.177 17 C 0.053 3.947 18 N -0.330 5.330 19 C -0.387 4.387 20 H 0.077 0.923 21 C -0.242 4.242 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.203 1.203 27 C 0.036 3.964 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.046 0.954 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.527 24.631 1.829 25.547 hybrid contribution -1.566 -1.228 -0.068 1.991 sum 4.961 23.404 1.761 23.988 Atomic orbital electron populations 1.22464 0.87226 1.00949 1.02325 1.64991 1.09106 1.16936 1.34043 1.23247 0.95860 0.87966 1.02399 1.22316 0.96019 0.97230 0.99959 1.22292 0.91989 0.97499 1.02884 1.22626 0.99993 0.89217 0.93953 0.88849 1.20760 0.75404 0.89987 0.82049 1.90678 1.51161 1.74707 1.29315 1.49083 1.71376 1.06952 1.08082 1.22864 0.99889 0.99859 0.79807 1.22747 0.99515 0.91384 1.01472 1.21477 0.95671 0.96416 0.94401 1.21745 0.99047 0.79851 0.98027 1.21333 0.95704 0.94934 1.00405 1.22041 0.99203 0.97821 0.98632 1.20453 0.87089 0.93399 0.93794 1.44249 1.02428 1.16232 1.70101 1.19377 0.85619 0.90522 1.43196 0.92291 1.25654 1.00393 0.97364 1.00817 1.70168 1.36260 1.02437 1.48773 0.85432 0.80417 0.77419 0.78231 1.20832 1.21847 1.20327 1.21021 0.96841 0.85313 0.93182 0.94151 0.90004 0.93303 0.89434 0.91723 0.91147 0.87948 0.92553 0.87225 0.90456 0.86836 0.89010 0.87888 0.94408 0.93690 0.90968 0.91573 0.91459 0.94399 0.93573 0.97998 0.94160 0.95410 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.44 127.69 1.21 1.61 16 2 N -0.53 -12.03 4.92 -887.06 -4.36 -16.39 16 3 C 0.03 0.46 6.49 86.45 0.56 1.02 16 4 C -0.12 -1.38 7.00 31.49 0.22 -1.16 16 5 C -0.11 -1.65 6.22 31.49 0.20 -1.45 16 6 C 0.05 1.14 1.81 44.31 0.08 1.22 16 7 H 0.09 1.56 7.57 -2.39 -0.02 1.54 16 8 C 0.53 16.67 6.78 87.66 0.59 17.27 16 9 O -0.58 -24.70 16.90 -3.05 -0.05 -24.75 16 10 N -0.62 -18.00 3.30 -809.56 -2.67 -20.67 16 11 C 0.10 1.85 6.80 86.76 0.59 2.44 16 12 C -0.11 -2.26 6.15 31.68 0.19 -2.06 16 13 C -0.08 -2.39 0.62 -51.88 -0.03 -2.42 16 14 C 0.14 4.94 5.62 86.37 0.49 5.43 16 15 C -0.09 -2.69 4.43 30.47 0.13 -2.55 16 16 C -0.14 -5.37 5.86 30.56 0.18 -5.19 16 17 C 0.18 8.70 5.28 86.22 0.46 9.15 16 18 N -0.61 -30.23 2.80 -700.69 -1.96 -32.19 16 19 C -0.26 -14.33 9.59 84.03 0.81 -13.52 16 20 H 0.06 3.27 7.89 -2.91 -0.02 3.24 16 21 C -0.05 -2.66 4.90 84.86 0.42 -2.24 16 22 N -0.93 -55.67 11.22 21.65 0.24 -55.43 16 23 Si 0.96 46.37 29.59 68.60 2.03 48.40 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 27 C 0.16 6.28 4.84 86.16 0.42 6.69 16 28 H 0.04 1.09 7.96 -2.39 -0.02 1.07 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 0.79 7.97 -2.39 -0.02 0.77 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 0.69 7.90 -2.39 -0.02 0.67 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 1.12 7.85 -2.39 -0.02 1.10 16 36 H 0.11 0.95 7.49 -2.39 -0.02 0.93 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 38 H 0.11 1.29 6.34 -2.39 -0.02 1.28 16 39 H 0.09 1.54 7.84 -2.38 -0.02 1.52 16 40 H 0.10 1.73 7.79 -2.39 -0.02 1.71 16 41 H 0.04 1.64 7.63 -2.39 -0.02 1.62 16 42 H 0.04 1.86 6.34 -2.39 -0.02 1.85 16 43 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.04 1.60 6.59 -2.39 -0.02 1.59 16 47 H 0.05 2.59 6.05 -2.39 -0.01 2.58 16 48 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 49 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 50 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 51 H 0.05 1.98 7.91 -2.39 -0.02 1.96 16 Total: -1.00 -75.98 382.67 0.62 -75.36 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.89 Total: 11.46 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.50 Total: 14.21 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -8.75 Total: -124.68 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.98 0.62 -75.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040116424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.832 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds