Wall clock time and date at job start Fri Apr 10 2020 18:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00432 * 2 1 4 4 H 1.48501 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47252 * 300.00651 * 3 2 1 6 6 H 1.48508 * 109.46739 * 60.00145 * 3 2 1 7 7 C 1.38815 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00075 * 197.30804 * 7 2 1 9 9 N 1.36936 * 119.99949 * 17.02245 * 7 2 1 10 10 C 1.46938 * 120.68391 * 28.01642 * 9 7 2 11 11 C 1.53179 * 108.90126 * 125.97418 * 10 9 7 12 12 C 1.53135 * 109.29185 * 55.06508 * 11 10 9 13 13 C 1.52483 * 109.60308 * 299.51266 * 12 11 10 14 14 C 1.53839 * 110.22205 * 298.00058 * 13 12 11 15 15 C 1.54506 * 104.78454 * 240.91394 * 14 13 12 16 16 N 1.48183 * 104.63341 * 23.81486 * 15 14 13 17 17 C 1.34777 * 127.80182 * 140.69660 * 16 15 14 18 18 O 1.21285 * 120.00285 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99998 * 0.02562 * 17 16 15 20 20 N 1.46902 * 109.47357 * 179.97438 * 19 17 16 21 21 C 1.48535 * 110.99519 * 52.60413 * 20 19 17 22 22 C 1.54938 * 103.22336 * 159.71672 * 21 20 19 23 23 C 1.54592 * 102.92366 * 322.58973 * 22 21 20 24 24 C 1.47893 * 110.99995 * 170.00202 * 20 19 17 25 25 C 1.48251 * 104.39974 * 320.69635 * 16 15 14 26 26 C 1.47042 * 120.68606 * 207.74098 * 9 7 2 27 27 H 0.97000 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.56934 * 245.80321 * 10 9 7 29 29 H 1.09004 * 109.56443 * 6.15661 * 10 9 7 30 30 H 1.08995 * 109.50294 * 175.01250 * 11 10 9 31 31 H 1.09002 * 109.50521 * 295.12607 * 11 10 9 32 32 H 1.09002 * 109.44635 * 59.55644 * 12 11 10 33 33 H 1.09004 * 109.44942 * 179.50146 * 12 11 10 34 34 H 1.08993 * 110.37420 * 359.74388 * 14 13 12 35 35 H 1.08994 * 110.37161 * 122.08782 * 14 13 12 36 36 H 1.09001 * 110.39917 * 142.60190 * 15 14 13 37 37 H 1.08995 * 110.40527 * 264.90604 * 15 14 13 38 38 H 1.08996 * 109.47068 * 300.00500 * 19 17 16 39 39 H 1.09001 * 109.46777 * 59.99880 * 19 17 16 40 40 H 1.08996 * 110.67291 * 278.15695 * 21 20 19 41 41 H 1.09005 * 110.66784 * 41.28720 * 21 20 19 42 42 H 1.09006 * 110.72586 * 204.22739 * 22 21 20 43 43 H 1.09004 * 110.87413 * 81.02364 * 22 21 20 44 44 H 1.09003 * 110.30793 * 263.03532 * 23 22 21 45 45 H 1.08999 * 110.39194 * 140.91905 * 23 22 21 46 46 H 1.09004 * 109.91749 * 333.51086 * 24 20 19 47 47 H 1.09002 * 109.91873 * 94.80714 * 24 20 19 48 48 H 1.08998 * 110.42879 * 280.38204 * 25 16 15 49 49 H 1.09005 * 110.42751 * 157.90222 * 25 16 15 50 50 H 1.08999 * 109.57872 * 352.57423 * 26 9 7 51 51 H 1.08997 * 109.58015 * 112.99392 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0535 -1.2235 0.2777 9 7 1.3705 -2.3619 -0.3482 10 6 0.2258 -2.3398 -1.2692 11 6 0.4994 -3.3078 -2.4243 12 6 0.8117 -4.6959 -1.8580 13 6 2.0475 -4.6192 -0.9680 14 6 3.2684 -4.1726 -1.7907 15 6 4.2693 -5.3443 -1.6785 16 7 3.4293 -6.5264 -1.3736 17 6 3.5664 -7.7811 -1.8461 18 8 2.7914 -8.6475 -1.5000 19 6 4.6826 -8.1077 -2.8045 20 7 4.6161 -9.5296 -3.1675 21 6 3.2602 -9.8918 -3.6538 22 6 3.5074 -11.1946 -4.4553 23 6 4.8699 -10.9288 -5.1354 24 6 5.5392 -9.8359 -4.2816 25 6 2.4041 -6.0171 -0.4316 26 6 1.8187 -3.6558 0.1876 27 1 -0.4850 0.8400 0.0004 28 1 -0.6751 -2.6491 -0.7393 29 1 0.0925 -1.3316 -1.6617 30 1 -0.3795 -3.3660 -3.0663 31 1 1.3511 -2.9514 -3.0039 32 1 -0.0369 -5.0478 -1.2714 33 1 0.9982 -5.3890 -2.6784 34 1 2.9867 -4.0124 -2.8313 35 1 3.6985 -3.2643 -1.3688 36 1 4.7961 -5.4856 -2.6222 37 1 4.9790 -5.1619 -0.8716 38 1 4.5808 -7.4980 -3.7021 39 1 5.6415 -7.8987 -2.3301 40 1 2.5878 -10.0771 -2.8162 41 1 2.8626 -9.1109 -4.3021 42 1 2.7263 -11.3428 -5.2011 43 1 3.5702 -12.0547 -3.7886 44 1 4.7209 -10.5740 -6.1553 45 1 5.4773 -11.8339 -5.1355 46 1 5.7034 -8.9425 -4.8842 47 1 6.4879 -10.2011 -3.8881 48 1 2.8152 -5.9446 0.5753 49 1 1.5260 -6.6629 -0.4394 50 1 2.7496 -3.5204 0.7383 51 1 1.0548 -4.0608 0.8512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040531641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:23 Heat of formation + Delta-G solvation = -16.924210 kcal Electronic energy + Delta-G solvation = -28603.799566 eV Core-core repulsion = 24923.815751 eV Total energy + Delta-G solvation = -3679.983815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56307 -40.34373 -38.86455 -37.27376 -34.80259 -33.38203 -32.38784 -32.19358 -30.50626 -29.72093 -28.37784 -27.23721 -26.00627 -24.11205 -23.86447 -22.55459 -22.10164 -21.68433 -20.35934 -19.36321 -18.52912 -17.99632 -17.27281 -17.06119 -16.80409 -16.58867 -15.84660 -15.78227 -15.74951 -15.34480 -14.92895 -14.67115 -14.53133 -14.43311 -14.13739 -14.04730 -13.56813 -13.32335 -13.29333 -13.12032 -13.02244 -12.89428 -12.79843 -12.49425 -12.43202 -12.24721 -12.20220 -11.95328 -11.91057 -11.87748 -11.72510 -11.44951 -11.39961 -11.17142 -11.04999 -10.65138 -10.49619 -9.71622 -9.39842 -8.64475 -7.83751 -5.28468 1.48209 1.50729 1.60140 1.60529 1.86333 2.53690 3.04965 3.31160 3.37458 3.62383 3.74260 3.76246 3.82687 3.90575 3.98870 4.09066 4.24828 4.27319 4.33824 4.35763 4.38376 4.40194 4.49007 4.58760 4.65027 4.68228 4.74771 4.75205 4.83144 4.86569 4.94597 4.96361 4.99566 5.00450 5.06994 5.13478 5.15848 5.21896 5.27798 5.31585 5.35020 5.43730 5.52547 5.59571 5.68622 5.78845 5.86871 5.97094 6.41606 6.60161 7.16705 7.17783 7.88662 8.41883 9.23065 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.028452 B = 0.002704 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.885810 B =10353.245237 C =10618.357240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.601 5.601 10 C 0.176 3.824 11 C -0.128 4.128 12 C -0.085 4.085 13 C -0.076 4.076 14 C -0.109 4.109 15 C 0.105 3.895 16 N -0.619 5.619 17 C 0.527 3.473 18 O -0.571 6.571 19 C 0.039 3.961 20 N -0.522 5.522 21 C 0.032 3.968 22 C -0.124 4.124 23 C -0.127 4.127 24 C 0.033 3.967 25 C 0.122 3.878 26 C 0.161 3.839 27 H 0.247 0.753 28 H -0.012 1.012 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.539 -17.580 -11.086 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.324 5.324 10 C 0.050 3.950 11 C -0.167 4.167 12 C -0.123 4.123 13 C -0.079 4.079 14 C -0.147 4.147 15 C -0.017 4.017 16 N -0.353 5.353 17 C 0.317 3.683 18 O -0.450 6.450 19 C -0.092 4.092 20 N -0.247 5.247 21 C -0.095 4.095 22 C -0.162 4.162 23 C -0.165 4.165 24 C -0.095 4.095 25 C -0.001 4.001 26 C 0.035 3.965 27 H 0.056 0.944 28 H 0.006 0.994 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 12.224 -18.297 -10.461 24.365 hybrid contribution -0.686 1.846 -0.176 1.977 sum 11.538 -16.452 -10.637 22.736 Atomic orbital electron populations 1.70207 1.06808 1.25571 1.55936 1.25782 0.95920 1.01505 1.01732 0.85251 0.78933 0.80114 0.76421 1.18558 1.22061 1.22528 1.19538 0.92940 0.85570 1.39909 0.90935 1.44223 1.35470 1.01919 1.50784 1.20570 0.87668 0.97667 0.89052 1.22033 1.00799 0.95713 0.98192 1.21273 0.96494 0.96373 0.98116 1.21351 0.96033 0.93669 0.96834 1.22412 0.94229 0.97861 1.00221 1.22647 0.93227 0.82829 1.02994 1.49106 1.31665 1.08580 1.45922 1.20662 0.86042 0.80024 0.81530 1.90638 1.46773 1.46686 1.60921 1.22218 0.98194 0.90654 0.98156 1.64661 1.06371 1.16406 1.37302 1.23365 0.91330 0.96705 0.98115 1.22510 0.97861 0.96956 0.98895 1.22410 0.95992 0.99238 0.98880 1.23022 0.96805 0.98766 0.90859 1.22192 0.91806 0.93258 0.92871 1.20824 0.97315 0.85531 0.92798 0.94353 0.99382 0.92815 0.92079 0.92092 0.93618 0.92311 0.91219 0.90678 0.87877 0.89397 0.90067 0.85736 0.90208 0.95021 0.90219 0.91279 0.90413 0.89836 0.92461 0.89296 0.90487 0.91687 0.92041 0.97740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.04 11.18 21.65 0.24 -54.80 16 2 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 3 Si 0.96 43.65 29.59 68.60 2.03 45.68 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.25 -12.98 9.59 84.03 0.81 -12.17 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.60 -28.63 2.79 -700.74 -1.95 -30.58 16 10 C 0.18 8.36 5.31 86.36 0.46 8.82 16 11 C -0.13 -4.69 5.87 30.70 0.18 -4.51 16 12 C -0.08 -2.76 4.43 30.47 0.13 -2.63 16 13 C -0.08 -2.36 0.68 -52.03 -0.04 -2.40 16 14 C -0.11 -2.89 5.56 31.39 0.17 -2.72 16 15 C 0.10 2.04 6.92 86.57 0.60 2.64 16 16 N -0.62 -15.20 3.32 -808.26 -2.68 -17.89 16 17 C 0.53 13.83 7.63 87.66 0.67 14.50 16 18 O -0.57 -19.47 13.79 -3.04 -0.04 -19.51 16 19 C 0.04 0.72 4.50 85.56 0.38 1.10 16 20 N -0.52 -10.76 5.26 -887.57 -4.67 -15.43 16 21 C 0.03 0.73 5.30 86.65 0.46 1.19 16 22 C -0.12 -2.05 7.06 31.80 0.22 -1.83 16 23 C -0.13 -1.59 6.93 31.47 0.22 -1.37 16 24 C 0.03 0.46 6.69 86.45 0.58 1.04 16 25 C 0.12 3.45 6.13 86.35 0.53 3.98 16 26 C 0.16 6.27 4.80 86.00 0.41 6.69 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.05 2.90 6.03 -2.38 -0.01 2.89 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.85 6.53 -2.39 -0.02 1.83 16 35 H 0.07 2.27 7.63 -2.39 -0.02 2.26 16 36 H 0.10 1.41 7.31 -2.39 -0.02 1.39 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.23 7.62 -2.39 -0.02 1.21 16 39 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.33 5.97 -2.39 -0.01 2.31 16 41 H 0.03 0.72 8.02 -2.38 -0.02 0.70 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.66 7.57 -2.38 -0.02 0.65 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.08 2.09 7.84 -2.39 -0.02 2.07 16 49 H 0.06 2.04 7.59 -2.38 -0.02 2.02 16 50 H 0.06 2.29 7.91 -2.39 -0.02 2.27 16 51 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -66.96 380.10 0.02 -66.94 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.89 Total: 15.79 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 6.21 Total: 9.79 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -9.07 Total: -118.69 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.04 Total: -19.51 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.96 0.02 -66.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040531641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.019 kcal (2) G-P(sol) polarization free energy of solvation -66.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds