Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47844 * 111.00145 * 2 1 4 4 C 1.54901 * 104.79852 * 146.36212 * 3 2 1 5 5 C 1.55398 * 101.74213 * 323.01741 * 4 3 2 6 6 C 1.47445 * 110.99741 * 120.84018 * 2 1 3 7 7 H 1.09002 * 109.88659 * 117.17395 * 6 2 1 8 8 C 1.50700 * 109.88907 * 356.15127 * 6 2 1 9 9 O 1.21283 * 119.99936 * 305.32591 * 8 6 2 10 10 N 1.34773 * 120.00346 * 125.33067 * 8 6 2 11 11 C 1.47481 * 125.65818 * 359.97438 * 10 8 6 12 12 C 1.55024 * 104.89801 * 204.01888 * 11 10 8 13 13 C 1.54534 * 101.52566 * 323.61366 * 12 11 10 14 14 C 1.47181 * 125.66333 * 179.97438 * 10 8 6 15 15 C 1.52270 * 110.16429 * 276.40085 * 13 12 11 16 16 C 1.53318 * 109.41728 * 297.17749 * 15 13 12 17 17 N 1.46924 * 108.70393 * 306.48702 * 16 15 13 18 18 C 1.36937 * 120.56249 * 234.20527 * 17 16 15 19 19 H 1.08006 * 119.99470 * 32.84979 * 18 17 16 20 20 C 1.38804 * 120.00310 * 212.84426 * 18 17 16 21 21 N 1.31620 * 119.99836 * 14.98508 * 20 18 17 22 22 Si 1.86803 * 120.00274 * 194.98347 * 20 18 17 23 23 H 1.48496 * 109.47010 * 59.99745 * 22 20 18 24 24 H 1.48497 * 109.47398 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46997 * 300.00133 * 22 20 18 26 26 C 1.46934 * 118.87786 * 54.23275 * 17 16 15 27 27 C 1.52272 * 110.15496 * 153.27899 * 13 12 11 28 28 H 1.09000 * 109.47561 * 308.65205 * 1 2 3 29 29 H 1.09008 * 109.46735 * 68.64910 * 1 2 3 30 30 H 1.08997 * 109.47005 * 188.64489 * 1 2 3 31 31 H 1.09001 * 110.37400 * 265.19069 * 3 2 1 32 32 H 1.08997 * 110.37093 * 27.41519 * 3 2 1 33 33 H 1.08994 * 110.99421 * 81.01699 * 4 3 2 34 34 H 1.09001 * 110.99115 * 204.80321 * 4 3 2 35 35 H 1.09000 * 110.68392 * 277.17806 * 5 4 3 36 36 H 1.09001 * 110.84689 * 153.85986 * 5 4 3 37 37 H 1.08998 * 110.35665 * 85.16581 * 11 10 8 38 38 H 1.08996 * 110.35540 * 322.87183 * 11 10 8 39 39 H 1.09002 * 111.01606 * 205.55502 * 12 11 10 40 40 H 1.08993 * 111.01351 * 81.67404 * 12 11 10 41 41 H 1.09005 * 109.91177 * 59.13448 * 14 10 8 42 42 H 1.08996 * 109.91011 * 297.87168 * 14 10 8 43 43 H 1.09006 * 109.47765 * 57.15641 * 15 13 12 44 44 H 1.08999 * 109.48025 * 177.18730 * 15 13 12 45 45 H 1.09004 * 109.59495 * 186.72080 * 16 15 13 46 46 H 1.08996 * 109.72618 * 66.33066 * 16 15 13 47 47 H 0.97007 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.59926 * 185.99580 * 26 17 16 49 49 H 1.08994 * 109.72829 * 65.59796 * 26 17 16 50 50 H 1.09008 * 109.48234 * 182.79868 * 27 13 12 51 51 H 1.08997 * 109.48530 * 302.82314 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9181 0.2790 1.9329 6 6 1.9973 -0.7057 1.1819 7 1 2.5672 -1.5801 0.8676 8 6 0.8610 -1.1291 2.0766 9 8 0.0604 -0.3074 2.4700 10 7 0.7345 -2.4208 2.4398 11 6 1.6319 -3.5193 2.0359 12 6 0.7713 -4.8028 2.1592 13 6 -0.0818 -4.4838 3.4076 14 6 -0.3221 -2.9693 3.3052 15 6 0.6942 -4.8205 4.6737 16 6 0.9859 -6.3253 4.7077 17 7 -0.2784 -7.0543 4.5385 18 6 -0.6634 -8.0014 5.4495 19 1 -0.4017 -7.8865 6.4911 20 6 -1.3899 -9.1089 5.0344 21 7 -1.4587 -9.4089 3.7547 22 14 -2.2701 -10.1735 6.2920 23 1 -3.2612 -9.3504 7.0304 24 1 -2.9681 -11.2851 5.5977 25 1 -1.2800 -10.7316 7.2478 26 6 -1.1226 -6.7503 3.3749 27 6 -1.4007 -5.2427 3.3498 28 1 -0.3634 0.6418 0.8025 29 1 -0.3633 0.3742 -0.9572 30 1 -0.3633 -1.0160 0.1545 31 1 2.2149 1.7038 -1.0182 32 1 1.2881 2.0595 0.4705 33 1 4.1302 0.9281 0.2244 34 1 3.5498 2.2722 1.2634 35 1 2.3782 0.7706 2.7422 36 1 3.8017 -0.2335 2.3133 37 1 2.4906 -3.5729 2.7051 38 1 1.9608 -3.3809 1.0060 39 1 1.3978 -5.6788 2.3274 40 1 0.1419 -4.9373 1.2796 41 1 -1.3002 -2.7777 2.8638 42 1 -0.2636 -2.5165 4.2949 43 1 1.6337 -4.2678 4.6820 44 1 0.1026 -4.5450 5.5467 45 1 1.4348 -6.5891 5.6653 46 1 1.6692 -6.5859 3.8995 47 1 -1.9662 -10.1831 3.4647 48 1 -2.0637 -7.2944 3.4538 49 1 -0.6070 -7.0422 2.4600 50 1 -2.0140 -4.9719 4.2093 51 1 -1.9282 -4.9854 2.4313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040638036.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = 0.902274 kcal Electronic energy + Delta-G solvation = -28937.287344 eV Core-core repulsion = 25258.076543 eV Total energy + Delta-G solvation = -3679.210800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98533 -39.50495 -37.46724 -35.86020 -33.17102 -32.31284 -31.08371 -30.15093 -29.76090 -29.31754 -26.92065 -25.77166 -24.19255 -23.31815 -22.22186 -21.97104 -21.55212 -20.66311 -19.05949 -18.06876 -17.54519 -16.53182 -16.16983 -15.91884 -15.66642 -15.20356 -14.87526 -14.39883 -14.08072 -14.02334 -13.69736 -13.59557 -13.20406 -13.11955 -12.90338 -12.82467 -12.58309 -12.34838 -12.15423 -11.99836 -11.71316 -11.56274 -11.46837 -11.40717 -11.25321 -11.11534 -11.07832 -10.76620 -10.70760 -10.50205 -10.29474 -10.13304 -10.06455 -9.86840 -9.56475 -9.41730 -8.71765 -8.48706 -8.39006 -6.61072 -5.81367 -3.28333 2.44557 2.94278 3.36712 3.42538 3.43878 3.78816 4.18231 4.34601 4.44262 4.47744 4.71971 4.77489 4.90812 5.00826 5.09353 5.14213 5.26619 5.29896 5.36303 5.38545 5.41578 5.46246 5.51726 5.55226 5.58880 5.64288 5.74101 5.76661 5.86860 5.88434 5.92966 5.97296 6.07425 6.11908 6.20798 6.24651 6.33110 6.49991 6.58349 6.62618 6.65173 6.69017 6.71447 6.83033 6.96270 7.31975 7.50790 7.60944 7.78758 8.08291 8.46589 9.20477 9.82340 10.41646 11.26916 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.002697 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.149120 B =10381.133723 C =10536.086818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.509 5.509 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.128 4.128 6 C 0.053 3.947 7 H 0.103 0.897 8 C 0.516 3.484 9 O -0.546 6.546 10 N -0.609 5.609 11 C 0.096 3.904 12 C -0.123 4.123 13 C -0.055 4.055 14 C 0.115 3.885 15 C -0.119 4.119 16 C 0.147 3.853 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.062 0.938 20 C 0.008 3.992 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.177 3.823 27 C -0.127 4.127 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.079 0.921 49 H 0.021 0.979 50 H 0.057 0.943 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 18.023 -7.284 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.234 5.234 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.058 4.058 7 H 0.121 0.879 8 C 0.304 3.696 9 O -0.424 6.424 10 N -0.342 5.342 11 C -0.027 4.027 12 C -0.160 4.160 13 C -0.056 4.056 14 C -0.007 4.007 15 C -0.158 4.158 16 C 0.020 3.980 17 N -0.312 5.312 18 C -0.387 4.387 19 H 0.079 0.921 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.051 3.949 27 C -0.166 4.166 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.039 0.961 50 H 0.076 0.924 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.487 18.110 -7.628 21.406 hybrid contribution -0.853 -0.310 1.287 1.575 sum 7.635 17.800 -6.340 20.380 Atomic orbital electron populations 1.22911 0.86912 1.02511 1.01886 1.64064 1.09162 1.14687 1.35501 1.23151 0.95716 0.89424 1.00662 1.22733 0.97728 0.99301 0.96634 1.22785 0.99069 0.96450 0.98392 1.22673 0.94235 0.99284 0.89594 0.87883 1.20663 0.86867 0.80894 0.81176 1.90662 1.44810 1.50786 1.56189 1.48720 1.29320 1.06945 1.49211 1.22521 0.93500 0.86658 0.99999 1.22881 0.98417 0.96491 0.98241 1.20967 0.97331 0.91597 0.95669 1.22151 0.90579 0.94056 0.93961 1.21928 0.98365 0.99459 0.96053 1.20954 0.89209 0.89152 0.98670 1.43962 1.17405 1.42834 1.27030 1.19084 1.32287 0.98537 0.88789 0.92081 1.25151 1.01745 0.96393 0.95864 1.70003 1.43068 1.27725 1.13647 0.86399 0.79823 0.79849 0.80832 1.20979 1.21627 1.20835 1.20699 0.96517 0.88575 0.89079 1.22120 0.94192 1.00021 1.00312 0.91948 0.91724 0.91858 0.89818 0.93027 0.90328 0.90427 0.90450 0.90000 0.91137 0.90650 0.88763 0.90758 0.91657 0.91723 0.93164 0.92152 0.92872 0.96244 0.93562 0.90242 0.96056 0.92444 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 8.22 60.07 0.49 0.56 16 2 N -0.51 -5.69 5.44 -232.95 -1.27 -6.96 16 3 C 0.04 0.35 6.73 -2.30 -0.02 0.33 16 4 C -0.13 -0.96 7.08 -24.46 -0.17 -1.13 16 5 C -0.13 -1.19 6.47 -24.77 -0.16 -1.35 16 6 C 0.05 0.59 3.63 -67.87 -0.25 0.34 16 7 H 0.10 1.03 6.09 -51.93 -0.32 0.71 16 8 C 0.52 7.14 4.89 -10.99 -0.05 7.09 16 9 O -0.55 -9.18 14.21 5.55 0.08 -9.10 16 10 N -0.61 -8.20 3.33 -170.68 -0.57 -8.77 16 11 C 0.10 1.10 6.12 -2.44 -0.01 1.09 16 12 C -0.12 -1.69 4.92 -24.86 -0.12 -1.82 16 13 C -0.05 -0.85 0.55 -154.09 -0.09 -0.93 16 14 C 0.11 1.70 6.05 -3.32 -0.02 1.68 16 15 C -0.12 -1.93 4.74 -26.94 -0.13 -2.06 16 16 C 0.15 2.88 6.18 -3.65 -0.02 2.85 16 17 N -0.59 -14.08 2.96 -172.16 -0.51 -14.59 16 18 C -0.26 -6.88 9.53 -15.06 -0.14 -7.02 16 19 H 0.06 1.62 7.87 -52.48 -0.41 1.21 16 20 C 0.01 0.21 4.93 -17.43 -0.09 0.13 16 21 N -0.90 -25.57 11.42 55.49 0.63 -24.93 16 22 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.18 3.98 4.99 -3.64 -0.02 3.96 16 27 C -0.13 -2.29 4.72 -26.94 -0.13 -2.42 16 28 H 0.06 0.87 5.86 -51.93 -0.30 0.56 16 29 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.50 7.63 -51.93 -0.40 0.10 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.84 7.65 -51.93 -0.40 0.45 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.74 7.74 -51.93 -0.40 0.34 16 38 H 0.08 0.75 6.88 -51.93 -0.36 0.39 16 39 H 0.09 1.39 6.08 -51.93 -0.32 1.07 16 40 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 41 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 42 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 43 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 46 H 0.02 0.38 6.48 -51.93 -0.34 0.04 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.08 2.04 6.33 -51.93 -0.33 1.72 16 49 H 0.02 0.50 7.56 -51.93 -0.39 0.11 16 50 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 51 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -30.07 373.59 -10.82 -40.88 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.86 Total: 0.19 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.92 Total: 1.31 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -1.71 Total: -55.25 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.07 -10.82 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040638036.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.786 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds