Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47908 * 110.99778 * 2 1 4 4 C 1.53993 * 107.05644 * 145.84087 * 3 2 1 5 5 C 1.54603 * 105.13882 * 358.77706 * 4 3 2 6 6 H 1.09002 * 110.72296 * 96.57982 * 5 4 3 7 7 C 1.50704 * 110.72142 * 219.68160 * 5 4 3 8 8 O 1.21276 * 120.00300 * 357.55460 * 7 5 4 9 9 N 1.34777 * 119.99706 * 177.27407 * 7 5 4 10 10 C 1.47078 * 125.62994 * 0.30048 * 9 7 5 11 11 C 1.54451 * 107.30070 * 180.96768 * 10 9 7 12 12 C 1.54394 * 102.86790 * 21.50406 * 11 10 9 13 13 C 1.47568 * 125.62803 * 179.97438 * 9 7 5 14 14 C 1.52110 * 110.50942 * 207.35886 * 12 11 10 15 15 C 1.53341 * 109.44482 * 295.90757 * 14 12 11 16 16 N 1.46928 * 108.68928 * 306.70578 * 15 14 12 17 17 C 1.36937 * 120.55259 * 234.36814 * 16 15 14 18 18 H 1.08001 * 120.00295 * 152.40846 * 17 16 15 19 19 C 1.38811 * 120.00270 * 332.40608 * 17 16 15 20 20 N 1.31616 * 120.00241 * 159.35324 * 19 17 16 21 21 Si 1.86804 * 119.99672 * 339.36378 * 19 17 16 22 22 H 1.48500 * 109.47349 * 93.26733 * 21 19 17 23 23 H 1.48504 * 109.46725 * 213.26808 * 21 19 17 24 24 H 1.48502 * 109.47169 * 333.26431 * 21 19 17 25 25 C 1.46941 * 118.89732 * 54.34471 * 16 15 14 26 26 C 1.52106 * 110.50567 * 83.33305 * 12 11 10 27 27 C 1.48724 * 111.04080 * 117.57603 * 2 1 3 28 28 H 1.09008 * 109.46912 * 60.12454 * 1 2 3 29 29 H 1.08996 * 109.46643 * 180.11990 * 1 2 3 30 30 H 1.08996 * 109.47405 * 300.12459 * 1 2 3 31 31 H 1.08999 * 109.91596 * 26.49436 * 3 2 1 32 32 H 1.08997 * 110.08427 * 265.28870 * 3 2 1 33 33 H 1.09004 * 110.31119 * 239.86385 * 4 3 2 34 34 H 1.08995 * 110.30915 * 117.68870 * 4 3 2 35 35 H 1.09006 * 109.88116 * 300.39692 * 10 9 7 36 36 H 1.09002 * 109.87802 * 61.54032 * 10 9 7 37 37 H 1.08997 * 110.73804 * 139.85017 * 11 10 9 38 38 H 1.09002 * 110.73253 * 262.98256 * 11 10 9 39 39 H 1.08996 * 110.37922 * 275.52659 * 13 9 7 40 40 H 1.09001 * 110.37589 * 37.87326 * 13 9 7 41 41 H 1.08997 * 109.47538 * 55.89830 * 14 12 11 42 42 H 1.08994 * 109.47173 * 175.91713 * 14 12 11 43 43 H 1.08993 * 109.60439 * 186.94146 * 15 14 12 44 44 H 1.09004 * 109.60475 * 66.45967 * 15 14 12 45 45 H 0.97004 * 119.99800 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.60218 * 185.89197 * 25 16 15 47 47 H 1.08997 * 109.73150 * 65.49151 * 25 16 15 48 48 H 1.08999 * 109.47515 * 184.07821 * 26 12 11 49 49 H 1.08998 * 109.47800 * 304.09595 * 26 12 11 50 50 H 1.09005 * 110.84002 * 81.96571 * 27 2 1 51 51 H 1.09003 * 110.58879 * 318.77237 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6531 0.6581 7 6 3.9511 -0.1301 2.7359 8 8 4.2181 0.9031 3.3120 9 7 4.0980 -1.3114 3.3680 10 6 3.8127 -2.6335 2.7903 11 6 4.1028 -3.6849 3.8838 12 6 4.0116 -2.8607 5.1861 13 6 4.5781 -1.4922 4.7516 14 6 4.8804 -3.4795 6.2705 15 6 4.3419 -4.8710 6.6240 16 7 2.9149 -4.7538 6.9538 17 6 2.4346 -5.2281 8.1452 18 1 1.5560 -4.7834 8.5888 19 6 3.0768 -6.2806 8.7829 20 7 2.8966 -6.4777 10.0717 21 14 4.1971 -7.4171 7.8119 22 1 5.5962 -6.9272 7.9004 23 1 4.1167 -8.7895 8.3733 24 1 3.7690 -7.4380 6.3901 25 6 2.0118 -4.1185 5.9842 26 6 2.5639 -2.7313 5.6345 27 6 2.0030 -0.6426 1.2304 28 1 -0.3633 0.5119 -0.8912 29 1 -0.3632 -1.0277 0.0022 30 1 -0.3634 0.5157 0.8888 31 1 1.2758 2.0561 0.4572 32 1 2.2117 1.7002 -1.0202 33 1 3.2135 2.0430 1.6768 34 1 4.1469 1.6455 0.2025 35 1 2.7660 -2.6892 2.4909 36 1 4.4565 -2.8081 1.9282 37 1 3.3492 -4.4723 3.8719 38 1 5.1005 -4.1059 3.7594 39 1 5.6677 -1.5042 4.7768 40 1 4.1916 -0.7008 5.3939 41 1 5.9050 -3.5674 5.9091 42 1 4.8608 -2.8462 7.1573 43 1 4.8844 -5.2658 7.4829 44 1 4.4663 -5.5388 5.7715 45 1 3.3458 -7.2130 10.5174 46 1 1.0186 -4.0173 6.4214 47 1 1.9538 -4.7272 5.0819 48 1 2.5115 -2.0875 6.5125 49 1 1.9715 -2.2968 4.8293 50 1 2.0093 -1.7279 1.1296 51 1 1.4243 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040937288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = 0.356648 kcal Electronic energy + Delta-G solvation = -28945.900381 eV Core-core repulsion = 25266.665921 eV Total energy + Delta-G solvation = -3679.234461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83285 -39.43992 -38.00161 -36.16008 -33.27124 -32.49166 -31.29010 -30.54458 -29.74630 -29.48289 -27.21567 -26.08587 -24.04734 -23.53536 -22.77445 -21.86897 -21.41333 -20.92704 -19.27216 -18.31209 -17.49013 -16.58740 -16.31147 -15.96542 -15.88823 -15.37545 -14.87424 -14.53539 -14.35624 -13.97206 -13.92576 -13.88640 -13.56653 -13.39380 -13.29166 -12.91878 -12.72657 -12.45969 -12.29414 -12.17076 -11.90170 -11.84707 -11.73540 -11.72455 -11.51645 -11.26555 -10.99321 -10.90299 -10.80419 -10.60757 -10.48630 -10.05901 -10.00452 -9.89863 -9.65895 -9.43387 -8.84849 -8.70401 -8.60988 -6.98648 -5.96832 -3.32691 2.48178 2.84428 3.29141 3.45637 3.47932 3.65639 4.16916 4.25106 4.40618 4.50443 4.57506 4.69747 4.84775 4.87667 4.93148 4.95926 4.99552 5.09485 5.11763 5.16254 5.25555 5.31433 5.37812 5.45018 5.49625 5.53671 5.55859 5.61921 5.74841 5.76206 5.78634 5.82857 5.85635 5.93675 5.97636 6.03741 6.13447 6.20282 6.35202 6.41207 6.43945 6.45281 6.58800 6.61798 6.65510 6.66859 6.92840 7.43840 7.94845 8.04496 8.31244 8.92579 9.70240 10.07781 11.19267 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.003076 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.447158 B = 9100.586064 C = 9473.940055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.118 4.118 5 C -0.109 4.109 6 H 0.108 0.892 7 C 0.535 3.465 8 O -0.543 6.543 9 N -0.612 5.612 10 C 0.099 3.901 11 C -0.127 4.127 12 C -0.056 4.056 13 C 0.114 3.886 14 C -0.119 4.119 15 C 0.129 3.871 16 N -0.605 5.605 17 C -0.260 4.260 18 H 0.084 0.916 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.150 3.850 26 C -0.117 4.117 27 C 0.045 3.955 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.262 0.738 46 H 0.062 0.938 47 H 0.023 0.977 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.093 0.907 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 11.472 -21.275 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.156 4.156 5 C -0.131 4.131 6 H 0.126 0.874 7 C 0.323 3.677 8 O -0.420 6.420 9 N -0.345 5.345 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.057 4.057 13 C -0.008 4.008 14 C -0.159 4.159 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.388 4.388 18 H 0.102 0.898 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.024 3.976 26 C -0.157 4.157 27 C -0.083 4.083 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.111 0.889 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.488 11.711 -21.327 24.336 hybrid contribution 0.422 -0.367 0.260 0.617 sum 0.910 11.344 -21.067 23.945 Atomic orbital electron populations 1.22536 0.87432 1.02502 1.00943 1.64767 1.08475 1.15083 1.36236 1.22919 0.95868 0.89801 1.00728 1.22364 0.97664 0.95226 1.00362 1.22172 0.98012 0.99181 0.93731 0.87429 1.20033 0.77691 0.82131 0.87891 1.90689 1.51417 1.32251 1.67652 1.48542 1.65211 1.05764 1.15009 1.22229 1.00819 0.82297 0.97026 1.22748 1.03166 0.97288 0.93249 1.21034 0.97013 0.92882 0.94810 1.22400 0.98554 0.98028 0.81830 1.21859 0.96977 0.99450 0.97630 1.21344 0.85995 0.93628 0.98736 1.44335 1.01550 1.69083 1.17849 1.18923 1.13472 1.11710 0.94717 0.89799 1.25288 0.98768 0.97837 0.95711 1.69840 1.45458 1.31902 1.07947 0.86942 0.80139 0.80635 0.80921 1.21656 1.23234 1.19542 1.20957 0.93868 0.90623 0.92128 1.21809 0.93690 0.99960 1.00192 1.23297 0.92808 1.00342 0.91847 0.91130 0.90975 0.95164 0.93470 0.90033 0.89393 0.90469 0.91141 0.91530 0.89127 0.90633 0.91530 0.90459 0.92508 0.91319 0.90949 0.95603 0.92775 0.91936 0.95885 0.91710 0.92863 0.88891 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.40 60.07 0.56 0.67 16 2 N -0.52 -4.61 5.55 -238.54 -1.32 -5.94 16 3 C 0.03 0.29 6.70 -2.75 -0.02 0.27 16 4 C -0.12 -1.11 6.32 -25.37 -0.16 -1.27 16 5 C -0.11 -1.07 2.89 -89.90 -0.26 -1.33 16 6 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 7 C 0.53 6.92 7.21 -10.98 -0.08 6.84 16 8 O -0.54 -8.98 15.72 5.56 0.09 -8.89 16 9 N -0.61 -7.45 3.32 -170.62 -0.57 -8.02 16 10 C 0.10 0.99 5.72 -2.97 -0.02 0.97 16 11 C -0.13 -1.51 4.91 -25.24 -0.12 -1.64 16 12 C -0.06 -0.80 0.55 -153.98 -0.08 -0.88 16 13 C 0.11 1.53 5.82 -2.75 -0.02 1.52 16 14 C -0.12 -1.96 4.84 -27.01 -0.13 -2.09 16 15 C 0.13 2.63 3.93 -3.63 -0.01 2.61 16 16 N -0.60 -13.65 2.75 -172.12 -0.47 -14.12 16 17 C -0.26 -7.09 10.02 -15.06 -0.15 -7.24 16 18 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 20 N -0.91 -27.58 13.97 55.49 0.78 -26.80 16 21 Si 0.88 21.83 24.36 -169.99 -4.14 17.69 16 22 H -0.29 -6.88 6.63 56.52 0.37 -6.51 16 23 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 24 H -0.27 -6.47 6.64 56.52 0.38 -6.10 16 25 C 0.15 2.75 6.20 -3.62 -0.02 2.73 16 26 C -0.12 -1.81 4.87 -27.01 -0.13 -1.94 16 27 C 0.05 0.41 5.17 -1.79 -0.01 0.40 16 28 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.23 8.01 -51.93 -0.42 -0.19 16 31 H 0.05 0.38 7.73 -51.93 -0.40 -0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.99 6.88 -51.93 -0.36 0.63 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.64 5.95 -51.93 -0.31 0.33 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.14 6.18 -51.93 -0.32 0.82 16 38 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 39 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 40 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 41 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.66 4.46 -51.93 -0.23 1.43 16 44 H 0.03 0.51 6.60 -51.93 -0.34 0.17 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 47 H 0.02 0.40 6.56 -51.93 -0.34 0.06 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.05 0.74 7.82 -51.93 -0.41 0.33 16 50 H 0.09 0.76 6.32 -51.93 -0.33 0.43 16 51 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -31.73 371.64 -9.71 -41.45 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.93 Total: -1.15 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.74 Total: 0.19 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -1.59 Total: -54.88 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.73 -9.71 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040937288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.805 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds