Wall clock time and date at job start Fri Apr 10 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.06034 * 2 1 4 4 C 1.53995 * 109.91711 * 238.80035 * 2 1 3 5 5 H 1.08997 * 110.39275 * 120.46172 * 4 2 1 6 6 C 1.50703 * 110.30933 * 358.33134 * 4 2 1 7 7 O 1.21282 * 120.00478 * 274.94034 * 6 4 2 8 8 N 1.34780 * 119.99855 * 94.94219 * 6 4 2 9 9 C 1.48279 * 127.72039 * 0.02562 * 8 6 4 10 10 C 1.54752 * 104.67262 * 141.26548 * 9 8 6 11 11 C 1.52879 * 104.40713 * 23.63994 * 10 9 8 12 12 C 1.53718 * 111.74441 * 237.41922 * 11 10 9 13 13 C 1.54585 * 102.78238 * 273.35604 * 12 11 10 14 14 N 1.47136 * 107.33291 * 339.13136 * 13 12 11 15 15 C 1.36935 * 125.60509 * 179.06953 * 14 13 12 16 16 H 1.08000 * 119.99890 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00186 * 359.96728 * 15 14 13 18 18 N 1.31628 * 119.99803 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46952 * 60.00260 * 19 17 15 21 21 H 1.48500 * 109.47472 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47076 * 300.00514 * 19 17 15 23 23 C 1.47710 * 108.78609 * 359.06493 * 14 13 12 24 24 C 1.48482 * 127.72491 * 180.02562 * 8 6 4 25 25 C 1.54599 * 105.13902 * 239.42221 * 4 2 1 26 26 C 1.54944 * 102.91979 * 338.03783 * 25 4 2 27 27 N 1.47900 * 109.91907 * 121.20523 * 2 1 3 28 28 C 1.46898 * 111.00172 * 265.20159 * 27 2 1 29 29 H 1.09008 * 109.46893 * 183.62872 * 1 2 3 30 30 H 1.08993 * 109.47471 * 303.62994 * 1 2 3 31 31 H 1.09005 * 109.47355 * 63.63092 * 1 2 3 32 32 H 1.09006 * 110.39511 * 22.46979 * 9 8 6 33 33 H 1.08993 * 110.39469 * 260.06615 * 9 8 6 34 34 H 1.09003 * 110.44819 * 264.90321 * 10 9 8 35 35 H 1.09002 * 110.44382 * 142.36768 * 10 9 8 36 36 H 1.09001 * 110.75016 * 31.68407 * 12 11 10 37 37 H 1.08999 * 110.74589 * 155.03701 * 12 11 10 38 38 H 1.08997 * 109.86904 * 98.57050 * 13 12 11 39 39 H 1.09002 * 109.86960 * 219.55022 * 13 12 11 40 40 H 0.96998 * 119.99259 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.39207 * 263.78138 * 23 14 13 42 42 H 1.08993 * 110.38824 * 141.39617 * 23 14 13 43 43 H 1.09003 * 110.47504 * 99.58318 * 24 8 6 44 44 H 1.09007 * 110.47294 * 336.97582 * 24 8 6 45 45 H 1.08999 * 110.72805 * 96.39673 * 25 4 2 46 46 H 1.08999 * 110.72411 * 219.68880 * 25 4 2 47 47 H 1.08994 * 110.66621 * 155.84705 * 26 25 4 48 48 H 1.09000 * 110.67177 * 278.98476 * 26 25 4 49 49 H 1.09005 * 109.46633 * 302.72665 * 28 27 2 50 50 H 1.08992 * 109.47165 * 62.72634 * 28 27 2 51 51 H 1.08998 * 109.47173 * 182.73371 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 2.6710 -0.0903 -1.8491 6 6 0.9046 -1.2893 -2.0494 7 8 0.4120 -2.3606 -1.7656 8 7 0.4234 -0.5810 -3.0903 9 6 0.8917 0.7360 -3.5853 10 6 0.8077 0.6278 -5.1268 11 6 -0.2324 -0.4648 -5.3753 12 6 0.3417 -1.6170 -6.2156 13 6 0.1116 -1.1309 -7.6649 14 7 -0.9492 -0.1122 -7.6224 15 6 -1.4346 0.5788 -8.7003 16 1 -2.2183 1.3095 -8.5650 17 6 -0.9193 0.3402 -9.9670 18 7 0.0355 -0.5506 -10.1319 19 14 -1.5809 1.2833 -11.4374 20 1 -1.3649 2.7379 -11.2304 21 1 -0.8703 0.8468 -12.6661 22 1 -3.0340 1.0147 -11.5847 23 6 -1.4045 0.0425 -6.2257 24 6 -0.6941 -0.9449 -3.9978 25 6 2.9059 -1.9117 -0.6764 26 6 3.2682 -1.4185 0.7471 27 7 2.0339 -0.7204 1.1893 28 6 2.3211 0.2122 2.2873 29 1 -0.3633 -1.0257 0.0650 30 1 -0.3634 0.5691 0.8556 31 1 -0.3634 0.4565 -0.9208 32 1 1.9204 0.9154 -3.2726 33 1 0.2396 1.5312 -3.2242 34 1 1.7728 0.3362 -5.5412 35 1 0.4772 1.5730 -5.5573 36 1 1.4053 -1.7476 -6.0162 37 1 -0.2041 -2.5415 -6.0271 38 1 1.0291 -0.6943 -8.0592 39 1 -0.1996 -1.9671 -8.2911 40 1 0.3953 -0.7175 -11.0171 41 1 -2.2933 -0.5625 -6.0468 42 1 -1.6071 1.0907 -6.0063 43 1 -1.6086 -0.4310 -3.7015 44 1 -0.8463 -2.0243 -4.0014 45 1 2.3215 -2.8305 -0.6291 46 1 3.8053 -2.0556 -1.2751 47 1 3.4889 -2.2615 1.4017 48 1 4.1098 -0.7266 0.7120 49 1 3.0411 0.9584 1.9511 50 1 1.4000 0.7081 2.5932 51 1 2.7356 -0.3377 3.1322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041295781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:43 Heat of formation + Delta-G solvation = 8.047704 kcal Electronic energy + Delta-G solvation = -28742.142439 eV Core-core repulsion = 25063.241487 eV Total energy + Delta-G solvation = -3678.900951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78462 -39.35354 -37.76331 -35.65921 -32.91293 -32.36291 -31.63276 -30.20807 -29.32262 -28.52816 -26.96354 -25.39672 -25.16823 -24.00667 -22.61653 -21.63889 -21.01884 -20.21847 -18.98091 -18.30217 -17.34358 -16.78237 -16.21195 -15.80573 -15.65600 -15.03367 -14.72442 -14.59858 -14.25583 -14.15309 -13.86378 -13.52488 -13.23180 -12.87858 -12.78562 -12.59779 -12.38638 -12.32424 -12.04557 -12.01441 -11.90251 -11.58113 -11.55419 -11.42624 -11.24440 -11.10487 -11.02325 -10.92970 -10.86743 -10.72184 -10.20202 -10.04354 -9.90879 -9.77503 -9.68336 -9.57736 -8.76293 -8.59479 -8.57785 -6.82344 -5.70573 -3.04059 2.66156 2.97137 3.40038 3.44547 3.45757 3.63324 4.22848 4.29772 4.47675 4.50555 4.75826 4.85902 4.90180 4.96220 4.98717 5.04759 5.09146 5.13522 5.19230 5.32720 5.39425 5.44359 5.48514 5.50092 5.54182 5.55909 5.61803 5.69196 5.76287 5.81633 5.90206 5.95501 5.98504 6.02167 6.10431 6.16828 6.26985 6.38918 6.42678 6.52518 6.57172 6.65782 6.72519 6.73519 6.86128 7.56385 7.63890 7.64984 7.83647 8.23833 8.26237 9.22471 9.82714 10.49182 11.40867 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.034091 B = 0.002644 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.144909 B =10588.996277 C =10759.237170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.117 4.117 5 H 0.093 0.907 6 C 0.550 3.450 7 O -0.538 6.538 8 N -0.621 5.621 9 C 0.099 3.901 10 C -0.110 4.110 11 C -0.085 4.085 12 C -0.130 4.130 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.151 3.849 24 C 0.122 3.878 25 C -0.112 4.112 26 C 0.036 3.964 27 N -0.515 5.515 28 C 0.016 3.984 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.252 0.748 41 H 0.020 0.980 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.027 0.973 50 H 0.069 0.931 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.938 2.772 21.892 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.077 0.923 4 C -0.139 4.139 5 H 0.111 0.889 6 C 0.339 3.661 7 O -0.415 6.415 8 N -0.355 5.355 9 C -0.024 4.024 10 C -0.148 4.148 11 C -0.087 4.087 12 C -0.168 4.168 13 C 0.056 3.944 14 N -0.330 5.330 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.024 3.976 24 C 0.000 4.000 25 C -0.151 4.151 26 C -0.091 4.091 27 N -0.240 5.240 28 C -0.132 4.132 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.046 0.954 50 H 0.087 0.913 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.369 1.782 22.098 23.066 hybrid contribution 0.352 1.249 -1.210 1.774 sum 6.721 3.030 20.888 22.151 Atomic orbital electron populations 1.21946 0.93448 1.03716 1.01484 1.22213 0.96894 0.95322 0.88215 0.92321 1.22252 0.96099 0.99103 0.96428 0.88872 1.19703 0.83667 0.83880 0.78845 1.90690 1.60531 1.21898 1.68424 1.49176 1.35181 1.21117 1.30010 1.22600 0.99596 0.84896 0.95349 1.22317 0.99744 0.99771 0.92938 1.21628 0.97223 0.96424 0.93444 1.22820 0.99359 0.96242 0.98382 1.21184 0.92252 0.91740 0.89272 1.44528 1.42211 1.45083 1.01204 1.18996 1.15709 1.15761 0.85129 0.90546 1.24794 0.98842 0.99374 0.97452 1.69966 1.29383 1.35990 1.21627 0.86211 0.78157 0.79221 0.82225 1.21218 1.21656 1.21209 1.21360 0.93051 0.97548 0.85629 1.22204 0.88748 1.01480 0.87612 1.22529 0.99226 0.98619 0.94689 1.23243 0.91106 0.98482 0.96285 1.64706 1.26650 1.26266 1.06344 1.22521 1.00766 0.95118 0.94824 0.90640 0.92562 0.92027 0.90857 0.91085 0.90853 0.89741 0.92332 0.92438 0.93711 0.94096 0.93751 0.96242 0.94132 0.91215 0.89962 0.88576 0.90575 0.89595 0.93641 0.95430 0.91263 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.37 37.16 0.31 -1.31 16 2 C 0.08 0.81 3.09 -66.64 -0.21 0.61 16 3 H 0.06 0.50 7.69 -51.93 -0.40 0.11 16 4 C -0.12 -1.24 3.05 -90.41 -0.28 -1.52 16 5 H 0.09 0.84 6.46 -51.93 -0.34 0.51 16 6 C 0.55 7.62 4.82 -10.98 -0.05 7.57 16 7 O -0.54 -9.38 15.22 5.56 0.08 -9.29 16 8 N -0.62 -8.23 2.89 -169.53 -0.49 -8.71 16 9 C 0.10 1.10 6.93 -2.14 -0.01 1.08 16 10 C -0.11 -1.56 6.27 -25.87 -0.16 -1.73 16 11 C -0.09 -1.40 0.80 -153.96 -0.12 -1.53 16 12 C -0.13 -2.42 5.85 -25.52 -0.15 -2.57 16 13 C 0.18 4.31 5.33 -2.86 -0.02 4.30 16 14 N -0.60 -14.97 3.41 -170.50 -0.58 -15.55 16 15 C -0.23 -6.22 10.28 -15.06 -0.15 -6.37 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 19 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.15 2.96 6.04 -3.15 -0.02 2.94 16 24 C 0.12 1.79 6.18 -2.94 -0.02 1.78 16 25 C -0.11 -1.14 6.56 -24.86 -0.16 -1.30 16 26 C 0.04 0.31 6.56 -1.89 -0.01 0.30 16 27 N -0.52 -5.03 5.18 -230.78 -1.20 -6.22 16 28 C 0.02 0.12 9.41 60.06 0.57 0.69 16 29 H 0.07 1.03 7.02 -51.92 -0.36 0.66 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.68 7.10 -51.93 -0.37 0.31 16 32 H 0.07 0.67 6.49 -51.93 -0.34 0.33 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.09 7.51 -51.93 -0.39 0.70 16 35 H 0.08 1.27 7.54 -51.93 -0.39 0.88 16 36 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 37 H 0.06 1.06 7.73 -51.93 -0.40 0.66 16 38 H 0.04 1.18 7.39 -51.93 -0.38 0.80 16 39 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 42 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 43 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 44 H 0.08 1.33 7.36 -51.93 -0.38 0.94 16 45 H 0.10 1.20 6.91 -51.93 -0.36 0.85 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.33 8.00 -51.93 -0.42 -0.08 16 49 H 0.03 0.18 7.99 -51.93 -0.41 -0.23 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -31.68 382.03 -10.51 -42.19 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -9.05 Total: -1.31 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.59 Total: 2.59 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -1.70 Total: -56.82 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.68 -10.51 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041295781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.238 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds