Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.06034 * 2 1 4 4 C 1.53995 * 109.91711 * 238.80035 * 2 1 3 5 5 H 1.08997 * 110.39275 * 120.46172 * 4 2 1 6 6 C 1.50703 * 110.30933 * 358.33134 * 4 2 1 7 7 O 1.21282 * 120.00478 * 274.94034 * 6 4 2 8 8 N 1.34780 * 119.99855 * 94.94219 * 6 4 2 9 9 C 1.48279 * 127.72039 * 0.02562 * 8 6 4 10 10 C 1.54752 * 104.67262 * 141.26548 * 9 8 6 11 11 C 1.52879 * 104.40713 * 23.63994 * 10 9 8 12 12 C 1.53718 * 111.74441 * 237.41922 * 11 10 9 13 13 C 1.54585 * 102.78238 * 273.35604 * 12 11 10 14 14 N 1.47136 * 107.33291 * 339.13136 * 13 12 11 15 15 C 1.36935 * 125.60509 * 179.06953 * 14 13 12 16 16 H 1.08000 * 119.99890 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00186 * 359.96728 * 15 14 13 18 18 N 1.31628 * 119.99803 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46952 * 60.00260 * 19 17 15 21 21 H 1.48500 * 109.47472 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47076 * 300.00514 * 19 17 15 23 23 C 1.47710 * 108.78609 * 359.06493 * 14 13 12 24 24 C 1.48482 * 127.72491 * 180.02562 * 8 6 4 25 25 C 1.54599 * 105.13902 * 239.42221 * 4 2 1 26 26 C 1.54944 * 102.91979 * 338.03783 * 25 4 2 27 27 N 1.47900 * 109.91907 * 121.20523 * 2 1 3 28 28 C 1.46898 * 111.00172 * 265.20159 * 27 2 1 29 29 H 1.09008 * 109.46893 * 183.62872 * 1 2 3 30 30 H 1.08993 * 109.47471 * 303.62994 * 1 2 3 31 31 H 1.09005 * 109.47355 * 63.63092 * 1 2 3 32 32 H 1.09006 * 110.39511 * 22.46979 * 9 8 6 33 33 H 1.08993 * 110.39469 * 260.06615 * 9 8 6 34 34 H 1.09003 * 110.44819 * 264.90321 * 10 9 8 35 35 H 1.09002 * 110.44382 * 142.36768 * 10 9 8 36 36 H 1.09001 * 110.75016 * 31.68407 * 12 11 10 37 37 H 1.08999 * 110.74589 * 155.03701 * 12 11 10 38 38 H 1.08997 * 109.86904 * 98.57050 * 13 12 11 39 39 H 1.09002 * 109.86960 * 219.55022 * 13 12 11 40 40 H 0.96998 * 119.99259 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.39207 * 263.78138 * 23 14 13 42 42 H 1.08993 * 110.38824 * 141.39617 * 23 14 13 43 43 H 1.09003 * 110.47504 * 99.58318 * 24 8 6 44 44 H 1.09007 * 110.47294 * 336.97582 * 24 8 6 45 45 H 1.08999 * 110.72805 * 96.39673 * 25 4 2 46 46 H 1.08999 * 110.72411 * 219.68880 * 25 4 2 47 47 H 1.08994 * 110.66621 * 155.84705 * 26 25 4 48 48 H 1.09000 * 110.67177 * 278.98476 * 26 25 4 49 49 H 1.09005 * 109.46633 * 302.72665 * 28 27 2 50 50 H 1.08992 * 109.47165 * 62.72634 * 28 27 2 51 51 H 1.08998 * 109.47173 * 182.73371 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 2.6710 -0.0903 -1.8491 6 6 0.9046 -1.2893 -2.0494 7 8 0.4120 -2.3606 -1.7656 8 7 0.4234 -0.5810 -3.0903 9 6 0.8917 0.7360 -3.5853 10 6 0.8077 0.6278 -5.1268 11 6 -0.2324 -0.4648 -5.3753 12 6 0.3417 -1.6170 -6.2156 13 6 0.1116 -1.1309 -7.6649 14 7 -0.9492 -0.1122 -7.6224 15 6 -1.4346 0.5788 -8.7003 16 1 -2.2183 1.3095 -8.5650 17 6 -0.9193 0.3402 -9.9670 18 7 0.0355 -0.5506 -10.1319 19 14 -1.5809 1.2833 -11.4374 20 1 -1.3649 2.7379 -11.2304 21 1 -0.8703 0.8468 -12.6661 22 1 -3.0340 1.0147 -11.5847 23 6 -1.4045 0.0425 -6.2257 24 6 -0.6941 -0.9449 -3.9978 25 6 2.9059 -1.9117 -0.6764 26 6 3.2682 -1.4185 0.7471 27 7 2.0339 -0.7204 1.1893 28 6 2.3211 0.2122 2.2873 29 1 -0.3633 -1.0257 0.0650 30 1 -0.3634 0.5691 0.8556 31 1 -0.3634 0.4565 -0.9208 32 1 1.9204 0.9154 -3.2726 33 1 0.2396 1.5312 -3.2242 34 1 1.7728 0.3362 -5.5412 35 1 0.4772 1.5730 -5.5573 36 1 1.4053 -1.7476 -6.0162 37 1 -0.2041 -2.5415 -6.0271 38 1 1.0291 -0.6943 -8.0592 39 1 -0.1996 -1.9671 -8.2911 40 1 0.3953 -0.7175 -11.0171 41 1 -2.2933 -0.5625 -6.0468 42 1 -1.6071 1.0907 -6.0063 43 1 -1.6086 -0.4310 -3.7015 44 1 -0.8463 -2.0243 -4.0014 45 1 2.3215 -2.8305 -0.6291 46 1 3.8053 -2.0556 -1.2751 47 1 3.4889 -2.2615 1.4017 48 1 4.1098 -0.7266 0.7120 49 1 3.0411 0.9584 1.9511 50 1 1.4000 0.7081 2.5932 51 1 2.7356 -0.3377 3.1322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041295781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = -12.226776 kcal Electronic energy + Delta-G solvation = -28743.021606 eV Core-core repulsion = 25063.241487 eV Total energy + Delta-G solvation = -3679.780119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80270 -40.51745 -38.83930 -37.14470 -34.50148 -33.36779 -32.45006 -31.72506 -30.75814 -29.99245 -27.96929 -26.95780 -25.84307 -25.42695 -23.92324 -22.47834 -22.11233 -21.77760 -20.25332 -19.42745 -18.75834 -18.22131 -17.15143 -16.79707 -16.68947 -16.57232 -15.85040 -15.76830 -15.64668 -15.34932 -15.27975 -14.49696 -14.32670 -14.06346 -13.90917 -13.83472 -13.62894 -13.30942 -13.19655 -13.14553 -13.05873 -12.94720 -12.74811 -12.66848 -12.50222 -12.30951 -12.22096 -12.09009 -12.06693 -11.89096 -11.82156 -11.69892 -11.52713 -11.33531 -11.27529 -10.75183 -10.67251 -9.68948 -9.37916 -8.87050 -7.82487 -5.17714 1.47015 1.50155 1.56269 1.63110 1.93636 2.51504 2.99560 3.31394 3.37229 3.52561 3.53855 3.66318 3.71303 3.81200 3.93602 4.10092 4.21931 4.30229 4.30980 4.33153 4.40752 4.45606 4.49856 4.51214 4.60144 4.67354 4.69745 4.73158 4.78508 4.82731 4.84470 4.89238 4.92160 4.97462 5.00022 5.04635 5.05854 5.08033 5.20827 5.25052 5.31889 5.39667 5.44142 5.48067 5.66768 5.78286 5.92293 6.12518 6.20830 6.61140 7.11973 7.18928 7.79712 8.44951 9.27861 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.034091 B = 0.002644 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.144909 B =10588.996277 C =10759.237170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.083 0.917 4 C -0.113 4.113 5 H 0.119 0.881 6 C 0.548 3.452 7 O -0.582 6.582 8 N -0.620 5.620 9 C 0.107 3.893 10 C -0.108 4.108 11 C -0.073 4.073 12 C -0.117 4.117 13 C 0.192 3.808 14 N -0.623 5.623 15 C -0.238 4.238 16 H 0.085 0.915 17 C -0.069 4.069 18 N -0.954 5.954 19 Si 0.978 3.022 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.279 1.279 23 C 0.147 3.853 24 C 0.128 3.872 25 C -0.115 4.115 26 C 0.042 3.958 27 N -0.540 5.540 28 C 0.017 3.983 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.013 0.987 39 H -0.002 1.002 40 H 0.245 0.755 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.040 0.960 50 H 0.069 0.931 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.752 5.199 23.951 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.101 0.899 4 C -0.135 4.135 5 H 0.137 0.863 6 C 0.339 3.661 7 O -0.462 6.462 8 N -0.353 5.353 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.155 4.155 13 C 0.067 3.933 14 N -0.350 5.350 15 C -0.367 4.367 16 H 0.103 0.897 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.206 1.206 23 C 0.022 3.978 24 C 0.005 3.995 25 C -0.153 4.153 26 C -0.085 4.085 27 N -0.264 5.264 28 C -0.131 4.131 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.016 0.984 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.174 4.243 24.196 25.591 hybrid contribution 0.039 0.445 -1.832 1.886 sum 7.213 4.688 22.363 23.961 Atomic orbital electron populations 1.21872 0.94632 1.01607 1.01945 1.22224 0.95924 0.96337 0.87867 0.89914 1.22340 0.94927 0.99626 0.96615 0.86321 1.20326 0.83922 0.83197 0.78704 1.90676 1.61974 1.23941 1.69598 1.49222 1.34618 1.21891 1.29586 1.22707 1.02064 0.84144 0.92523 1.22274 0.98361 0.98390 0.95625 1.21486 0.96491 0.96026 0.93487 1.22657 1.00401 0.97077 0.95369 1.20866 0.90654 0.90046 0.91710 1.44809 1.42352 1.44889 1.02906 1.19433 1.15489 1.15612 0.86132 0.89701 1.25645 0.99534 1.00668 1.00271 1.70200 1.30872 1.37707 1.21529 0.85162 0.77474 0.78339 0.78421 1.19939 1.22419 1.20552 1.21546 0.94153 0.98555 0.83538 1.22001 0.90020 1.00554 0.86934 1.22518 0.99282 0.97227 0.96267 1.23234 0.91314 0.98904 0.95070 1.64668 1.27588 1.27298 1.06895 1.22553 1.01214 0.95082 0.94270 0.94065 0.91465 0.92051 0.87807 0.88703 0.91528 0.90183 0.91036 0.92463 0.96859 0.98397 0.94576 0.96235 0.92639 0.89703 0.91739 0.91770 0.89011 0.89415 0.91575 0.94127 0.91194 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.37 71.98 0.60 -2.24 16 2 C 0.09 1.42 3.09 45.06 0.14 1.56 16 3 H 0.08 1.02 7.69 -2.39 -0.02 1.00 16 4 C -0.11 -2.09 3.05 -10.66 -0.03 -2.12 16 5 H 0.12 1.58 6.46 -2.39 -0.02 1.56 16 6 C 0.55 14.33 4.82 87.66 0.42 14.75 16 7 O -0.58 -20.41 15.22 -3.04 -0.05 -20.45 16 8 N -0.62 -14.97 2.89 -808.65 -2.34 -17.31 16 9 C 0.11 1.97 6.93 86.63 0.60 2.57 16 10 C -0.11 -2.85 6.27 31.15 0.20 -2.65 16 11 C -0.07 -2.33 0.80 -51.83 -0.04 -2.37 16 12 C -0.12 -4.41 5.85 31.38 0.18 -4.23 16 13 C 0.19 9.58 5.33 86.80 0.46 10.04 16 14 N -0.62 -31.37 3.41 -693.35 -2.36 -33.73 16 15 C -0.24 -13.10 10.28 84.03 0.86 -12.24 16 16 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 18 N -0.95 -57.73 10.31 21.65 0.22 -57.51 16 19 Si 0.98 45.54 29.55 68.60 2.03 47.56 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.15 5.67 6.04 86.30 0.52 6.20 16 24 C 0.13 3.59 6.18 86.00 0.53 4.12 16 25 C -0.11 -2.11 6.56 31.80 0.21 -1.90 16 26 C 0.04 0.61 6.56 86.65 0.57 1.18 16 27 N -0.54 -9.19 5.18 -884.06 -4.58 -13.77 16 28 C 0.02 0.20 9.41 127.69 1.20 1.40 16 29 H 0.04 1.11 7.02 -2.38 -0.02 1.09 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.19 7.10 -2.38 -0.02 1.18 16 32 H 0.10 1.34 6.49 -2.38 -0.02 1.33 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.86 7.51 -2.39 -0.02 1.84 16 35 H 0.08 2.22 7.54 -2.39 -0.02 2.20 16 36 H 0.07 2.51 7.70 -2.39 -0.02 2.49 16 37 H 0.06 2.15 7.73 -2.39 -0.02 2.13 16 38 H 0.01 0.73 7.39 -2.39 -0.02 0.71 16 39 H 0.00 -0.13 7.50 -2.39 -0.02 -0.15 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 42 H 0.06 1.98 7.75 -2.39 -0.02 1.96 16 43 H 0.08 2.15 7.94 -2.39 -0.02 2.13 16 44 H 0.06 2.06 7.36 -2.38 -0.02 2.05 16 45 H 0.06 1.62 6.91 -2.39 -0.02 1.60 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 0.71 8.00 -2.39 -0.02 0.69 16 49 H 0.04 0.37 7.99 -2.38 -0.02 0.35 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -72.32 382.03 0.71 -71.62 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.89 Total: 12.95 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.89 Total: 10.65 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -9.06 Total: -122.32 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.32 0.71 -71.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041295781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.389 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds