Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99843 * 2 1 4 4 C 1.46897 * 111.00202 * 123.95089 * 2 1 3 5 5 H 1.09005 * 109.47447 * 316.20265 * 4 2 1 6 6 C 1.50694 * 109.47488 * 196.20016 * 4 2 1 7 7 O 1.21281 * 120.00054 * 322.94406 * 6 4 2 8 8 N 1.34778 * 120.00196 * 142.93949 * 6 4 2 9 9 C 1.47562 * 125.67118 * 0.02562 * 8 6 4 10 10 C 1.55188 * 105.00394 * 203.85598 * 9 8 6 11 11 C 1.53720 * 101.43973 * 324.52175 * 10 9 8 12 12 C 1.53659 * 111.40526 * 272.72542 * 11 10 9 13 13 C 1.55175 * 101.41651 * 272.69541 * 12 11 10 14 14 N 1.47569 * 105.01055 * 324.50578 * 13 12 11 15 15 C 1.36929 * 125.67643 * 203.86129 * 14 13 12 16 16 H 1.08007 * 119.99931 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00419 * 359.97438 * 15 14 13 18 18 N 1.31623 * 119.99638 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00499 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47059 * 59.99723 * 19 17 15 21 21 H 1.48496 * 109.47042 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47124 * 300.00098 * 19 17 15 23 23 C 1.47410 * 108.64684 * 23.85939 * 14 13 12 24 24 C 1.47406 * 125.67665 * 180.02562 * 8 6 4 25 25 C 1.53000 * 109.46935 * 76.20012 * 4 2 1 26 26 C 1.52998 * 117.49823 * 3.03395 * 25 4 2 27 27 C 1.53003 * 117.50059 * 294.37624 * 25 4 2 28 28 H 1.08992 * 109.46981 * 286.82489 * 1 2 3 29 29 H 1.09003 * 109.46716 * 46.82700 * 1 2 3 30 30 H 1.09003 * 109.46768 * 166.82465 * 1 2 3 31 31 H 1.09005 * 109.47370 * 191.41713 * 3 2 1 32 32 H 1.08999 * 109.47612 * 311.41916 * 3 2 1 33 33 H 1.09003 * 109.47285 * 71.41985 * 3 2 1 34 34 H 1.09000 * 110.33560 * 322.73340 * 9 8 6 35 35 H 1.09002 * 110.33684 * 84.87171 * 9 8 6 36 36 H 1.09007 * 111.03509 * 82.53708 * 10 9 8 37 37 H 1.09001 * 111.03405 * 206.42627 * 10 9 8 38 38 H 1.08999 * 111.03530 * 30.73080 * 12 11 10 39 39 H 1.09006 * 111.03143 * 154.66127 * 12 11 10 40 40 H 1.09002 * 110.33774 * 205.62206 * 13 12 11 41 41 H 1.09000 * 110.42118 * 83.42720 * 13 12 11 42 42 H 0.97001 * 119.99979 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.98179 * 238.54882 * 23 14 13 44 44 H 1.09000 * 109.98758 * 117.24200 * 23 14 13 45 45 H 1.09004 * 109.98240 * 297.23824 * 24 8 6 46 46 H 1.08996 * 109.98918 * 58.50798 * 24 8 6 47 47 H 1.08998 * 115.55179 * 148.70662 * 25 4 2 48 48 H 1.09001 * 117.49962 * 0.02562 * 26 25 4 49 49 H 1.09006 * 117.49692 * 145.02257 * 26 25 4 50 50 H 1.08998 * 117.49715 * 214.98310 * 27 25 4 51 51 H 1.09003 * 117.49477 * 359.97347 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.4332 -0.5138 2.0368 6 6 3.4492 -0.4260 1.3424 7 8 4.1664 -0.2276 0.3847 8 7 3.9525 -0.3423 2.5899 9 6 3.1970 -0.5587 3.8389 10 6 3.9847 0.2210 4.9251 11 6 5.4346 0.0122 4.4591 12 6 6.0248 -1.2876 5.0276 13 6 6.5816 -0.8011 6.3919 14 7 7.0740 0.5667 6.1379 15 6 8.0321 1.2188 6.8672 16 1 8.3245 2.2232 6.5987 17 6 8.6275 0.5890 7.9515 18 7 8.2708 -0.6349 8.2789 19 14 9.9340 1.4788 8.9467 20 1 9.3567 2.7189 9.5247 21 1 10.4078 0.5962 10.0429 22 1 11.0757 1.8291 8.0639 23 6 6.3628 1.1141 4.9685 24 6 5.3491 -0.0194 2.9336 25 6 1.8570 -2.2627 0.8524 26 6 1.2997 -2.6733 -0.5120 27 6 0.4415 -2.8335 0.7454 28 1 -0.3633 0.2974 0.9836 29 1 -0.3633 0.7032 -0.7495 30 1 -0.3633 -1.0007 -0.2342 31 1 3.0661 1.3497 -0.2034 32 1 1.4909 1.9543 -0.7706 33 1 1.8199 1.8280 0.9741 34 1 2.1868 -0.1602 3.7444 35 1 3.1634 -1.6207 4.0821 36 1 3.7201 1.2784 4.9171 37 1 3.8239 -0.2128 5.9121 38 1 5.2496 -2.0409 5.1676 39 1 6.8248 -1.6654 4.3908 40 1 7.3995 -1.4436 6.7181 41 1 5.7907 -0.7857 7.1418 42 1 8.6866 -1.0749 9.0369 43 1 7.0775 1.3876 4.1924 44 1 5.7792 1.9866 5.2622 45 1 6.0165 -0.7856 2.5390 46 1 5.6177 0.9547 2.5251 47 1 2.6239 -2.8985 1.2949 48 1 1.0320 -1.8771 -1.2066 49 1 1.6997 -3.5795 -0.9670 50 1 0.2773 -3.8449 1.1171 51 1 -0.3911 -2.1427 0.8785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041359977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = 52.869913 kcal Electronic energy + Delta-G solvation = -28707.828296 eV Core-core repulsion = 25030.870982 eV Total energy + Delta-G solvation = -3676.957315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78925 -39.36147 -37.71430 -35.77623 -35.32916 -32.76079 -30.62182 -29.62491 -29.00214 -28.35871 -27.63552 -25.56121 -23.80811 -23.00987 -22.85606 -22.35696 -21.01661 -20.27182 -19.16453 -18.71845 -17.25700 -16.93617 -16.59088 -16.02674 -15.76965 -15.02655 -14.78971 -14.47635 -14.40511 -13.99712 -13.78967 -13.63395 -13.35436 -13.15832 -12.87435 -12.68126 -12.57324 -12.49028 -12.38057 -11.92841 -11.77503 -11.54414 -11.53231 -11.33413 -11.12452 -11.03336 -10.96268 -10.76120 -10.69388 -10.33260 -10.26831 -10.09009 -9.98981 -9.76271 -9.62746 -9.47789 -8.66852 -8.61803 -8.55460 -6.85474 -5.67083 -3.08415 2.53506 2.82119 3.39639 3.43985 3.45100 3.52600 3.80222 4.29546 4.47274 4.50232 4.64739 4.69745 4.77173 4.84324 4.90532 4.97431 5.06923 5.10954 5.24194 5.28259 5.33507 5.35090 5.36356 5.44529 5.47343 5.50937 5.57996 5.74739 5.77669 5.82426 5.88612 5.92494 5.96854 6.02056 6.10459 6.12140 6.20105 6.24240 6.32253 6.52568 6.57720 6.65282 6.72586 6.73304 6.81383 7.47622 7.52531 7.60262 7.83362 8.17110 8.33730 9.20184 9.80732 10.45809 11.36945 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.002697 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.422450 B =10379.830426 C =10729.725900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.521 5.521 3 C 0.008 3.992 4 C 0.102 3.898 5 H 0.065 0.935 6 C 0.532 3.468 7 O -0.525 6.525 8 N -0.614 5.614 9 C 0.099 3.901 10 C -0.113 4.113 11 C -0.081 4.081 12 C -0.131 4.131 13 C 0.155 3.845 14 N -0.603 5.603 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.152 3.848 24 C 0.126 3.874 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.188 4.188 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.012 0.988 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.115 0.885 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 -2.518 -13.598 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.245 5.245 3 C -0.140 4.140 4 C -0.009 4.009 5 H 0.083 0.917 6 C 0.320 3.680 7 O -0.401 6.401 8 N -0.349 5.349 9 C -0.024 4.024 10 C -0.151 4.151 11 C -0.082 4.082 12 C -0.170 4.170 13 C 0.030 3.970 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.026 3.974 24 C 0.004 3.996 25 C -0.163 4.163 26 C -0.193 4.193 27 C -0.225 4.225 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.108 0.892 50 H 0.112 0.888 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.615 -2.664 -14.434 22.929 hybrid contribution 0.322 0.883 1.468 1.743 sum -17.294 -1.780 -12.966 21.688 Atomic orbital electron populations 1.22912 0.87123 1.03606 1.00551 1.61870 1.07388 1.14180 1.41104 1.22734 1.03629 0.87716 0.99879 1.21170 0.92596 0.94020 0.93129 0.91701 1.19914 0.89304 0.77313 0.81509 1.90675 1.60587 1.49357 1.39459 1.48742 1.11829 1.69059 1.05232 1.22505 0.95351 1.00620 0.83928 1.22641 0.93827 1.00425 0.98208 1.21544 0.95361 0.98978 0.92318 1.22911 0.99136 0.94360 1.00561 1.21969 0.98244 0.87034 0.89744 1.44590 1.43812 1.13371 1.31174 1.19032 1.11659 0.97470 1.06925 0.90559 1.24775 1.00321 0.96769 0.98760 1.69790 1.45333 1.12384 1.29655 0.86153 0.81399 0.78388 0.79562 1.21251 1.21579 1.21150 1.21044 0.92594 0.93239 0.90558 1.21856 0.81734 1.01073 0.94955 1.21980 0.97712 0.93104 1.03510 1.23051 1.02224 1.02999 0.91024 1.23281 0.93617 1.02157 1.03462 0.95431 0.91086 0.89682 0.88825 0.91305 0.95971 0.91225 0.90997 0.90738 0.89200 0.92219 0.91899 0.87742 0.96968 0.93695 0.95546 0.95715 0.91155 0.91356 0.87360 0.86658 0.89217 0.88760 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 8.16 60.06 0.49 0.54 16 2 N -0.52 -5.58 3.60 -244.59 -0.88 -6.47 16 3 C 0.01 0.09 8.73 60.06 0.52 0.61 16 4 C 0.10 1.14 2.13 -68.87 -0.15 0.99 16 5 H 0.07 0.65 5.97 -51.93 -0.31 0.34 16 6 C 0.53 7.58 5.73 -10.99 -0.06 7.52 16 7 O -0.53 -9.27 15.02 5.56 0.08 -9.19 16 8 N -0.61 -8.41 3.34 -170.85 -0.57 -8.98 16 9 C 0.10 1.13 6.51 -2.30 -0.01 1.11 16 10 C -0.11 -1.55 5.89 -25.20 -0.15 -1.69 16 11 C -0.08 -1.33 0.62 -153.99 -0.10 -1.42 16 12 C -0.13 -2.36 5.89 -25.24 -0.15 -2.51 16 13 C 0.15 3.61 5.77 -2.31 -0.01 3.59 16 14 N -0.60 -15.06 3.41 -170.41 -0.58 -15.64 16 15 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 16 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.50 10.10 55.49 0.56 -25.94 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.15 3.07 6.42 -3.64 -0.02 3.05 16 24 C 0.13 1.94 6.04 -3.64 -0.02 1.92 16 25 C -0.14 -1.47 5.72 -90.62 -0.52 -1.99 16 26 C -0.16 -1.43 9.38 -26.70 -0.25 -1.68 16 27 C -0.19 -1.46 9.51 -26.69 -0.25 -1.71 16 28 H 0.03 0.20 7.88 -51.93 -0.41 -0.21 16 29 H 0.07 0.48 7.85 -51.93 -0.41 0.08 16 30 H 0.08 0.59 4.02 -51.93 -0.21 0.38 16 31 H 0.09 1.30 5.68 -51.93 -0.29 1.01 16 32 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 33 H 0.02 0.24 8.11 -51.93 -0.42 -0.18 16 34 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 1.00 7.80 -51.92 -0.40 0.59 16 37 H 0.09 1.26 7.89 -51.93 -0.41 0.85 16 38 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 39 H 0.06 1.16 7.79 -51.93 -0.40 0.75 16 40 H 0.10 2.79 5.89 -51.93 -0.31 2.48 16 41 H 0.01 0.30 8.10 -51.93 -0.42 -0.12 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.03 0.54 7.78 -51.93 -0.40 0.14 16 44 H 0.03 0.50 7.61 -51.93 -0.40 0.10 16 45 H 0.07 1.14 7.61 -51.93 -0.40 0.75 16 46 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 47 H 0.11 1.18 8.06 -51.93 -0.42 0.76 16 48 H 0.12 1.12 5.86 -51.93 -0.30 0.81 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.10 0.67 5.66 -51.93 -0.29 0.38 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -31.08 378.92 -10.23 -41.31 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.59 Total: 0.65 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.93 Total: 1.66 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -1.47 Total: -57.02 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.08 -10.23 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041359977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.180 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds